gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 11 - 168 | 1.5e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 43 |
| AciI | CCGC | 1 cut(s) | 165 |
| AclWI | GGATC | 1 cut(s) | 640 |
| AcsI | RAATTY | 2 cut(s) | 206, 664 |
| AcuI | CTGAAG | 2 cut(s) | 69, 249 |
| AfaI | GTAC | 4 cut(s) | 294, 598, 613, 722 |
| AflII | CTTAAG | 1 cut(s) | 491 |
| AgsI | TTSAA | 7 cut(s) | 83, 191, 211, 265, 451, 564, 670 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AluBI | AGCT | 2 cut(s) | 227, 457 |
| AluI | AGCT | 2 cut(s) | 227, 457 |
| Alw26I | GTCTC | 1 cut(s) | 162 |
| AlwI | GGATC | 1 cut(s) | 640 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 143 |
| Ama87I | CYCGRG | 1 cut(s) | 556 |
| AoxI | GGCC | 3 cut(s) | 96, 108, 180 |
| ApeKI | GCWGC | 1 cut(s) | 581 |
| ApoI | RAATTY | 2 cut(s) | 206, 664 |
| AspS9I | GGNCC | 1 cut(s) | 109 |
| AsuHPI | GGTGA | 1 cut(s) | 757 |
| AvaI | CYCGRG | 1 cut(s) | 556 |
| BbvI | GCAGC | 1 cut(s) | 568 |
| BccI | CCATC | 1 cut(s) | 473 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BcoDI | GTCTC | 1 cut(s) | 162 |
| BfaI | CTAG | 1 cut(s) | 162 |
| BfrI | CTTAAG | 1 cut(s) | 491 |
| BfuAI | ACCTGC | 1 cut(s) | 43 |
| BisI | GCNGC | 1 cut(s) | 582 |
| BlsI | GCNGC | 1 cut(s) | 583 |
| BmcAI | AGTACT | 1 cut(s) | 613 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| BmeT110I | CYCGRG | 1 cut(s) | 556 |
| BmgT120I | GGNCC | 1 cut(s) | 109 |
| BmiI | GGNNCC | 2 cut(s) | 33, 553 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmsI | GCATC | 1 cut(s) | 234 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 446, 478 |
| BsaBI | GATNNNNATC | 1 cut(s) | 464 |
| BsaJI | CCNNGG | 1 cut(s) | 177 |
| Bse1I | ACTGG | 1 cut(s) | 347 |
| Bse8I | GATNNNNATC | 1 cut(s) | 464 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseDI | CCNNGG | 1 cut(s) | 177 |
| BseJI | GATNNNNATC | 1 cut(s) | 464 |
| BseNI | ACTGG | 1 cut(s) | 347 |
| BseRI | GAGGAG | 1 cut(s) | 41 |
| BseXI | GCAGC | 1 cut(s) | 568 |
| BshFI | GGCC | 3 cut(s) | 98, 110, 182 |
| BsiHKCI | CYCGRG | 1 cut(s) | 556 |
| BsmAI | GTCTC | 1 cut(s) | 162 |
| BsmI | GAATGC | 1 cut(s) | 526 |
| BsnI | GGCC | 3 cut(s) | 98, 110, 182 |
| BsoBI | CYCGRG | 1 cut(s) | 556 |
| Bsp143I | GATC | 2 cut(s) | 459, 632 |
| BspACI | CCGC | 1 cut(s) | 165 |
| BspANI | GGCC | 3 cut(s) | 98, 110, 182 |
| BspLI | GGNNCC | 2 cut(s) | 33, 553 |
| BspMI | ACCTGC | 1 cut(s) | 43 |
| BspPI | GGATC | 1 cut(s) | 640 |
| BspTI | CTTAAG | 1 cut(s) | 491 |
| BsrI | ACTGG | 1 cut(s) | 347 |
| BssECI | CCNNGG | 1 cut(s) | 177 |
| BssMI | GATC | 2 cut(s) | 459, 632 |
| BssT1I | CCWWGG | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 2 cut(s) | 601, 713 |
| Bst6I | CTCTTC | 1 cut(s) | 753 |
| BstAFI | CTTAAG | 1 cut(s) | 491 |
| BstC8I | GCNNGC | 4 cut(s) | 55, 249, 322, 735 |
| BstDEI | CTNAG | 2 cut(s) | 396, 606 |
| BstEII | GGTNACC | 1 cut(s) | 763 |
| BstKTI | GATC | 2 cut(s) | 462, 635 |
| BstMAI | GTCTC | 1 cut(s) | 162 |
| BstMBI | GATC | 2 cut(s) | 459, 632 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstPI | GGTNACC | 1 cut(s) | 763 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 1 cut(s) | 568 |
| BstX2I | RGATCY | 1 cut(s) | 632 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 106 |
| BstYI | RGATCY | 1 cut(s) | 632 |
| BsuRI | GGCC | 3 cut(s) | 98, 110, 182 |
| BtsI | GCAGTG | 1 cut(s) | 201 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 354 |
| BveI | ACCTGC | 1 cut(s) | 43 |
| Cac8I | GCNNGC | 4 cut(s) | 55, 249, 322, 735 |
| CaiI | CAGNNNCTG | 1 cut(s) | 143 |
| Cfr13I | GGNCC | 1 cut(s) | 109 |
| Csp6I | GTAC | 4 cut(s) | 293, 597, 612, 721 |
| CviAII | CATG | 3 cut(s) | 441, 536, 700 |
| CviQI | GTAC | 4 cut(s) | 293, 597, 612, 721 |
| DdeI | CTNAG | 2 cut(s) | 396, 606 |
| DpnI | GATC | 2 cut(s) | 461, 634 |
| DpnII | GATC | 2 cut(s) | 459, 632 |
| Eam1104I | CTCTTC | 1 cut(s) | 753 |
| EarI | CTCTTC | 1 cut(s) | 753 |
| Eco130I | CCWWGG | 1 cut(s) | 177 |
| Eco147I | AGGCCT | 1 cut(s) | 182 |
| Eco57I | CTGAAG | 2 cut(s) | 69, 249 |
| Eco88I | CYCGRG | 1 cut(s) | 556 |
| Eco91I | GGTNACC | 1 cut(s) | 763 |
| EcoO65I | GGTNACC | 1 cut(s) | 763 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoT14I | CCWWGG | 1 cut(s) | 177 |
| ErhI | CCWWGG | 1 cut(s) | 177 |
| FaeI | CATG | 3 cut(s) | 444, 539, 703 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 474, 506 |
| FatI | CATG | 3 cut(s) | 440, 535, 699 |
| Fnu4HI | GCNGC | 1 cut(s) | 582 |
| Fsp4HI | GCNGC | 1 cut(s) | 582 |
| FspBI | CTAG | 1 cut(s) | 162 |
| GluI | GCNGC | 1 cut(s) | 582 |
| HaeIII | GGCC | 3 cut(s) | 98, 110, 182 |
| Hin1II | CATG | 3 cut(s) | 444, 539, 703 |
| HinfI | GANTC | 3 cut(s) | 140, 215, 748 |
| HphI | GGTGA | 1 cut(s) | 757 |
| Hpy166II | GTNNAC | 1 cut(s) | 295 |
| Hpy188I | TCNGA | 2 cut(s) | 220, 303 |
| Hpy188III | TCNNGA | 1 cut(s) | 188 |
| Hpy8I | GTNNAC | 1 cut(s) | 295 |
| HpyAV | CCTTC | 3 cut(s) | 427, 600, 700 |
| HpyCH4III | ACNGT | 2 cut(s) | 601, 713 |
| HpyCH4V | TGCA | 4 cut(s) | 247, 404, 526, 684 |
| HpyF3I | CTNAG | 2 cut(s) | 396, 606 |
| Hsp92II | CATG | 3 cut(s) | 444, 539, 703 |
| Kzo9I | GATC | 2 cut(s) | 459, 632 |
| LmnI | GCTCC | 4 cut(s) | 43, 437, 476, 551 |
| Lsp1109I | GCAGC | 1 cut(s) | 568 |
| LweI | GCATC | 1 cut(s) | 234 |
| MaeI | CTAG | 1 cut(s) | 162 |
| MaeIII | GTNAC | 1 cut(s) | 763 |
| MalI | GATC | 2 cut(s) | 461, 634 |
| MboI | GATC | 2 cut(s) | 459, 632 |
| MboII | GAAGA | 7 cut(s) | 85, 136, 491, 494, 556, 715, 770 |
| MflI | RGATCY | 1 cut(s) | 632 |
| MluCI | AATT | 2 cut(s) | 206, 664 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MnlI | CCTC | 7 cut(s) | 19, 22, 143, 282, 369, 565, 754 |
| MseI | TTAA | 2 cut(s) | 492, 645 |
| MspCI | CTTAAG | 1 cut(s) | 491 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| Mva1269I | GAATGC | 1 cut(s) | 526 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| NdeII | GATC | 2 cut(s) | 459, 632 |
| NlaIII | CATG | 3 cut(s) | 444, 539, 703 |
| NlaIV | GGNNCC | 2 cut(s) | 33, 553 |
| NmuCI | GTSAC | 1 cut(s) | 763 |
| PaeR7I | CTCGAG | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 182 |
| PctI | GAATGC | 1 cut(s) | 526 |
| PfeI | GAWTC | 2 cut(s) | 140, 748 |
| PflFI | GACNNNGTC | 1 cut(s) | 14 |
| PkrI | GCNGC | 1 cut(s) | 583 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspEI | GGTNACC | 1 cut(s) | 763 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 2 cut(s) | 33, 553 |
| PspPI | GGNCC | 1 cut(s) | 109 |
| PspXI | VCTCGAGB | 1 cut(s) | 556 |
| PstNI | CAGNNNCTG | 1 cut(s) | 143 |
| PsuI | RGATCY | 1 cut(s) | 632 |
| PsyI | GACNNNGTC | 1 cut(s) | 14 |
| RsaI | GTAC | 4 cut(s) | 294, 598, 613, 722 |
| RsaNI | GTAC | 4 cut(s) | 293, 597, 612, 721 |
| SaqAI | TTAA | 2 cut(s) | 492, 645 |
| SatI | GCNGC | 1 cut(s) | 582 |
| Sau3AI | GATC | 2 cut(s) | 459, 632 |
| Sau96I | GGNCC | 1 cut(s) | 109 |
| ScaI | AGTACT | 1 cut(s) | 613 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SetI | ASST | 9 cut(s) | 37, 229, 243, 286, 397, 459, 507, 592, 765 |
| SfaNI | GCATC | 1 cut(s) | 234 |
| Sfr274I | CTCGAG | 1 cut(s) | 556 |
| SlaI | CTCGAG | 1 cut(s) | 556 |
| SmlI | CTYRAG | 2 cut(s) | 491, 556 |
| SmoI | CTYRAG | 2 cut(s) | 491, 556 |
| Sse9I | AATT | 2 cut(s) | 206, 664 |
| SseBI | AGGCCT | 1 cut(s) | 182 |
| SsiI | CCGC | 1 cut(s) | 165 |
| SspMI | CTAG | 1 cut(s) | 162 |
| StuI | AGGCCT | 1 cut(s) | 182 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| StyI | CCWWGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 2 cut(s) | 601, 713 |
| TaqI | TCGA | 1 cut(s) | 557 |
| TasI | AATT | 2 cut(s) | 206, 664 |
| TatI | WGTACW | 2 cut(s) | 611, 720 |
| TfiI | GAWTC | 2 cut(s) | 140, 748 |
| Tru1I | TTAA | 2 cut(s) | 492, 645 |
| Tru9I | TTAA | 2 cut(s) | 492, 645 |
| TscAI | CASTG | 2 cut(s) | 201, 354 |
| TseFI | GTSAC | 1 cut(s) | 763 |
| TseI | GCWGC | 1 cut(s) | 581 |
| Tsp45I | GTSAC | 1 cut(s) | 763 |
| TspDTI | ATGAA | 4 cut(s) | 137, 288, 716, 740 |
| TspRI | CASTG | 2 cut(s) | 201, 354 |
| Tth111I | GACNNNGTC | 1 cut(s) | 14 |
| Vha464I | CTTAAG | 1 cut(s) | 491 |
| XapI | RAATTY | 2 cut(s) | 206, 664 |
| XhoI | CTCGAG | 1 cut(s) | 556 |
| XspI | CTAG | 1 cut(s) | 162 |
| ZrmI | AGTACT | 1 cut(s) | 613 |