gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 45 - 189 | 1.8e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 451 |
| AdeI | CACNNNGTG | 1 cut(s) | 551 |
| AfaI | GTAC | 2 cut(s) | 139, 482 |
| AgsI | TTSAA | 6 cut(s) | 206, 271, 292, 412, 493, 557 |
| AjnI | CCWGG | 1 cut(s) | 462 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 236, 268 |
| AluBI | AGCT | 1 cut(s) | 538 |
| AluI | AGCT | 1 cut(s) | 538 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 3 cut(s) | 49, 303, 557 |
| AlwI | GGATC | 1 cut(s) | 451 |
| ApeKI | GCWGC | 1 cut(s) | 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 287 |
| AsuHPI | GGTGA | 2 cut(s) | 328, 446 |
| BanII | GRGCYC | 1 cut(s) | 540 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BbvI | GCAGC | 1 cut(s) | 385 |
| BccI | CCATC | 1 cut(s) | 162 |
| BciT130I | CCWGG | 1 cut(s) | 464 |
| BciVI | GTATCC | 1 cut(s) | 100 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BcoDI | GTCTC | 3 cut(s) | 49, 303, 557 |
| BfaI | CTAG | 1 cut(s) | 474 |
| BfuI | GTATCC | 1 cut(s) | 100 |
| BisI | GCNGC | 1 cut(s) | 399 |
| BlsI | GCNGC | 1 cut(s) | 400 |
| BmcAI | AGTACT | 1 cut(s) | 482 |
| Bme1390I | CCNGG | 1 cut(s) | 464 |
| BmrFI | CCNGG | 1 cut(s) | 464 |
| BmrI | ACTGGG | 1 cut(s) | 39 |
| BmsI | GCATC | 2 cut(s) | 148, 385 |
| BmuI | ACTGGG | 1 cut(s) | 39 |
| BpmI | CTGGAG | 1 cut(s) | 446 |
| BsaAI | YACGTR | 1 cut(s) | 325 |
| Bse1I | ACTGG | 4 cut(s) | 34, 364, 423, 450 |
| Bse3DI | GCAATG | 1 cut(s) | 336 |
| BseBI | CCWGG | 1 cut(s) | 464 |
| BseGI | GGATG | 1 cut(s) | 427 |
| BseMI | GCAATG | 1 cut(s) | 336 |
| BseMII | CTCAG | 1 cut(s) | 500 |
| BseNI | ACTGG | 4 cut(s) | 34, 364, 423, 450 |
| BseRI | GAGGAG | 1 cut(s) | 575 |
| BseXI | GCAGC | 1 cut(s) | 385 |
| BseYI | CCCAGC | 1 cut(s) | 146 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BsmAI | GTCTC | 3 cut(s) | 49, 303, 557 |
| BsmBI | CGTCTC | 1 cut(s) | 49 |
| BsmI | GAATGC | 1 cut(s) | 277 |
| Bsp1286I | GDGCHC | 1 cut(s) | 540 |
| Bsp1407I | TGTACA | 1 cut(s) | 137 |
| Bsp143I | GATC | 2 cut(s) | 130, 456 |
| BspCNI | CTCAG | 1 cut(s) | 499 |
| BspHI | TCATGA | 2 cut(s) | 381, 453 |
| BspPI | GGATC | 1 cut(s) | 451 |
| BsrDI | GCAATG | 1 cut(s) | 336 |
| BsrGI | TGTACA | 1 cut(s) | 137 |
| BsrI | ACTGG | 4 cut(s) | 34, 364, 423, 450 |
| BssMI | GATC | 2 cut(s) | 130, 456 |
| Bst2UI | CCWGG | 1 cut(s) | 464 |
| Bst4CI | ACNGT | 3 cut(s) | 72, 226, 576 |
| BstAUI | TGTACA | 1 cut(s) | 137 |
| BstBAI | YACGTR | 1 cut(s) | 325 |
| BstDEI | CTNAG | 2 cut(s) | 7, 486 |
| BstF5I | GGATG | 1 cut(s) | 427 |
| BstKTI | GATC | 2 cut(s) | 133, 459 |
| BstMAI | GTCTC | 3 cut(s) | 49, 303, 557 |
| BstMBI | GATC | 2 cut(s) | 130, 456 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstNI | CCWGG | 1 cut(s) | 464 |
| BstSCI | CCNGG | 1 cut(s) | 462 |
| BstV1I | GCAGC | 1 cut(s) | 385 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BsuI | GTATCC | 1 cut(s) | 100 |
| BtgZI | GCGATG | 1 cut(s) | 526 |
| BtsCI | GGATG | 1 cut(s) | 427 |
| BtsIMutI | CAGTG | 3 cut(s) | 27, 357, 416 |
| CciI | TCATGA | 2 cut(s) | 381, 453 |
| Csp6I | GTAC | 2 cut(s) | 138, 481 |
| CviAII | CATG | 4 cut(s) | 214, 248, 382, 454 |
| CviJI | RGCY | 5 cut(s) | 11, 146, 179, 467, 538 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 146, 179, 467, 538 |
| CviQI | GTAC | 2 cut(s) | 138, 481 |
| DdeI | CTNAG | 2 cut(s) | 7, 486 |
| DpnI | GATC | 2 cut(s) | 132, 458 |
| DpnII | GATC | 2 cut(s) | 130, 456 |
| DraIII | CACNNNGTG | 1 cut(s) | 551 |
| Ecl136II | GAGCTC | 1 cut(s) | 538 |
| Eco24I | GRGCYC | 1 cut(s) | 540 |
| Eco53kI | GAGCTC | 1 cut(s) | 538 |
| EcoICRI | GAGCTC | 1 cut(s) | 538 |
| EcoRII | CCWGG | 1 cut(s) | 462 |
| EcoT38I | GRGCYC | 1 cut(s) | 540 |
| Esp3I | CGTCTC | 1 cut(s) | 49 |
| FaeI | CATG | 4 cut(s) | 217, 251, 385, 457 |
| FaiI | YATR | 7 cut(s) | 215, 249, 343, 368, 383, 455, 530 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 177, 209 |
| FatI | CATG | 4 cut(s) | 213, 247, 381, 453 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| Fnu4HI | GCNGC | 1 cut(s) | 399 |
| FokI | GGATG | 1 cut(s) | 434 |
| FriOI | GRGCYC | 1 cut(s) | 540 |
| Fsp4HI | GCNGC | 1 cut(s) | 399 |
| FspBI | CTAG | 1 cut(s) | 474 |
| GluI | GCNGC | 1 cut(s) | 399 |
| GsaI | CCCAGC | 1 cut(s) | 150 |
| GsuI | CTGGAG | 1 cut(s) | 446 |
| Hin1II | CATG | 4 cut(s) | 217, 251, 385, 457 |
| HincII | GTYRAC | 1 cut(s) | 78 |
| HindII | GTYRAC | 1 cut(s) | 78 |
| HinfI | GANTC | 1 cut(s) | 296 |
| HphI | GGTGA | 2 cut(s) | 328, 446 |
| Hpy166II | GTNNAC | 1 cut(s) | 78 |
| Hpy188I | TCNGA | 3 cut(s) | 126, 176, 502 |
| Hpy188III | TCNNGA | 3 cut(s) | 382, 454, 557 |
| Hpy8I | GTNNAC | 1 cut(s) | 78 |
| HpyAV | CCTTC | 1 cut(s) | 487 |
| HpyCH4III | ACNGT | 3 cut(s) | 72, 226, 576 |
| HpyCH4IV | ACGT | 1 cut(s) | 324 |
| HpyCH4V | TGCA | 3 cut(s) | 101, 161, 275 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HpyF3I | CTNAG | 2 cut(s) | 7, 486 |
| HpySE526I | ACGT | 1 cut(s) | 324 |
| Hsp92II | CATG | 4 cut(s) | 217, 251, 385, 457 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| Kzo9I | GATC | 2 cut(s) | 130, 456 |
| LpnPI | CCDG | 7 cut(s) | 15, 132, 345, 404, 431, 449, 476 |
| Lsp1109I | GCAGC | 1 cut(s) | 385 |
| LweI | GCATC | 2 cut(s) | 148, 385 |
| MaeI | CTAG | 1 cut(s) | 474 |
| MaeII | ACGT | 1 cut(s) | 324 |
| MalI | GATC | 2 cut(s) | 132, 458 |
| MboI | GATC | 2 cut(s) | 130, 456 |
| MfeI | CAATTG | 1 cut(s) | 276 |
| MhlI | GDGCHC | 1 cut(s) | 540 |
| MluCI | AATT | 4 cut(s) | 120, 251, 276, 312 |
| MlyI | GAGTC | 1 cut(s) | 305 |
| MnlI | CCTC | 3 cut(s) | 224, 470, 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 287 |
| MseI | TTAA | 3 cut(s) | 84, 351, 426 |
| MslI | CAYNNNNRTG | 1 cut(s) | 386 |
| MspR9I | CCNGG | 1 cut(s) | 464 |
| MunI | CAATTG | 1 cut(s) | 276 |
| Mva1269I | GAATGC | 1 cut(s) | 277 |
| MvaI | CCWGG | 1 cut(s) | 464 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeII | GATC | 2 cut(s) | 130, 456 |
| NlaIII | CATG | 4 cut(s) | 217, 251, 385, 457 |
| PagI | TCATGA | 2 cut(s) | 381, 453 |
| PctI | GAATGC | 1 cut(s) | 277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 400 |
| PleI | GAGTC | 1 cut(s) | 304 |
| PpsI | GAGTC | 1 cut(s) | 304 |
| Ppu21I | YACGTR | 1 cut(s) | 325 |
| Psp124BI | GAGCTC | 1 cut(s) | 540 |
| Psp6I | CCWGG | 1 cut(s) | 462 |
| PspFI | CCCAGC | 1 cut(s) | 146 |
| PspGI | CCWGG | 1 cut(s) | 462 |
| RsaI | GTAC | 2 cut(s) | 139, 482 |
| RsaNI | GTAC | 2 cut(s) | 138, 481 |
| RseI | CAYNNNNRTG | 1 cut(s) | 386 |
| SacI | GAGCTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 3 cut(s) | 84, 351, 426 |
| SatI | GCNGC | 1 cut(s) | 399 |
| Sau3AI | GATC | 2 cut(s) | 130, 456 |
| ScaI | AGTACT | 1 cut(s) | 482 |
| SchI | GAGTC | 1 cut(s) | 305 |
| ScrFI | CCNGG | 1 cut(s) | 464 |
| SduI | GDGCHC | 1 cut(s) | 540 |
| SetI | ASST | 4 cut(s) | 235, 327, 498, 540 |
| SfaNI | GCATC | 2 cut(s) | 148, 385 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 386 |
| Sse9I | AATT | 4 cut(s) | 120, 251, 276, 312 |
| SspI | AATATT | 2 cut(s) | 16, 430 |
| SspMI | CTAG | 1 cut(s) | 474 |
| SstI | GAGCTC | 1 cut(s) | 540 |
| StyD4I | CCNGG | 1 cut(s) | 462 |
| TaaI | ACNGT | 3 cut(s) | 72, 226, 576 |
| TaiI | ACGT | 1 cut(s) | 327 |
| TaqI | TCGA | 1 cut(s) | 229 |
| TaqII | GACCGA | 1 cut(s) | 407 |
| TasI | AATT | 4 cut(s) | 120, 251, 276, 312 |
| TatI | WGTACW | 2 cut(s) | 137, 480 |
| Tru1I | TTAA | 3 cut(s) | 84, 351, 426 |
| Tru9I | TTAA | 3 cut(s) | 84, 351, 426 |
| TscAI | CASTG | 3 cut(s) | 34, 364, 423 |
| TseI | GCWGC | 1 cut(s) | 398 |
| TspDTI | ATGAA | 4 cut(s) | 17, 264, 398, 442 |
| TspRI | CASTG | 3 cut(s) | 34, 364, 423 |
| XmnI | GAANNNNTTC | 1 cut(s) | 287 |
| XspI | CTAG | 1 cut(s) | 474 |
| ZrmI | AGTACT | 1 cut(s) | 482 |