gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 154 |
| AclWI | GGATC | 2 cut(s) | 57, 70 |
| AcsI | RAATTY | 3 cut(s) | 317, 349, 493 |
| AcuI | CTGAAG | 2 cut(s) | 461, 795 |
| AfaI | GTAC | 1 cut(s) | 169 |
| AflIII | ACRYGT | 1 cut(s) | 658 |
| AgsI | TTSAA | 3 cut(s) | 50, 493, 638 |
| AjnI | CCWGG | 1 cut(s) | 551 |
| AluBI | AGCT | 7 cut(s) | 20, 101, 161, 338, 439, 520, 767 |
| AluI | AGCT | 7 cut(s) | 20, 101, 161, 338, 439, 520, 767 |
| Alw21I | GWGCWC | 2 cut(s) | 11, 586 |
| Alw26I | GTCTC | 1 cut(s) | 614 |
| AlwI | GGATC | 2 cut(s) | 57, 70 |
| AoxI | GGCC | 1 cut(s) | 240 |
| ApeKI | GCWGC | 1 cut(s) | 149 |
| ApoI | RAATTY | 3 cut(s) | 317, 349, 493 |
| AspS9I | GGNCC | 1 cut(s) | 240 |
| BamHI | GGATCC | 1 cut(s) | 62 |
| BbsI | GAAGAC | 1 cut(s) | 144 |
| Bbv12I | GWGCWC | 2 cut(s) | 11, 586 |
| BbvI | GCAGC | 1 cut(s) | 161 |
| BccI | CCATC | 3 cut(s) | 72, 106, 377 |
| BciT130I | CCWGG | 1 cut(s) | 553 |
| BclI | TGATCA | 1 cut(s) | 670 |
| BcoDI | GTCTC | 1 cut(s) | 614 |
| BfmI | CTRYAG | 1 cut(s) | 147 |
| BfuAI | ACCTGC | 1 cut(s) | 154 |
| BisI | GCNGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 1 cut(s) | 151 |
| Bme1390I | CCNGG | 1 cut(s) | 553 |
| BmgT120I | GGNCC | 1 cut(s) | 240 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BmrFI | CCNGG | 1 cut(s) | 553 |
| BmsI | GCATC | 2 cut(s) | 292, 463 |
| BpiI | GAAGAC | 1 cut(s) | 144 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 30 |
| BpuEI | CTTGAG | 2 cut(s) | 470, 570 |
| Bsa29I | ATCGAT | 1 cut(s) | 748 |
| BsaJI | CCNNGG | 1 cut(s) | 552 |
| Bse1I | ACTGG | 2 cut(s) | 64, 838 |
| Bse3DI | GCAATG | 1 cut(s) | 426 |
| BseBI | CCWGG | 1 cut(s) | 553 |
| BseCI | ATCGAT | 1 cut(s) | 748 |
| BseDI | CCNNGG | 1 cut(s) | 552 |
| BseGI | GGATG | 3 cut(s) | 91, 368, 454 |
| BseMI | GCAATG | 1 cut(s) | 426 |
| BseNI | ACTGG | 2 cut(s) | 64, 838 |
| BseRI | GAGGAG | 2 cut(s) | 250, 605 |
| BseXI | GCAGC | 1 cut(s) | 161 |
| BshFI | GGCC | 1 cut(s) | 242 |
| BshVI | ATCGAT | 1 cut(s) | 748 |
| BsiHKAI | GWGCWC | 2 cut(s) | 11, 586 |
| BslFI | GGGAC | 1 cut(s) | 569 |
| BsmAI | GTCTC | 1 cut(s) | 614 |
| BsmFI | GGGAC | 1 cut(s) | 569 |
| BsnI | GGCC | 1 cut(s) | 242 |
| Bsp1286I | GDGCHC | 2 cut(s) | 11, 586 |
| Bsp143I | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| BspANI | GGCC | 1 cut(s) | 242 |
| BspDI | ATCGAT | 1 cut(s) | 748 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BspMAI | CTGCAG | 1 cut(s) | 151 |
| BspMI | ACCTGC | 1 cut(s) | 154 |
| BspPI | GGATC | 2 cut(s) | 57, 70 |
| BsrDI | GCAATG | 1 cut(s) | 426 |
| BsrI | ACTGG | 2 cut(s) | 64, 838 |
| BssECI | CCNNGG | 1 cut(s) | 552 |
| BssMI | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| Bst2UI | CCWGG | 1 cut(s) | 553 |
| Bst4CI | ACNGT | 2 cut(s) | 254, 625 |
| BstC8I | GCNNGC | 1 cut(s) | 687 |
| BstDEI | CTNAG | 1 cut(s) | 818 |
| BstF5I | GGATG | 3 cut(s) | 91, 368, 454 |
| BstKTI | GATC | 5 cut(s) | 65, 469, 568, 673, 752 |
| BstMAI | GTCTC | 1 cut(s) | 614 |
| BstMBI | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 158 |
| BstNI | CCWGG | 1 cut(s) | 553 |
| BstSCI | CCNGG | 1 cut(s) | 551 |
| BstSFI | CTRYAG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 1 cut(s) | 161 |
| BstV2I | GAAGAC | 1 cut(s) | 144 |
| BstX2I | RGATCY | 1 cut(s) | 62 |
| BstYI | RGATCY | 1 cut(s) | 62 |
| Bsu15I | ATCGAT | 1 cut(s) | 748 |
| BsuRI | GGCC | 1 cut(s) | 242 |
| BsuTUI | ATCGAT | 1 cut(s) | 748 |
| BtsCI | GGATG | 3 cut(s) | 91, 368, 454 |
| BtsI | GCAGTG | 1 cut(s) | 312 |
| BtsIMutI | CAGTG | 3 cut(s) | 259, 312, 831 |
| BveI | ACCTGC | 1 cut(s) | 154 |
| Cac8I | GCNNGC | 1 cut(s) | 687 |
| Cfr13I | GGNCC | 1 cut(s) | 240 |
| ClaI | ATCGAT | 1 cut(s) | 748 |
| Csp6I | GTAC | 1 cut(s) | 168 |
| CviAII | CATG | 4 cut(s) | 91, 244, 373, 577 |
| CviQI | GTAC | 1 cut(s) | 168 |
| DdeI | CTNAG | 1 cut(s) | 818 |
| DpnI | GATC | 5 cut(s) | 64, 468, 567, 672, 751 |
| DpnII | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| DraI | TTTAAA | 3 cut(s) | 727, 763, 841 |
| Eco57I | CTGAAG | 2 cut(s) | 461, 795 |
| EcoRI | GAATTC | 1 cut(s) | 493 |
| EcoRII | CCWGG | 1 cut(s) | 551 |
| FaeI | CATG | 4 cut(s) | 94, 247, 376, 580 |
| FaqI | GGGAC | 1 cut(s) | 569 |
| FatI | CATG | 4 cut(s) | 90, 243, 372, 576 |
| FauNDI | CATATG | 1 cut(s) | 483 |
| FbaI | TGATCA | 1 cut(s) | 670 |
| Fnu4HI | GCNGC | 1 cut(s) | 150 |
| FokI | GGATG | 3 cut(s) | 98, 355, 441 |
| Fsp4HI | GCNGC | 1 cut(s) | 150 |
| GluI | GCNGC | 1 cut(s) | 150 |
| HaeIII | GGCC | 1 cut(s) | 242 |
| Hin1II | CATG | 4 cut(s) | 94, 247, 376, 580 |
| HinfI | GANTC | 3 cut(s) | 326, 628, 865 |
| Hpy188I | TCNGA | 4 cut(s) | 331, 424, 570, 775 |
| Hpy188III | TCNNGA | 1 cut(s) | 587 |
| HpyAV | CCTTC | 3 cut(s) | 76, 199, 436 |
| HpyCH4III | ACNGT | 2 cut(s) | 254, 625 |
| HpyCH4IV | ACGT | 2 cut(s) | 396, 658 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 158 |
| HpyF3I | CTNAG | 1 cut(s) | 818 |
| HpySE526I | ACGT | 2 cut(s) | 396, 658 |
| Hsp92II | CATG | 4 cut(s) | 94, 247, 376, 580 |
| Ksp22I | TGATCA | 1 cut(s) | 670 |
| Kzo9I | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| LpnPI | CCDG | 9 cut(s) | 30, 45, 159, 516, 538, 565, 675, 699, 819 |
| Lsp1109I | GCAGC | 1 cut(s) | 161 |
| LweI | GCATC | 2 cut(s) | 292, 463 |
| MaeII | ACGT | 2 cut(s) | 396, 658 |
| MaeIII | GTNAC | 2 cut(s) | 392, 708 |
| MalI | GATC | 5 cut(s) | 64, 468, 567, 672, 751 |
| MboI | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| MboII | GAAGA | 4 cut(s) | 149, 711, 712, 788 |
| MflI | RGATCY | 1 cut(s) | 62 |
| MhlI | GDGCHC | 2 cut(s) | 11, 586 |
| MluCI | AATT | 7 cut(s) | 293, 317, 349, 459, 493, 769, 844 |
| MlyI | GAGTC | 1 cut(s) | 335 |
| MmeI | TCCRAC | 1 cut(s) | 90 |
| MnlI | CCTC | 3 cut(s) | 228, 231, 583 |
| MseI | TTAA | 8 cut(s) | 33, 131, 321, 726, 744, 762, 840, 855 |
| MspA1I | CMGCKG | 1 cut(s) | 520 |
| MspR9I | CCNGG | 1 cut(s) | 553 |
| MvaI | CCWGG | 1 cut(s) | 553 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 158 |
| NdeI | CATATG | 1 cut(s) | 483 |
| NdeII | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| NlaIII | CATG | 4 cut(s) | 94, 247, 376, 580 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| PfeI | GAWTC | 2 cut(s) | 628, 865 |
| PkrI | GCNGC | 1 cut(s) | 151 |
| PleI | GAGTC | 1 cut(s) | 334 |
| PpsI | GAGTC | 1 cut(s) | 334 |
| Psp6I | CCWGG | 1 cut(s) | 551 |
| PspGI | CCWGG | 1 cut(s) | 551 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 240 |
| PstI | CTGCAG | 1 cut(s) | 151 |
| PsuI | RGATCY | 1 cut(s) | 62 |
| PvuII | CAGCTG | 1 cut(s) | 520 |
| RsaI | GTAC | 1 cut(s) | 169 |
| RsaNI | GTAC | 1 cut(s) | 168 |
| SaqAI | TTAA | 8 cut(s) | 33, 131, 321, 726, 744, 762, 840, 855 |
| SatI | GCNGC | 1 cut(s) | 150 |
| Sau3AI | GATC | 5 cut(s) | 62, 466, 565, 670, 749 |
| Sau96I | GGNCC | 1 cut(s) | 240 |
| SchI | GAGTC | 1 cut(s) | 335 |
| ScrFI | CCNGG | 1 cut(s) | 553 |
| SduI | GDGCHC | 2 cut(s) | 11, 586 |
| SfaNI | GCATC | 2 cut(s) | 292, 463 |
| SfcI | CTRYAG | 1 cut(s) | 147 |
| SmlI | CTYRAG | 2 cut(s) | 449, 585 |
| SmoI | CTYRAG | 2 cut(s) | 449, 585 |
| Sse9I | AATT | 7 cut(s) | 293, 317, 349, 459, 493, 769, 844 |
| SspI | AATATT | 1 cut(s) | 46 |
| StyD4I | CCNGG | 1 cut(s) | 551 |
| TaaI | ACNGT | 2 cut(s) | 254, 625 |
| TaiI | ACGT | 2 cut(s) | 399, 661 |
| TaqI | TCGA | 3 cut(s) | 5, 120, 748 |
| TasI | AATT | 7 cut(s) | 293, 317, 349, 459, 493, 769, 844 |
| TatI | WGTACW | 1 cut(s) | 167 |
| TfiI | GAWTC | 2 cut(s) | 628, 865 |
| Tru1I | TTAA | 8 cut(s) | 33, 131, 321, 726, 744, 762, 840, 855 |
| Tru9I | TTAA | 8 cut(s) | 33, 131, 321, 726, 744, 762, 840, 855 |
| TscAI | CASTG | 3 cut(s) | 259, 312, 838 |
| TseI | GCWGC | 1 cut(s) | 149 |
| TspDTI | ATGAA | 2 cut(s) | 192, 389 |
| TspRI | CASTG | 3 cut(s) | 259, 312, 838 |
| XapI | RAATTY | 3 cut(s) | 317, 349, 493 |