gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 4 - 81 | 3.3e-09 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 25 |
| AcoI | YGGCCR | 1 cut(s) | 60 |
| AfaI | GTAC | 1 cut(s) | 464 |
| AgsI | TTSAA | 2 cut(s) | 235, 355 |
| AluBI | AGCT | 1 cut(s) | 162 |
| AluI | AGCT | 1 cut(s) | 162 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| Alw26I | GTCTC | 1 cut(s) | 252 |
| Alw44I | GTGCAC | 1 cut(s) | 110 |
| AlwI | GGATC | 1 cut(s) | 25 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApaLI | GTGCAC | 1 cut(s) | 110 |
| AseI | ATTAAT | 1 cut(s) | 192 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 382 |
| AspS9I | GGNCC | 1 cut(s) | 455 |
| AvaII | GGWCC | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 1 cut(s) | 114 |
| BalI | TGGCCA | 1 cut(s) | 62 |
| BbsI | GAAGAC | 1 cut(s) | 434 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BccI | CCATC | 2 cut(s) | 8, 215 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BcoDI | GTCTC | 1 cut(s) | 252 |
| BfaI | CTAG | 1 cut(s) | 375 |
| Bme18I | GGWCC | 1 cut(s) | 455 |
| BmgT120I | GGNCC | 1 cut(s) | 455 |
| BmiI | GGNNCC | 1 cut(s) | 391 |
| BpiI | GAAGAC | 1 cut(s) | 434 |
| BsaBI | GATNNNNATC | 1 cut(s) | 206 |
| BsaI | GGTCTC | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 1 cut(s) | 78 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 16, 46 |
| Bse1I | ACTGG | 1 cut(s) | 255 |
| Bse8I | GATNNNNATC | 1 cut(s) | 206 |
| BseDI | CCNNGG | 1 cut(s) | 78 |
| BseJI | GATNNNNATC | 1 cut(s) | 206 |
| BseNI | ACTGG | 1 cut(s) | 255 |
| BseSI | GKGCMC | 1 cut(s) | 114 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BsmAI | GTCTC | 1 cut(s) | 252 |
| BsmI | GAATGC | 1 cut(s) | 350 |
| BsnI | GGCC | 1 cut(s) | 62 |
| Bso31I | GGTCTC | 1 cut(s) | 252 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp143I | GATC | 3 cut(s) | 17, 97, 507 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspLI | GGNNCC | 1 cut(s) | 391 |
| BspPI | GGATC | 1 cut(s) | 25 |
| BspTNI | GGTCTC | 1 cut(s) | 252 |
| BsrI | ACTGG | 1 cut(s) | 255 |
| BssECI | CCNNGG | 1 cut(s) | 78 |
| BssMI | GATC | 3 cut(s) | 17, 97, 507 |
| BssT1I | CCWWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 2 cut(s) | 279, 348 |
| BstKTI | GATC | 3 cut(s) | 20, 100, 510 |
| BstMAI | GTCTC | 1 cut(s) | 252 |
| BstMBI | GATC | 3 cut(s) | 17, 97, 507 |
| BstNSI | RCATGY | 1 cut(s) | 281 |
| BstSLI | GKGCMC | 1 cut(s) | 114 |
| BstV2I | GAAGAC | 1 cut(s) | 434 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BtsI | GCAGTG | 1 cut(s) | 400 |
| BtsIMutI | CAGTG | 3 cut(s) | 93, 128, 400 |
| Cac8I | GCNNGC | 2 cut(s) | 279, 348 |
| Cfr13I | GGNCC | 1 cut(s) | 455 |
| Csp6I | GTAC | 1 cut(s) | 463 |
| CviAII | CATG | 4 cut(s) | 11, 58, 115, 278 |
| CviJI | RGCY | 3 cut(s) | 62, 119, 162 |
| CviKI_1 | RGCY | 3 cut(s) | 62, 119, 162 |
| CviQI | GTAC | 1 cut(s) | 463 |
| DpnI | GATC | 3 cut(s) | 19, 99, 509 |
| DpnII | GATC | 3 cut(s) | 17, 97, 507 |
| EaeI | YGGCCR | 1 cut(s) | 60 |
| Eco130I | CCWWGG | 1 cut(s) | 78 |
| Eco31I | GGTCTC | 1 cut(s) | 252 |
| Eco47I | GGWCC | 1 cut(s) | 455 |
| EcoT14I | CCWWGG | 1 cut(s) | 78 |
| ErhI | CCWWGG | 1 cut(s) | 78 |
| FaeI | CATG | 4 cut(s) | 14, 61, 118, 281 |
| FaiI | YATR | 9 cut(s) | 12, 59, 116, 144, 165, 252, 279, 416, 425 |
| FatI | CATG | 4 cut(s) | 10, 57, 114, 277 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| FspBI | CTAG | 1 cut(s) | 375 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| Hin1II | CATG | 4 cut(s) | 14, 61, 118, 281 |
| HincII | GTYRAC | 3 cut(s) | 55, 313, 420 |
| HindII | GTYRAC | 3 cut(s) | 55, 313, 420 |
| HpaI | GTTAAC | 3 cut(s) | 55, 313, 420 |
| Hpy166II | GTNNAC | 5 cut(s) | 35, 55, 112, 313, 420 |
| Hpy188I | TCNGA | 2 cut(s) | 471, 504 |
| Hpy188III | TCNNGA | 1 cut(s) | 453 |
| Hpy8I | GTNNAC | 5 cut(s) | 35, 55, 112, 313, 420 |
| HpyCH4III | ACNGT | 1 cut(s) | 132 |
| HpyCH4V | TGCA | 5 cut(s) | 112, 277, 350, 405, 437 |
| Hsp92II | CATG | 4 cut(s) | 14, 61, 118, 281 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| KspAI | GTTAAC | 3 cut(s) | 55, 313, 420 |
| Kzo9I | GATC | 3 cut(s) | 17, 97, 507 |
| LmnI | GCTCC | 1 cut(s) | 186 |
| LpnPI | CCDG | 5 cut(s) | 6, 267, 268, 372, 438 |
| MaeI | CTAG | 1 cut(s) | 375 |
| MalI | GATC | 3 cut(s) | 19, 99, 509 |
| MboI | GATC | 3 cut(s) | 17, 97, 507 |
| MboII | GAAGA | 2 cut(s) | 247, 439 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MlsI | TGGCCA | 1 cut(s) | 62 |
| MluCI | AATT | 3 cut(s) | 47, 68, 197 |
| MluNI | TGGCCA | 1 cut(s) | 62 |
| MnlI | CCTC | 2 cut(s) | 237, 288 |
| Mox20I | TGGCCA | 1 cut(s) | 62 |
| MroXI | GAANNNNTTC | 1 cut(s) | 382 |
| MscI | TGGCCA | 1 cut(s) | 62 |
| MseI | TTAA | 6 cut(s) | 54, 71, 192, 312, 419, 480 |
| Msp20I | TGGCCA | 1 cut(s) | 62 |
| Mva1269I | GAATGC | 1 cut(s) | 350 |
| NdeII | GATC | 3 cut(s) | 17, 97, 507 |
| NlaIII | CATG | 4 cut(s) | 14, 61, 118, 281 |
| NlaIV | GGNNCC | 1 cut(s) | 391 |
| NspI | RCATGY | 1 cut(s) | 281 |
| PaeI | GCATGC | 1 cut(s) | 281 |
| PctI | GAATGC | 1 cut(s) | 350 |
| PdmI | GAANNNNTTC | 1 cut(s) | 382 |
| PshBI | ATTAAT | 1 cut(s) | 192 |
| PspN4I | GGNNCC | 1 cut(s) | 391 |
| PspPI | GGNCC | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 464 |
| RsaNI | GTAC | 1 cut(s) | 463 |
| SaqAI | TTAA | 6 cut(s) | 54, 71, 192, 312, 419, 480 |
| Sau3AI | GATC | 3 cut(s) | 17, 97, 507 |
| Sau96I | GGNCC | 1 cut(s) | 455 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SetI | ASST | 2 cut(s) | 164, 248 |
| SinI | GGWCC | 1 cut(s) | 455 |
| SphI | GCATGC | 1 cut(s) | 281 |
| Sse9I | AATT | 3 cut(s) | 47, 68, 197 |
| SspMI | CTAG | 1 cut(s) | 375 |
| StyI | CCWWGG | 1 cut(s) | 78 |
| TaaI | ACNGT | 1 cut(s) | 132 |
| TasI | AATT | 3 cut(s) | 47, 68, 197 |
| TatI | WGTACW | 1 cut(s) | 462 |
| Tru1I | TTAA | 6 cut(s) | 54, 71, 192, 312, 419, 480 |
| Tru9I | TTAA | 6 cut(s) | 54, 71, 192, 312, 419, 480 |
| TscAI | CASTG | 3 cut(s) | 100, 135, 407 |
| TspDTI | ATGAA | 2 cut(s) | 210, 440 |
| TspRI | CASTG | 3 cut(s) | 100, 135, 407 |
| VneI | GTGCAC | 1 cut(s) | 110 |
| VpaK11BI | GGWCC | 1 cut(s) | 455 |
| VspI | ATTAAT | 1 cut(s) | 192 |
| XceI | RCATGY | 1 cut(s) | 281 |
| XmnI | GAANNNNTTC | 1 cut(s) | 382 |
| XspI | CTAG | 1 cut(s) | 375 |