gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 48 - 196 | 2.5e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 436, 601 |
| AclWI | GGATC | 2 cut(s) | 174, 581 |
| AcoI | YGGCCR | 1 cut(s) | 693 |
| AfaI | GTAC | 2 cut(s) | 211, 353 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 795 |
| AgsI | TTSAA | 5 cut(s) | 10, 130, 349, 681, 721 |
| AluBI | AGCT | 6 cut(s) | 47, 256, 320, 421, 649, 686 |
| AluI | AGCT | 6 cut(s) | 47, 256, 320, 421, 649, 686 |
| Alw21I | GWGCWC | 2 cut(s) | 143, 423 |
| AlwI | GGATC | 2 cut(s) | 174, 581 |
| AoxI | GGCC | 2 cut(s) | 693, 707 |
| ApeKI | GCWGC | 2 cut(s) | 317, 686 |
| AspS9I | GGNCC | 1 cut(s) | 498 |
| AsuNHI | GCTAGC | 1 cut(s) | 256 |
| AvaII | GGWCC | 1 cut(s) | 498 |
| BalI | TGGCCA | 1 cut(s) | 695 |
| BanII | GRGCYC | 1 cut(s) | 423 |
| Bbv12I | GWGCWC | 2 cut(s) | 143, 423 |
| BbvI | GCAGC | 2 cut(s) | 329, 673 |
| BccI | CCATC | 2 cut(s) | 421, 557 |
| BclI | TGATCA | 1 cut(s) | 393 |
| BfaI | CTAG | 5 cut(s) | 53, 257, 321, 533, 570 |
| BfmI | CTRYAG | 4 cut(s) | 40, 60, 120, 687 |
| BfuAI | ACCTGC | 2 cut(s) | 436, 601 |
| BisI | GCNGC | 2 cut(s) | 318, 687 |
| BlsI | GCNGC | 2 cut(s) | 319, 688 |
| Bme18I | GGWCC | 1 cut(s) | 498 |
| BmgT120I | GGNCC | 1 cut(s) | 498 |
| BmiI | GGNNCC | 2 cut(s) | 34, 591 |
| BmsI | GCATC | 2 cut(s) | 12, 269 |
| BmtI | GCTAGC | 1 cut(s) | 260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 1 cut(s) | 635 |
| BsaJI | CCNNGG | 2 cut(s) | 330, 696 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 795 |
| Bse1I | ACTGG | 4 cut(s) | 34, 501, 530, 772 |
| BseDI | CCNNGG | 2 cut(s) | 330, 696 |
| BseGI | GGATG | 2 cut(s) | 445, 565 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 795 |
| BseMII | CTCAG | 3 cut(s) | 99, 243, 427 |
| BseNI | ACTGG | 4 cut(s) | 34, 501, 530, 772 |
| BseRI | GAGGAG | 1 cut(s) | 824 |
| BseXI | GCAGC | 2 cut(s) | 329, 673 |
| BsgI | GTGCAG | 1 cut(s) | 748 |
| BshFI | GGCC | 2 cut(s) | 695, 709 |
| BsiHKAI | GWGCWC | 2 cut(s) | 143, 423 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 795 |
| BsmI | GAATGC | 1 cut(s) | 84 |
| BsnI | GGCC | 2 cut(s) | 695, 709 |
| Bsp1286I | GDGCHC | 2 cut(s) | 143, 423 |
| Bsp143I | GATC | 3 cut(s) | 179, 393, 573 |
| BspANI | GGCC | 2 cut(s) | 695, 709 |
| BspCNI | CTCAG | 3 cut(s) | 100, 244, 426 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 34, 591 |
| BspMAI | CTGCAG | 1 cut(s) | 691 |
| BspMI | ACCTGC | 2 cut(s) | 436, 601 |
| BspOI | GCTAGC | 1 cut(s) | 260 |
| BspPI | GGATC | 2 cut(s) | 174, 581 |
| BsrI | ACTGG | 4 cut(s) | 34, 501, 530, 772 |
| BssECI | CCNNGG | 2 cut(s) | 330, 696 |
| BssMI | GATC | 3 cut(s) | 179, 393, 573 |
| BssT1I | CCWWGG | 2 cut(s) | 330, 696 |
| Bst4CI | ACNGT | 3 cut(s) | 14, 229, 482 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 1 cut(s) | 258 |
| BstDEI | CTNAG | 7 cut(s) | 108, 195, 252, 288, 413, 494, 672 |
| BstF5I | GGATG | 2 cut(s) | 445, 565 |
| BstKTI | GATC | 3 cut(s) | 182, 396, 576 |
| BstMBI | GATC | 3 cut(s) | 179, 393, 573 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 317, 451, 692, 732 |
| BstSFI | CTRYAG | 4 cut(s) | 40, 60, 120, 687 |
| BstV1I | GCAGC | 2 cut(s) | 329, 673 |
| BstX2I | RGATCY | 1 cut(s) | 179 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 190, 556 |
| BstYI | RGATCY | 1 cut(s) | 179 |
| BsuRI | GGCC | 2 cut(s) | 695, 709 |
| BtsCI | GGATG | 2 cut(s) | 445, 565 |
| BtsI | GCAGTG | 1 cut(s) | 696 |
| BtsIMutI | CAGTG | 3 cut(s) | 19, 696, 765 |
| BveI | ACCTGC | 2 cut(s) | 436, 601 |
| Cac8I | GCNNGC | 1 cut(s) | 258 |
| CciI | TCATGA | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 1 cut(s) | 498 |
| Csp6I | GTAC | 2 cut(s) | 210, 352 |
| CviAII | CATG | 4 cut(s) | 83, 341, 355, 751 |
| CviQI | GTAC | 2 cut(s) | 210, 352 |
| DdeI | CTNAG | 7 cut(s) | 108, 195, 252, 288, 413, 494, 672 |
| DpnI | GATC | 3 cut(s) | 181, 395, 575 |
| DpnII | GATC | 3 cut(s) | 179, 393, 573 |
| DraI | TTTAAA | 1 cut(s) | 295 |
| EaeI | YGGCCR | 1 cut(s) | 693 |
| Ecl136II | GAGCTC | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 2 cut(s) | 330, 696 |
| Eco24I | GRGCYC | 1 cut(s) | 423 |
| Eco47I | GGWCC | 1 cut(s) | 498 |
| Eco53kI | GAGCTC | 1 cut(s) | 421 |
| EcoICRI | GAGCTC | 1 cut(s) | 421 |
| EcoT14I | CCWWGG | 2 cut(s) | 330, 696 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 423 |
| ErhI | CCWWGG | 2 cut(s) | 330, 696 |
| FaeI | CATG | 4 cut(s) | 86, 344, 358, 754 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 713, 745 |
| FatI | CATG | 4 cut(s) | 82, 340, 354, 750 |
| FbaI | TGATCA | 1 cut(s) | 393 |
| Fnu4HI | GCNGC | 2 cut(s) | 318, 687 |
| FokI | GGATG | 2 cut(s) | 452, 572 |
| FriOI | GRGCYC | 1 cut(s) | 423 |
| Fsp4HI | GCNGC | 2 cut(s) | 318, 687 |
| FspBI | CTAG | 5 cut(s) | 53, 257, 321, 533, 570 |
| GluI | GCNGC | 2 cut(s) | 318, 687 |
| HaeIII | GGCC | 2 cut(s) | 695, 709 |
| Hin1II | CATG | 4 cut(s) | 86, 344, 358, 754 |
| HinfI | GANTC | 7 cut(s) | 56, 199, 411, 529, 566, 799, 814 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy188III | TCNNGA | 5 cut(s) | 19, 272, 341, 424, 533 |
| HpyCH4III | ACNGT | 3 cut(s) | 14, 229, 482 |
| HpyCH4V | TGCA | 6 cut(s) | 82, 454, 461, 689, 735, 765 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 317, 451, 692, 732 |
| HpyF3I | CTNAG | 7 cut(s) | 108, 195, 252, 288, 413, 494, 672 |
| Hsp92II | CATG | 4 cut(s) | 86, 344, 358, 754 |
| Ksp22I | TGATCA | 1 cut(s) | 393 |
| Kzo9I | GATC | 3 cut(s) | 179, 393, 573 |
| LmnI | GCTCC | 1 cut(s) | 418 |
| Lsp1109I | GCAGC | 2 cut(s) | 329, 673 |
| LweI | GCATC | 2 cut(s) | 12, 269 |
| MaeI | CTAG | 5 cut(s) | 53, 257, 321, 533, 570 |
| MaeIII | GTNAC | 1 cut(s) | 503 |
| MalI | GATC | 3 cut(s) | 181, 395, 575 |
| MboI | GATC | 3 cut(s) | 179, 393, 573 |
| MboII | GAAGA | 4 cut(s) | 257, 400, 575, 593 |
| MflI | RGATCY | 1 cut(s) | 179 |
| MhlI | GDGCHC | 2 cut(s) | 143, 423 |
| MlsI | TGGCCA | 1 cut(s) | 695 |
| MluCI | AATT | 1 cut(s) | 778 |
| MluNI | TGGCCA | 1 cut(s) | 695 |
| MlyI | GAGTC | 2 cut(s) | 405, 523 |
| MnlI | CCTC | 4 cut(s) | 103, 223, 620, 802 |
| Mox20I | TGGCCA | 1 cut(s) | 695 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MscI | TGGCCA | 1 cut(s) | 695 |
| MseI | TTAA | 2 cut(s) | 294, 606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 554 |
| Msp20I | TGGCCA | 1 cut(s) | 695 |
| MspA1I | CMGCKG | 1 cut(s) | 686 |
| Mva1269I | GAATGC | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 317, 451, 692, 732 |
| NdeII | GATC | 3 cut(s) | 179, 393, 573 |
| NheI | GCTAGC | 1 cut(s) | 256 |
| NlaIII | CATG | 4 cut(s) | 86, 344, 358, 754 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 591 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PctI | GAATGC | 1 cut(s) | 84 |
| PfeI | GAWTC | 5 cut(s) | 56, 199, 566, 799, 814 |
| PkrI | GCNGC | 2 cut(s) | 319, 688 |
| PleI | GAGTC | 2 cut(s) | 405, 523 |
| PpsI | GAGTC | 2 cut(s) | 405, 523 |
| Psp124BI | GAGCTC | 1 cut(s) | 423 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 591 |
| PspPI | GGNCC | 1 cut(s) | 498 |
| PstI | CTGCAG | 1 cut(s) | 691 |
| PsuI | RGATCY | 1 cut(s) | 179 |
| PvuII | CAGCTG | 1 cut(s) | 686 |
| RsaI | GTAC | 2 cut(s) | 211, 353 |
| RsaNI | GTAC | 2 cut(s) | 210, 352 |
| RseI | CAYNNNNRTG | 1 cut(s) | 554 |
| SacI | GAGCTC | 1 cut(s) | 423 |
| SaqAI | TTAA | 2 cut(s) | 294, 606 |
| SatI | GCNGC | 2 cut(s) | 318, 687 |
| Sau3AI | GATC | 3 cut(s) | 179, 393, 573 |
| Sau96I | GGNCC | 1 cut(s) | 498 |
| SchI | GAGTC | 2 cut(s) | 405, 523 |
| SduI | GDGCHC | 2 cut(s) | 143, 423 |
| SfaNI | GCATC | 2 cut(s) | 12, 269 |
| SfcI | CTRYAG | 4 cut(s) | 40, 60, 120, 687 |
| SinI | GGWCC | 1 cut(s) | 498 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 554 |
| SmlI | CTYRAG | 1 cut(s) | 650 |
| SmoI | CTYRAG | 1 cut(s) | 650 |
| Sse9I | AATT | 1 cut(s) | 778 |
| SspMI | CTAG | 5 cut(s) | 53, 257, 321, 533, 570 |
| SstI | GAGCTC | 1 cut(s) | 423 |
| StyI | CCWWGG | 2 cut(s) | 330, 696 |
| TaaI | ACNGT | 3 cut(s) | 14, 229, 482 |
| TasI | AATT | 1 cut(s) | 778 |
| TatI | WGTACW | 1 cut(s) | 351 |
| TfiI | GAWTC | 5 cut(s) | 56, 199, 566, 799, 814 |
| Tru1I | TTAA | 2 cut(s) | 294, 606 |
| Tru9I | TTAA | 2 cut(s) | 294, 606 |
| TscAI | CASTG | 3 cut(s) | 19, 696, 772 |
| TseI | GCWGC | 2 cut(s) | 317, 686 |
| TspDTI | ATGAA | 8 cut(s) | 17, 147, 329, 401, 552, 576, 767, 791 |
| TspRI | CASTG | 3 cut(s) | 19, 696, 772 |
| VpaK11BI | GGWCC | 1 cut(s) | 498 |
| XbaI | TCTAGA | 1 cut(s) | 532 |
| XspI | CTAG | 5 cut(s) | 53, 257, 321, 533, 570 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |