Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 930 |
| Acc36I | ACCTGC | 1 cut(s) | 145 |
| AclWI | GGATC | 3 cut(s) | 116, 129, 2477 |
| AcsI | RAATTY | 8 cut(s) | 507, 670, 923, 951, 1128, 1331, 1731, 1997 |
| AcuI | CTGAAG | 1 cut(s) | 252 |
| AfaI | GTAC | 4 cut(s) | 389, 515, 2049, 2124 |
| AflII | CTTAAG | 1 cut(s) | 587 |
| AjnI | CCWGG | 3 cut(s) | 84, 93, 1147 |
| AluBI | AGCT | 7 cut(s) | 236, 660, 836, 862, 884, 1376, 2188 |
| AluI | AGCT | 7 cut(s) | 236, 660, 836, 862, 884, 1376, 2188 |
| Alw26I | GTCTC | 4 cut(s) | 63, 569, 1710, 2064 |
| AlwI | GGATC | 3 cut(s) | 116, 129, 2477 |
| AoxI | GGCC | 3 cut(s) | 201, 2197, 2294 |
| ApeKI | GCWGC | 2 cut(s) | 140, 2188 |
| ApoI | RAATTY | 8 cut(s) | 507, 670, 923, 951, 1128, 1331, 1731, 1997 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2291, 2323 |
| AseI | ATTAAT | 1 cut(s) | 1098 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 755, 1254, 2001, 2241 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AsuHPI | GGTGA | 8 cut(s) | 598, 1023, 1103, 1163, 1474, 1605, 2157, 2171 |
| AxyI | CCTNAGG | 1 cut(s) | 1749 |
| BamHI | GGATCC | 1 cut(s) | 121 |
| BbsI | GAAGAC | 1 cut(s) | 1482 |
| BbvI | GCAGC | 2 cut(s) | 127, 2175 |
| BccI | CCATC | 3 cut(s) | 566, 704, 791 |
| BciT130I | CCWGG | 3 cut(s) | 86, 95, 1149 |
| BciVI | GTATCC | 1 cut(s) | 2504 |
| BclI | TGATCA | 2 cut(s) | 348, 994 |
| BcoDI | GTCTC | 4 cut(s) | 63, 569, 1710, 2064 |
| BfaI | CTAG | 4 cut(s) | 1554, 1673, 1821, 2253 |
| BfrI | CTTAAG | 1 cut(s) | 587 |
| BfuAI | ACCTGC | 1 cut(s) | 145 |
| BfuI | GTATCC | 1 cut(s) | 2504 |
| BisI | GCNGC | 2 cut(s) | 141, 2189 |
| BlsI | GCNGC | 2 cut(s) | 142, 2190 |
| BmcAI | AGTACT | 1 cut(s) | 2124 |
| Bme1390I | CCNGG | 3 cut(s) | 86, 95, 1149 |
| BmiI | GGNNCC | 4 cut(s) | 123, 135, 695, 944 |
| BmrFI | CCNGG | 3 cut(s) | 86, 95, 1149 |
| BmrI | ACTGGG | 1 cut(s) | 336 |
| BmsI | GCATC | 8 cut(s) | 27, 387, 1006, 1028, 1513, 1621, 1826, 2455 |
| BmuI | ACTGGG | 1 cut(s) | 336 |
| BpiI | GAAGAC | 1 cut(s) | 1482 |
| BpmI | CTGGAG | 1 cut(s) | 556 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1305 |
| BsaJI | CCNNGG | 1 cut(s) | 85 |
| BsaWI | WCCGGW | 1 cut(s) | 1132 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1409, 1439, 2143, 2173 |
| Bse1I | ACTGG | 7 cut(s) | 135, 331, 539, 1259, 1563, 1861, 2200 |
| Bse21I | CCTNAGG | 1 cut(s) | 1749 |
| Bse3DI | GCAATG | 3 cut(s) | 231, 288, 1116 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1305 |
| BseBI | CCWGG | 3 cut(s) | 86, 95, 1149 |
| BseDI | CCNNGG | 1 cut(s) | 85 |
| BseGI | GGATG | 3 cut(s) | 1426, 1499, 1696 |
| BseJI | GATNNNNATC | 1 cut(s) | 1305 |
| BseMI | GCAATG | 3 cut(s) | 231, 288, 1116 |
| BseMII | CTCAG | 3 cut(s) | 570, 1314, 1740 |
| BseNI | ACTGG | 7 cut(s) | 135, 331, 539, 1259, 1563, 1861, 2200 |
| BseRI | GAGGAG | 2 cut(s) | 587, 955 |
| BseXI | GCAGC | 2 cut(s) | 127, 2175 |
| BsgI | GTGCAG | 2 cut(s) | 1790, 2174 |
| BshFI | GGCC | 3 cut(s) | 203, 2199, 2296 |
| BsiSI | CCGG | 1 cut(s) | 1133 |
| BslFI | GGGAC | 1 cut(s) | 2106 |
| BsmAI | GTCTC | 4 cut(s) | 63, 569, 1710, 2064 |
| BsmFI | GGGAC | 1 cut(s) | 2106 |
| BsmI | GAATGC | 1 cut(s) | 2459 |
| BsnI | GGCC | 3 cut(s) | 203, 2199, 2296 |
| Bsp1407I | TGTACA | 1 cut(s) | 513 |
| Bsp143I | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| BspANI | GGCC | 3 cut(s) | 203, 2199, 2296 |
| BspCNI | CTCAG | 3 cut(s) | 571, 1315, 1741 |
| BspHI | TCATGA | 1 cut(s) | 336 |
| BspLI | GGNNCC | 4 cut(s) | 123, 135, 695, 944 |
| BspMI | ACCTGC | 1 cut(s) | 145 |
| BspPI | GGATC | 3 cut(s) | 116, 129, 2477 |
| BspQI | GCTCTTC | 1 cut(s) | 1719 |
| BspTI | CTTAAG | 1 cut(s) | 587 |
| BsrDI | GCAATG | 3 cut(s) | 231, 288, 1116 |
| BsrGI | TGTACA | 1 cut(s) | 513 |
| BsrI | ACTGG | 7 cut(s) | 135, 331, 539, 1259, 1563, 1861, 2200 |
| BssECI | CCNNGG | 1 cut(s) | 85 |
| BssMI | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| Bst2UI | CCWGG | 3 cut(s) | 86, 95, 1149 |
| Bst4CI | ACNGT | 5 cut(s) | 260, 412, 442, 492, 794 |
| Bst6I | CTCTTC | 3 cut(s) | 1047, 1719, 1866 |
| BstAFI | CTTAAG | 1 cut(s) | 587 |
| BstAUI | TGTACA | 1 cut(s) | 513 |
| BstC8I | GCNNGC | 4 cut(s) | 151, 864, 1959, 2526 |
| BstDEI | CTNAG | 7 cut(s) | 579, 651, 720, 936, 1323, 1430, 1749 |
| BstF5I | GGATG | 3 cut(s) | 1426, 1499, 1696 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 8 cut(s) | 124, 210, 351, 997, 1271, 1672, 2407, 2485 |
| BstMAI | GTCTC | 4 cut(s) | 63, 569, 1710, 2064 |
| BstMBI | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 146, 762, 1658, 2534 |
| BstNI | CCWGG | 3 cut(s) | 86, 95, 1149 |
| BstNSI | RCATGY | 1 cut(s) | 2323 |
| BstSCI | CCNGG | 3 cut(s) | 84, 93, 1147 |
| BstV1I | GCAGC | 2 cut(s) | 127, 2175 |
| BstV2I | GAAGAC | 1 cut(s) | 1482 |
| BstX2I | RGATCY | 2 cut(s) | 121, 2482 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1219 |
| BstYI | RGATCY | 2 cut(s) | 121, 2482 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1749 |
| BsuI | GTATCC | 1 cut(s) | 2504 |
| BsuRI | GGCC | 3 cut(s) | 203, 2199, 2296 |
| BtsCI | GGATG | 3 cut(s) | 1426, 1499, 1696 |
| BtsI | GCAGTG | 2 cut(s) | 479, 2544 |
| BtsIMutI | CAGTG | 7 cut(s) | 128, 185, 265, 408, 479, 2207, 2544 |
| BveI | ACCTGC | 1 cut(s) | 145 |
| Cac8I | GCNNGC | 4 cut(s) | 151, 864, 1959, 2526 |
| CciI | TCATGA | 1 cut(s) | 336 |
| CfoI | GCGC | 1 cut(s) | 378 |
| CsiI | ACCWGGT | 1 cut(s) | 1147 |
| Csp6I | GTAC | 4 cut(s) | 388, 514, 2048, 2123 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1891, 1926 |
| CviQI | GTAC | 4 cut(s) | 388, 514, 2048, 2123 |
| DdeI | CTNAG | 7 cut(s) | 579, 651, 720, 936, 1323, 1430, 1749 |
| DpnI | GATC | 8 cut(s) | 123, 209, 350, 996, 1270, 1671, 2406, 2484 |
| DpnII | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| DraI | TTTAAA | 5 cut(s) | 1510, 1710, 1788, 2391, 2496 |
| Eam1104I | CTCTTC | 3 cut(s) | 1047, 1719, 1866 |
| EarI | CTCTTC | 3 cut(s) | 1047, 1719, 1866 |
| Eco147I | AGGCCT | 1 cut(s) | 2296 |
| Eco57I | CTGAAG | 1 cut(s) | 252 |
| Eco81I | CCTNAGG | 1 cut(s) | 1749 |
| EcoRII | CCWGG | 3 cut(s) | 84, 93, 1147 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 1021 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 644, 676 |
| FaqI | GGGAC | 1 cut(s) | 2106 |
| FauNDI | CATATG | 1 cut(s) | 2248 |
| FbaI | TGATCA | 2 cut(s) | 348, 994 |
| Fnu4HI | GCNGC | 2 cut(s) | 141, 2189 |
| FokI | GGATG | 3 cut(s) | 1433, 1506, 1703 |
| Fsp4HI | GCNGC | 2 cut(s) | 141, 2189 |
| FspBI | CTAG | 4 cut(s) | 1554, 1673, 1821, 2253 |
| GlaI | GCGC | 1 cut(s) | 377 |
| GluI | GCNGC | 2 cut(s) | 141, 2189 |
| GsuI | CTGGAG | 1 cut(s) | 556 |
| HaeIII | GGCC | 3 cut(s) | 203, 2199, 2296 |
| HapII | CCGG | 1 cut(s) | 1133 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HincII | GTYRAC | 2 cut(s) | 1198, 2317 |
| HindII | GTYRAC | 2 cut(s) | 1198, 2317 |
| HindIII | AAGCTT | 3 cut(s) | 658, 834, 860 |
| HinfI | GANTC | 8 cut(s) | 90, 308, 331, 449, 538, 1933, 2062, 2162 |
| HpaII | CCGG | 1 cut(s) | 1133 |
| HphI | GGTGA | 8 cut(s) | 598, 1023, 1103, 1163, 1474, 1605, 2157, 2171 |
| Hpy166II | GTNNAC | 4 cut(s) | 1198, 2207, 2317, 2419 |
| Hpy188I | TCNGA | 9 cut(s) | 313, 383, 504, 543, 709, 999, 1206, 1300, 1493 |
| Hpy8I | GTNNAC | 4 cut(s) | 1198, 2207, 2317, 2419 |
| HpyCH4III | ACNGT | 5 cut(s) | 260, 412, 442, 492, 794 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 146, 762, 1658, 2534 |
| HpyF3I | CTNAG | 7 cut(s) | 579, 651, 720, 936, 1323, 1430, 1749 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Ksp22I | TGATCA | 2 cut(s) | 348, 994 |
| Kzo9I | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| LguI | GCTCTTC | 1 cut(s) | 1719 |
| LmnI | GCTCC | 3 cut(s) | 847, 942, 2534 |
| Lsp1109I | GCAGC | 2 cut(s) | 127, 2175 |
| LweI | GCATC | 8 cut(s) | 27, 387, 1006, 1028, 1513, 1621, 1826, 2455 |
| MabI | ACCWGGT | 1 cut(s) | 1147 |
| MaeI | CTAG | 4 cut(s) | 1554, 1673, 1821, 2253 |
| MaeIII | GTNAC | 5 cut(s) | 260, 436, 604, 1462, 1852 |
| MalI | GATC | 8 cut(s) | 123, 209, 350, 996, 1270, 1671, 2406, 2484 |
| MboI | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| MfeI | CAATTG | 1 cut(s) | 1167 |
| MflI | RGATCY | 2 cut(s) | 121, 2482 |
| MlyI | GAGTC | 1 cut(s) | 547 |
| MmeI | TCCRAC | 3 cut(s) | 394, 754, 874 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 1021 |
| MroXI | GAANNNNTTC | 4 cut(s) | 755, 1254, 2001, 2241 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1314, 2519 |
| MspCI | CTTAAG | 1 cut(s) | 587 |
| MspI | CCGG | 1 cut(s) | 1133 |
| MspR9I | CCNGG | 3 cut(s) | 86, 95, 1149 |
| MunI | CAATTG | 1 cut(s) | 1167 |
| Mva1269I | GAATGC | 1 cut(s) | 2459 |
| MvaI | CCWGG | 3 cut(s) | 86, 95, 1149 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 146, 762, 1658, 2534 |
| NdeI | CATATG | 1 cut(s) | 2248 |
| NdeII | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| NlaIV | GGNNCC | 4 cut(s) | 123, 135, 695, 944 |
| NmuCI | GTSAC | 4 cut(s) | 260, 436, 604, 1462 |
| NsiI | ATGCAT | 2 cut(s) | 6, 1021 |
| NspI | RCATGY | 1 cut(s) | 2323 |
| PagI | TCATGA | 1 cut(s) | 336 |
| PceI | AGGCCT | 1 cut(s) | 2296 |
| PciSI | GCTCTTC | 1 cut(s) | 1719 |
| PctI | GAATGC | 1 cut(s) | 2459 |
| PdmI | GAANNNNTTC | 4 cut(s) | 755, 1254, 2001, 2241 |
| PfeI | GAWTC | 7 cut(s) | 90, 308, 331, 449, 1933, 2062, 2162 |
| PfoI | TCCNGGA | 1 cut(s) | 93 |
| PkrI | GCNGC | 2 cut(s) | 142, 2190 |
| PleI | GAGTC | 1 cut(s) | 546 |
| PpsI | GAGTC | 1 cut(s) | 546 |
| PshBI | ATTAAT | 1 cut(s) | 1098 |
| PsiI | TTATAA | 1 cut(s) | 930 |
| Psp6I | CCWGG | 3 cut(s) | 84, 93, 1147 |
| PspGI | CCWGG | 3 cut(s) | 84, 93, 1147 |
| PspN4I | GGNNCC | 4 cut(s) | 123, 135, 695, 944 |
| PsuI | RGATCY | 2 cut(s) | 121, 2482 |
| RsaI | GTAC | 4 cut(s) | 389, 515, 2049, 2124 |
| RsaNI | GTAC | 4 cut(s) | 388, 514, 2048, 2123 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1314, 2519 |
| SapI | GCTCTTC | 1 cut(s) | 1719 |
| SatI | GCNGC | 2 cut(s) | 141, 2189 |
| Sau3AI | GATC | 8 cut(s) | 121, 207, 348, 994, 1268, 1669, 2404, 2482 |
| ScaI | AGTACT | 1 cut(s) | 2124 |
| SchI | GAGTC | 1 cut(s) | 547 |
| ScrFI | CCNGG | 3 cut(s) | 86, 95, 1149 |
| SexAI | ACCWGGT | 1 cut(s) | 1147 |
| SfaNI | GCATC | 8 cut(s) | 27, 387, 1006, 1028, 1513, 1621, 1826, 2455 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1314, 2519 |
| SmlI | CTYRAG | 1 cut(s) | 587 |
| SmoI | CTYRAG | 1 cut(s) | 587 |
| SseBI | AGGCCT | 1 cut(s) | 2296 |
| SspI | AATATT | 1 cut(s) | 2242 |
| SspMI | CTAG | 4 cut(s) | 1554, 1673, 1821, 2253 |
| StuI | AGGCCT | 1 cut(s) | 2296 |
| StyD4I | CCNGG | 3 cut(s) | 84, 93, 1147 |
| TaaI | ACNGT | 5 cut(s) | 260, 412, 442, 492, 794 |
| TaqI | TCGA | 3 cut(s) | 75, 911, 1988 |
| TatI | WGTACW | 4 cut(s) | 387, 513, 2047, 2122 |
| TfiI | GAWTC | 7 cut(s) | 90, 308, 331, 449, 1933, 2062, 2162 |
| TscAI | CASTG | 7 cut(s) | 135, 185, 265, 415, 486, 2207, 2544 |
| TseFI | GTSAC | 4 cut(s) | 260, 436, 604, 1462 |
| TseI | GCWGC | 2 cut(s) | 140, 2188 |
| Tsp45I | GTSAC | 4 cut(s) | 260, 436, 604, 1462 |
| TspGWI | ACGGA | 1 cut(s) | 1487 |
| TspRI | CASTG | 7 cut(s) | 135, 185, 265, 415, 486, 2207, 2544 |
| Vha464I | CTTAAG | 1 cut(s) | 587 |
| VspI | ATTAAT | 1 cut(s) | 1098 |
| XapI | RAATTY | 8 cut(s) | 507, 670, 923, 951, 1128, 1331, 1731, 1997 |
| XbaI | TCTAGA | 2 cut(s) | 1672, 1820 |
| XceI | RCATGY | 1 cut(s) | 2323 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 616 |
| XmnI | GAANNNNTTC | 4 cut(s) | 755, 1254, 2001, 2241 |
| XspI | CTAG | 4 cut(s) | 1554, 1673, 1821, 2253 |
| ZrmI | AGTACT | 1 cut(s) | 2124 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 1021 |