gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 13 - 130 | 7.3e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 68, 152, 393 |
| AflII | CTTAAG | 1 cut(s) | 377 |
| AgsI | TTSAA | 7 cut(s) | 76, 97, 191, 217, 257, 268, 362 |
| AluBI | AGCT | 1 cut(s) | 53 |
| AluI | AGCT | 1 cut(s) | 53 |
| Alw26I | GTCTC | 1 cut(s) | 117 |
| ApoI | RAATTY | 3 cut(s) | 68, 152, 393 |
| AseI | ATTAAT | 1 cut(s) | 128 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 294, 393 |
| BccI | CCATC | 1 cut(s) | 152 |
| BcoDI | GTCTC | 1 cut(s) | 117 |
| BfmI | CTRYAG | 1 cut(s) | 18 |
| BfrI | CTTAAG | 1 cut(s) | 377 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| Bse1I | ACTGG | 1 cut(s) | 348 |
| BseGI | GGATG | 1 cut(s) | 244 |
| BseMII | CTCAG | 1 cut(s) | 296 |
| BseNI | ACTGG | 1 cut(s) | 348 |
| BseRI | GAGGAG | 1 cut(s) | 270 |
| BslFI | GGGAC | 1 cut(s) | 136 |
| BsmAI | GTCTC | 1 cut(s) | 117 |
| BsmFI | GGGAC | 1 cut(s) | 136 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspTI | CTTAAG | 1 cut(s) | 377 |
| BsrI | ACTGG | 1 cut(s) | 348 |
| BstAFI | CTTAAG | 1 cut(s) | 377 |
| BstC8I | GCNNGC | 1 cut(s) | 173 |
| BstDEI | CTNAG | 2 cut(s) | 63, 282 |
| BstF5I | GGATG | 1 cut(s) | 244 |
| BstMAI | GTCTC | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 59 |
| BstNSI | RCATGY | 2 cut(s) | 175, 185 |
| BstSFI | CTRYAG | 1 cut(s) | 18 |
| BtsCI | GGATG | 1 cut(s) | 244 |
| Cac8I | GCNNGC | 1 cut(s) | 173 |
| CviAII | CATG | 3 cut(s) | 172, 176, 182 |
| CviJI | RGCY | 3 cut(s) | 53, 134, 376 |
| CviKI_1 | RGCY | 3 cut(s) | 53, 134, 376 |
| DdeI | CTNAG | 2 cut(s) | 63, 282 |
| EcoRI | GAATTC | 1 cut(s) | 68 |
| EcoT22I | ATGCAT | 1 cut(s) | 177 |
| FaeI | CATG | 3 cut(s) | 175, 179, 185 |
| FaiI | YATR | 8 cut(s) | 20, 32, 173, 177, 183, 288, 309, 353 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 56, 88, 360, 392 |
| FaqI | GGGAC | 1 cut(s) | 136 |
| FatI | CATG | 3 cut(s) | 171, 175, 181 |
| FokI | GGATG | 1 cut(s) | 251 |
| Hin1II | CATG | 3 cut(s) | 175, 179, 185 |
| Hpy188I | TCNGA | 1 cut(s) | 300 |
| Hpy188III | TCNNGA | 4 cut(s) | 73, 97, 188, 362 |
| HpyAV | CCTTC | 2 cut(s) | 362, 366 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 175 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 2 cut(s) | 63, 282 |
| Hsp92II | CATG | 3 cut(s) | 175, 179, 185 |
| LpnPI | CCDG | 3 cut(s) | 105, 188, 361 |
| MboII | GAAGA | 1 cut(s) | 88 |
| MluCI | AATT | 6 cut(s) | 57, 68, 152, 257, 341, 393 |
| MnlI | CCTC | 4 cut(s) | 79, 288, 291, 358 |
| Mph1103I | ATGCAT | 1 cut(s) | 177 |
| MroXI | GAANNNNTTC | 2 cut(s) | 294, 393 |
| MseI | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| MslI | CAYNNNNRTG | 1 cut(s) | 180 |
| MspCI | CTTAAG | 1 cut(s) | 377 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 59 |
| NlaIII | CATG | 3 cut(s) | 175, 179, 185 |
| NsiI | ATGCAT | 1 cut(s) | 177 |
| NspI | RCATGY | 2 cut(s) | 175, 185 |
| PaeI | GCATGC | 1 cut(s) | 175 |
| PdmI | GAANNNNTTC | 2 cut(s) | 294, 393 |
| PshBI | ATTAAT | 1 cut(s) | 128 |
| RseI | CAYNNNNRTG | 1 cut(s) | 180 |
| SaqAI | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| SetI | ASST | 1 cut(s) | 55 |
| SfcI | CTRYAG | 1 cut(s) | 18 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 180 |
| SmlI | CTYRAG | 1 cut(s) | 377 |
| SmoI | CTYRAG | 1 cut(s) | 377 |
| SphI | GCATGC | 1 cut(s) | 175 |
| Sse9I | AATT | 6 cut(s) | 57, 68, 152, 257, 341, 393 |
| TasI | AATT | 6 cut(s) | 57, 68, 152, 257, 341, 393 |
| Tru1I | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| Tru9I | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| TspDTI | ATGAA | 3 cut(s) | 245, 303, 354 |
| Vha464I | CTTAAG | 1 cut(s) | 377 |
| VspI | ATTAAT | 1 cut(s) | 128 |
| XapI | RAATTY | 3 cut(s) | 68, 152, 393 |
| XceI | RCATGY | 2 cut(s) | 175, 185 |
| XmnI | GAANNNNTTC | 2 cut(s) | 294, 393 |
| Zsp2I | ATGCAT | 1 cut(s) | 177 |