gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 46 - 203 | 1.2e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 451 |
| AciI | CCGC | 1 cut(s) | 708 |
| AclWI | GGATC | 1 cut(s) | 673 |
| AcsI | RAATTY | 3 cut(s) | 31, 64, 346 |
| AcuI | CTGAAG | 1 cut(s) | 6 |
| AfaI | GTAC | 1 cut(s) | 317 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 56, 121 |
| AgsI | TTSAA | 6 cut(s) | 70, 165, 380, 432, 520, 694 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 2 cut(s) | 206, 436 |
| AluI | AGCT | 2 cut(s) | 206, 436 |
| Alw21I | GWGCWC | 2 cut(s) | 405, 583 |
| Alw26I | GTCTC | 2 cut(s) | 242, 529 |
| AlwI | GGATC | 1 cut(s) | 673 |
| AoxI | GGCC | 2 cut(s) | 103, 282 |
| ApoI | RAATTY | 3 cut(s) | 31, 64, 346 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 452, 484 |
| AspS9I | GGNCC | 4 cut(s) | 103, 112, 237, 734 |
| AsuHPI | GGTGA | 2 cut(s) | 287, 355 |
| AvaII | GGWCC | 3 cut(s) | 112, 237, 734 |
| BaeGI | GKGCMC | 1 cut(s) | 798 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 647, 680 |
| BanI | GGYRCC | 1 cut(s) | 451 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 512, 544 |
| Bbv12I | GWGCWC | 2 cut(s) | 405, 583 |
| BccI | CCATC | 3 cut(s) | 103, 217, 508 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BclI | TGATCA | 1 cut(s) | 615 |
| BcoDI | GTCTC | 2 cut(s) | 242, 529 |
| BfmI | CTRYAG | 1 cut(s) | 9 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| Bme18I | GGWCC | 3 cut(s) | 112, 237, 734 |
| BmgT120I | GGNCC | 4 cut(s) | 103, 112, 237, 734 |
| BmiI | GGNNCC | 2 cut(s) | 453, 735 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BmsI | GCATC | 1 cut(s) | 454 |
| Bpu10I | CCTNAGC | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 2 cut(s) | 356, 567 |
| BsaI | GGTCTC | 1 cut(s) | 529 |
| BsaJI | CCNNGG | 1 cut(s) | 100 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 252, 282 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 56, 121 |
| Bse1I | ACTGG | 1 cut(s) | 420 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseDI | CCNNGG | 1 cut(s) | 100 |
| BseGI | GGATG | 2 cut(s) | 219, 565 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 56, 121 |
| BseMII | CTCAG | 2 cut(s) | 119, 729 |
| BseNI | ACTGG | 1 cut(s) | 420 |
| BseRI | GAGGAG | 2 cut(s) | 712, 715 |
| BseSI | GKGCMC | 1 cut(s) | 798 |
| BshFI | GGCC | 2 cut(s) | 105, 284 |
| BshNI | GGYRCC | 1 cut(s) | 451 |
| BsiHKAI | GWGCWC | 2 cut(s) | 405, 583 |
| BslFI | GGGAC | 1 cut(s) | 747 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 56, 121 |
| BsmAI | GTCTC | 2 cut(s) | 242, 529 |
| BsmFI | GGGAC | 1 cut(s) | 747 |
| BsmI | GAATGC | 1 cut(s) | 721 |
| BsnI | GGCC | 2 cut(s) | 105, 284 |
| Bso31I | GGTCTC | 1 cut(s) | 529 |
| Bsp1286I | GDGCHC | 3 cut(s) | 405, 583, 798 |
| Bsp143I | GATC | 4 cut(s) | 562, 573, 615, 678 |
| BspACI | CCGC | 1 cut(s) | 708 |
| BspANI | GGCC | 2 cut(s) | 105, 284 |
| BspCNI | CTCAG | 2 cut(s) | 120, 730 |
| BspHI | TCATGA | 1 cut(s) | 228 |
| BspLI | GGNNCC | 2 cut(s) | 453, 735 |
| BspMAI | CTGCAG | 1 cut(s) | 13 |
| BspPI | GGATC | 1 cut(s) | 673 |
| BspQI | GCTCTTC | 1 cut(s) | 132 |
| BspT107I | GGYRCC | 1 cut(s) | 451 |
| BspTNI | GGTCTC | 1 cut(s) | 529 |
| BsrI | ACTGG | 1 cut(s) | 420 |
| BssECI | CCNNGG | 1 cut(s) | 100 |
| BssMI | GATC | 4 cut(s) | 562, 573, 615, 678 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 1 cut(s) | 253 |
| Bst6I | CTCTTC | 2 cut(s) | 43, 132 |
| BstDEI | CTNAG | 5 cut(s) | 128, 684, 729, 738, 747 |
| BstF5I | GGATG | 2 cut(s) | 219, 565 |
| BstKTI | GATC | 4 cut(s) | 565, 576, 618, 681 |
| BstMAI | GTCTC | 2 cut(s) | 242, 529 |
| BstMBI | GATC | 4 cut(s) | 562, 573, 615, 678 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 308, 716 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BstSFI | CTRYAG | 1 cut(s) | 9 |
| BstSLI | GKGCMC | 1 cut(s) | 798 |
| BstX2I | RGATCY | 1 cut(s) | 678 |
| BstYI | RGATCY | 1 cut(s) | 678 |
| BsuRI | GGCC | 2 cut(s) | 105, 284 |
| BtsCI | GGATG | 2 cut(s) | 219, 565 |
| BtsI | GCAGTG | 2 cut(s) | 18, 494 |
| BtsIMutI | CAGTG | 4 cut(s) | 18, 125, 153, 494 |
| CciI | TCATGA | 1 cut(s) | 228 |
| Cfr13I | GGNCC | 4 cut(s) | 103, 112, 237, 734 |
| CseI | GACGC | 1 cut(s) | 562 |
| Csp6I | GTAC | 1 cut(s) | 316 |
| CviAII | CATG | 9 cut(s) | 28, 188, 229, 241, 623, 634, 671, 712, 799 |
| CviQI | GTAC | 1 cut(s) | 316 |
| DdeI | CTNAG | 5 cut(s) | 128, 684, 729, 738, 747 |
| DpnI | GATC | 4 cut(s) | 564, 575, 617, 680 |
| DpnII | GATC | 4 cut(s) | 562, 573, 615, 678 |
| Eam1104I | CTCTTC | 2 cut(s) | 43, 132 |
| EarI | CTCTTC | 2 cut(s) | 43, 132 |
| Eco31I | GGTCTC | 1 cut(s) | 529 |
| Eco47I | GGWCC | 3 cut(s) | 112, 237, 734 |
| Eco57I | CTGAAG | 1 cut(s) | 6 |
| EcoO109I | RGGNCCY | 1 cut(s) | 734 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| FaeI | CATG | 9 cut(s) | 31, 191, 232, 244, 626, 637, 674, 715, 802 |
| FaqI | GGGAC | 1 cut(s) | 747 |
| FatI | CATG | 9 cut(s) | 27, 187, 228, 240, 622, 633, 670, 711, 798 |
| FauNDI | CATATG | 1 cut(s) | 480 |
| FbaI | TGATCA | 1 cut(s) | 615 |
| FokI | GGATG | 2 cut(s) | 226, 572 |
| HaeIII | GGCC | 2 cut(s) | 105, 284 |
| HgaI | GACGC | 1 cut(s) | 562 |
| Hin1II | CATG | 9 cut(s) | 31, 191, 232, 244, 626, 637, 674, 715, 802 |
| HincII | GTYRAC | 1 cut(s) | 628 |
| HindII | GTYRAC | 1 cut(s) | 628 |
| HinfI | GANTC | 1 cut(s) | 323 |
| HphI | GGTGA | 2 cut(s) | 287, 355 |
| Hpy166II | GTNNAC | 4 cut(s) | 16, 460, 628, 850 |
| Hpy188I | TCNGA | 1 cut(s) | 328 |
| Hpy188III | TCNNGA | 5 cut(s) | 70, 91, 229, 571, 584 |
| Hpy8I | GTNNAC | 4 cut(s) | 16, 460, 628, 850 |
| HpyAV | CCTTC | 1 cut(s) | 514 |
| HpyCH4III | ACNGT | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 637, 783 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 308, 716 |
| HpyF3I | CTNAG | 5 cut(s) | 128, 684, 729, 738, 747 |
| Hsp92II | CATG | 9 cut(s) | 31, 191, 232, 244, 626, 637, 674, 715, 802 |
| Ksp22I | TGATCA | 1 cut(s) | 615 |
| Kzo9I | GATC | 4 cut(s) | 562, 573, 615, 678 |
| LguI | GCTCTTC | 1 cut(s) | 132 |
| LweI | GCATC | 1 cut(s) | 454 |
| MaeIII | GTNAC | 1 cut(s) | 275 |
| MalI | GATC | 4 cut(s) | 564, 575, 617, 680 |
| MboI | GATC | 4 cut(s) | 562, 573, 615, 678 |
| MboII | GAAGA | 5 cut(s) | 30, 149, 392, 616, 814 |
| MfeI | CAATTG | 2 cut(s) | 303, 515 |
| MflI | RGATCY | 1 cut(s) | 678 |
| MhlI | GDGCHC | 3 cut(s) | 405, 583, 798 |
| MseI | TTAA | 5 cut(s) | 53, 411, 489, 600, 837 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MunI | CAATTG | 2 cut(s) | 303, 515 |
| Mva1269I | GAATGC | 1 cut(s) | 721 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 308, 716 |
| NdeI | CATATG | 1 cut(s) | 480 |
| NdeII | GATC | 4 cut(s) | 562, 573, 615, 678 |
| NlaIII | CATG | 9 cut(s) | 31, 191, 232, 244, 626, 637, 674, 715, 802 |
| NlaIV | GGNNCC | 2 cut(s) | 453, 735 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| PagI | TCATGA | 1 cut(s) | 228 |
| PciSI | GCTCTTC | 1 cut(s) | 132 |
| PctI | GAATGC | 1 cut(s) | 721 |
| PfeI | GAWTC | 1 cut(s) | 323 |
| PflFI | GACNNNGTC | 1 cut(s) | 764 |
| PpuMI | RGGWCCY | 1 cut(s) | 734 |
| Psp5II | RGGWCCY | 1 cut(s) | 734 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 2 cut(s) | 453, 735 |
| PspPI | GGNCC | 4 cut(s) | 103, 112, 237, 734 |
| PspPPI | RGGWCCY | 1 cut(s) | 734 |
| PstI | CTGCAG | 1 cut(s) | 13 |
| PsuI | RGATCY | 1 cut(s) | 678 |
| PsyI | GACNNNGTC | 1 cut(s) | 764 |
| RsaI | GTAC | 1 cut(s) | 317 |
| RsaNI | GTAC | 1 cut(s) | 316 |
| SapI | GCTCTTC | 1 cut(s) | 132 |
| SaqAI | TTAA | 5 cut(s) | 53, 411, 489, 600, 837 |
| Sau3AI | GATC | 4 cut(s) | 562, 573, 615, 678 |
| Sau96I | GGNCC | 4 cut(s) | 103, 112, 237, 734 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SduI | GDGCHC | 3 cut(s) | 405, 583, 798 |
| SetI | ASST | 7 cut(s) | 117, 208, 438, 453, 525, 661, 739 |
| SfaNI | GCATC | 1 cut(s) | 454 |
| SfcI | CTRYAG | 1 cut(s) | 9 |
| SinI | GGWCC | 3 cut(s) | 112, 237, 734 |
| SmlI | CTYRAG | 2 cut(s) | 371, 582 |
| SmoI | CTYRAG | 2 cut(s) | 371, 582 |
| SsiI | CCGC | 1 cut(s) | 708 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 1 cut(s) | 253 |
| TaqI | TCGA | 4 cut(s) | 41, 90, 117, 572 |
| TatI | WGTACW | 1 cut(s) | 315 |
| TfiI | GAWTC | 1 cut(s) | 323 |
| Tru1I | TTAA | 5 cut(s) | 53, 411, 489, 600, 837 |
| Tru9I | TTAA | 5 cut(s) | 53, 411, 489, 600, 837 |
| TscAI | CASTG | 4 cut(s) | 18, 132, 160, 501 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 6 cut(s) | 44, 245, 467, 622, 728, 815 |
| TspRI | CASTG | 4 cut(s) | 18, 132, 160, 501 |
| Tth111I | GACNNNGTC | 1 cut(s) | 764 |
| VpaK11BI | GGWCC | 3 cut(s) | 112, 237, 734 |
| XapI | RAATTY | 3 cut(s) | 31, 64, 346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 292 |