gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 61 - 194 | 1.1e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 84, 207 |
| AclWI | GGATC | 1 cut(s) | 144 |
| AcsI | RAATTY | 2 cut(s) | 57, 107 |
| AcuI | CTGAAG | 1 cut(s) | 491 |
| AgsI | TTSAA | 1 cut(s) | 179 |
| AluBI | AGCT | 8 cut(s) | 25, 169, 222, 292, 298, 353, 388, 433 |
| AluI | AGCT | 8 cut(s) | 25, 169, 222, 292, 298, 353, 388, 433 |
| Alw21I | GWGCWC | 1 cut(s) | 423 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 1 cut(s) | 144 |
| Ama87I | CYCGRG | 1 cut(s) | 448 |
| AoxI | GGCC | 1 cut(s) | 52 |
| ApeKI | GCWGC | 2 cut(s) | 222, 359 |
| ApoI | RAATTY | 2 cut(s) | 57, 107 |
| AspS9I | GGNCC | 1 cut(s) | 571 |
| AvaI | CYCGRG | 1 cut(s) | 448 |
| AvaII | GGWCC | 1 cut(s) | 571 |
| BanII | GRGCYC | 1 cut(s) | 281 |
| Bbv12I | GWGCWC | 1 cut(s) | 423 |
| BbvCI | CCTCAGC | 1 cut(s) | 354 |
| BbvI | GCAGC | 2 cut(s) | 209, 346 |
| BccI | CCATC | 1 cut(s) | 69 |
| BclI | TGATCA | 1 cut(s) | 42 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 3 cut(s) | 170, 314, 363 |
| BfmI | CTRYAG | 2 cut(s) | 48, 526 |
| BisI | GCNGC | 2 cut(s) | 223, 360 |
| BlsI | GCNGC | 2 cut(s) | 224, 361 |
| Bme18I | GGWCC | 1 cut(s) | 571 |
| BmeT110I | CYCGRG | 1 cut(s) | 448 |
| BmgT120I | GGNCC | 1 cut(s) | 571 |
| BmiI | GGNNCC | 1 cut(s) | 572 |
| BmrI | ACTGGG | 1 cut(s) | 577 |
| BmsI | GCATC | 1 cut(s) | 133 |
| BmuI | ACTGGG | 1 cut(s) | 577 |
| BpmI | CTGGAG | 1 cut(s) | 410 |
| Bpu10I | CCTNAGC | 1 cut(s) | 354 |
| BsaBI | GATNNNNATC | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 1 cut(s) | 303 |
| Bse1I | ACTGG | 1 cut(s) | 572 |
| Bse3DI | GCAATG | 1 cut(s) | 512 |
| Bse8I | GATNNNNATC | 1 cut(s) | 333 |
| BseDI | CCNNGG | 1 cut(s) | 303 |
| BseGI | GGATG | 1 cut(s) | 80 |
| BseJI | GATNNNNATC | 1 cut(s) | 333 |
| BseMI | GCAATG | 1 cut(s) | 512 |
| BseMII | CTCAG | 4 cut(s) | 141, 345, 500, 527 |
| BseNI | ACTGG | 1 cut(s) | 572 |
| BseXI | GCAGC | 2 cut(s) | 209, 346 |
| BshFI | GGCC | 1 cut(s) | 54 |
| BsiHKAI | GWGCWC | 1 cut(s) | 423 |
| BsiHKCI | CYCGRG | 1 cut(s) | 448 |
| BslFI | GGGAC | 1 cut(s) | 584 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmFI | GGGAC | 1 cut(s) | 584 |
| BsnI | GGCC | 1 cut(s) | 54 |
| BsoBI | CYCGRG | 1 cut(s) | 448 |
| Bsp1286I | GDGCHC | 2 cut(s) | 281, 423 |
| Bsp143I | GATC | 3 cut(s) | 42, 136, 435 |
| Bsp19I | CCATGG | 1 cut(s) | 303 |
| BspANI | GGCC | 1 cut(s) | 54 |
| BspCNI | CTCAG | 4 cut(s) | 142, 346, 499, 528 |
| BspLI | GGNNCC | 1 cut(s) | 572 |
| BspPI | GGATC | 1 cut(s) | 144 |
| BsrDI | GCAATG | 1 cut(s) | 512 |
| BsrI | ACTGG | 1 cut(s) | 572 |
| BssECI | CCNNGG | 1 cut(s) | 303 |
| BssMI | GATC | 3 cut(s) | 42, 136, 435 |
| BssT1I | CCWWGG | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 2 cut(s) | 271, 530 |
| BstC8I | GCNNGC | 1 cut(s) | 300 |
| BstDEI | CTNAG | 5 cut(s) | 150, 237, 354, 486, 536 |
| BstDSI | CCRYGG | 1 cut(s) | 303 |
| BstF5I | GGATG | 1 cut(s) | 80 |
| BstKTI | GATC | 3 cut(s) | 45, 139, 438 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 3 cut(s) | 42, 136, 435 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 31, 359 |
| BstNSI | RCATGY | 1 cut(s) | 500 |
| BstSFI | CTRYAG | 2 cut(s) | 48, 526 |
| BstV1I | GCAGC | 2 cut(s) | 209, 346 |
| BstX2I | RGATCY | 1 cut(s) | 136 |
| BstYI | RGATCY | 1 cut(s) | 136 |
| BsuRI | GGCC | 1 cut(s) | 54 |
| BtgI | CCRYGG | 1 cut(s) | 303 |
| BtsCI | GGATG | 1 cut(s) | 80 |
| BtsIMutI | CAGTG | 1 cut(s) | 267 |
| Cac8I | GCNNGC | 1 cut(s) | 300 |
| Cfr13I | GGNCC | 1 cut(s) | 571 |
| CviAII | CATG | 5 cut(s) | 133, 304, 469, 497, 551 |
| DdeI | CTNAG | 5 cut(s) | 150, 237, 354, 486, 536 |
| DpnI | GATC | 3 cut(s) | 44, 138, 437 |
| DpnII | GATC | 3 cut(s) | 42, 136, 435 |
| Eco130I | CCWWGG | 1 cut(s) | 303 |
| Eco24I | GRGCYC | 1 cut(s) | 281 |
| Eco47I | GGWCC | 1 cut(s) | 571 |
| Eco57I | CTGAAG | 1 cut(s) | 491 |
| Eco88I | CYCGRG | 1 cut(s) | 448 |
| EcoO109I | RGGNCCY | 1 cut(s) | 571 |
| EcoT14I | CCWWGG | 1 cut(s) | 303 |
| EcoT22I | ATGCAT | 1 cut(s) | 126 |
| EcoT38I | GRGCYC | 1 cut(s) | 281 |
| ErhI | CCWWGG | 1 cut(s) | 303 |
| FaeI | CATG | 5 cut(s) | 136, 307, 472, 500, 554 |
| FaqI | GGGAC | 1 cut(s) | 584 |
| FatI | CATG | 5 cut(s) | 132, 303, 468, 496, 550 |
| FbaI | TGATCA | 1 cut(s) | 42 |
| Fnu4HI | GCNGC | 2 cut(s) | 223, 360 |
| FokI | GGATG | 1 cut(s) | 87 |
| FriOI | GRGCYC | 1 cut(s) | 281 |
| Fsp4HI | GCNGC | 2 cut(s) | 223, 360 |
| FspBI | CTAG | 3 cut(s) | 170, 314, 363 |
| GluI | GCNGC | 2 cut(s) | 223, 360 |
| GsuI | CTGGAG | 1 cut(s) | 410 |
| HaeIII | GGCC | 1 cut(s) | 54 |
| Hin1II | CATG | 5 cut(s) | 136, 307, 472, 500, 554 |
| HindIII | AAGCTT | 1 cut(s) | 296 |
| HinfI | GANTC | 2 cut(s) | 482, 560 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy188III | TCNNGA | 2 cut(s) | 338, 399 |
| HpyAV | CCTTC | 1 cut(s) | 226 |
| HpyCH4III | ACNGT | 2 cut(s) | 271, 530 |
| HpyCH4V | TGCA | 3 cut(s) | 124, 225, 496 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 31, 359 |
| HpyF3I | CTNAG | 5 cut(s) | 150, 237, 354, 486, 536 |
| Hsp92II | CATG | 5 cut(s) | 136, 307, 472, 500, 554 |
| Ksp22I | TGATCA | 1 cut(s) | 42 |
| Kzo9I | GATC | 3 cut(s) | 42, 136, 435 |
| LmnI | GCTCC | 2 cut(s) | 418, 430 |
| LpnPI | CCDG | 8 cut(s) | 214, 323, 374, 384, 473, 548, 553, 587 |
| Lsp1109I | GCAGC | 2 cut(s) | 209, 346 |
| LweI | GCATC | 1 cut(s) | 133 |
| MaeI | CTAG | 3 cut(s) | 170, 314, 363 |
| MaeIII | GTNAC | 2 cut(s) | 344, 530 |
| MalI | GATC | 3 cut(s) | 44, 138, 437 |
| MboI | GATC | 3 cut(s) | 42, 136, 435 |
| MboII | GAAGA | 1 cut(s) | 203 |
| MflI | RGATCY | 1 cut(s) | 136 |
| MhlI | GDGCHC | 2 cut(s) | 281, 423 |
| MluCI | AATT | 5 cut(s) | 57, 79, 107, 282, 585 |
| MlyI | GAGTC | 1 cut(s) | 569 |
| MnlI | CCTC | 8 cut(s) | 145, 265, 267, 349, 408, 444, 452, 553 |
| Mph1103I | ATGCAT | 1 cut(s) | 126 |
| MseI | TTAA | 7 cut(s) | 9, 69, 105, 381, 455, 477, 584 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 31, 359 |
| NcoI | CCATGG | 1 cut(s) | 303 |
| NdeII | GATC | 3 cut(s) | 42, 136, 435 |
| NlaIII | CATG | 5 cut(s) | 136, 307, 472, 500, 554 |
| NlaIV | GGNNCC | 1 cut(s) | 572 |
| NmuCI | GTSAC | 1 cut(s) | 344 |
| NsiI | ATGCAT | 1 cut(s) | 126 |
| NspI | RCATGY | 1 cut(s) | 500 |
| PaeR7I | CTCGAG | 1 cut(s) | 448 |
| PfeI | GAWTC | 1 cut(s) | 482 |
| PkrI | GCNGC | 2 cut(s) | 224, 361 |
| PleI | GAGTC | 1 cut(s) | 568 |
| PpsI | GAGTC | 1 cut(s) | 568 |
| PpuMI | RGGWCCY | 1 cut(s) | 571 |
| PsiI | TTATAA | 2 cut(s) | 84, 207 |
| Psp5II | RGGWCCY | 1 cut(s) | 571 |
| PspN4I | GGNNCC | 1 cut(s) | 572 |
| PspPI | GGNCC | 1 cut(s) | 571 |
| PspPPI | RGGWCCY | 1 cut(s) | 571 |
| PspXI | VCTCGAGB | 1 cut(s) | 448 |
| PsuI | RGATCY | 1 cut(s) | 136 |
| SaqAI | TTAA | 7 cut(s) | 9, 69, 105, 381, 455, 477, 584 |
| SatI | GCNGC | 2 cut(s) | 223, 360 |
| Sau3AI | GATC | 3 cut(s) | 42, 136, 435 |
| Sau96I | GGNCC | 1 cut(s) | 571 |
| SchI | GAGTC | 1 cut(s) | 569 |
| SduI | GDGCHC | 2 cut(s) | 281, 423 |
| SfaNI | GCATC | 1 cut(s) | 133 |
| SfcI | CTRYAG | 2 cut(s) | 48, 526 |
| Sfr274I | CTCGAG | 1 cut(s) | 448 |
| SinI | GGWCC | 1 cut(s) | 571 |
| SlaI | CTCGAG | 1 cut(s) | 448 |
| SmlI | CTYRAG | 1 cut(s) | 448 |
| SmoI | CTYRAG | 1 cut(s) | 448 |
| Sse9I | AATT | 5 cut(s) | 57, 79, 107, 282, 585 |
| SspI | AATATT | 1 cut(s) | 203 |
| SspMI | CTAG | 3 cut(s) | 170, 314, 363 |
| StyI | CCWWGG | 1 cut(s) | 303 |
| TaaI | ACNGT | 2 cut(s) | 271, 530 |
| TaqI | TCGA | 2 cut(s) | 438, 449 |
| TasI | AATT | 5 cut(s) | 57, 79, 107, 282, 585 |
| TfiI | GAWTC | 1 cut(s) | 482 |
| Tru1I | TTAA | 7 cut(s) | 9, 69, 105, 381, 455, 477, 584 |
| Tru9I | TTAA | 7 cut(s) | 9, 69, 105, 381, 455, 477, 584 |
| TscAI | CASTG | 1 cut(s) | 274 |
| TseFI | GTSAC | 1 cut(s) | 344 |
| TseI | GCWGC | 2 cut(s) | 222, 359 |
| Tsp45I | GTSAC | 1 cut(s) | 344 |
| TspRI | CASTG | 1 cut(s) | 274 |
| VpaK11BI | GGWCC | 1 cut(s) | 571 |
| XapI | RAATTY | 2 cut(s) | 57, 107 |
| XceI | RCATGY | 1 cut(s) | 500 |
| XhoI | CTCGAG | 1 cut(s) | 448 |
| XspI | CTAG | 3 cut(s) | 170, 314, 363 |
| Zsp2I | ATGCAT | 1 cut(s) | 126 |