gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 7 - 122 | 9.8e-15 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 50, 370 |
| AfaI | GTAC | 1 cut(s) | 190 |
| AgsI | TTSAA | 5 cut(s) | 79, 199, 377, 451, 475 |
| AjnI | CCWGG | 1 cut(s) | 508 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 253, 285 |
| AluBI | AGCT | 1 cut(s) | 479 |
| AluI | AGCT | 1 cut(s) | 479 |
| Alw21I | GWGCWC | 1 cut(s) | 435 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 101 |
| ApoI | RAATTY | 2 cut(s) | 50, 370 |
| AsuHPI | GGTGA | 2 cut(s) | 397, 406 |
| BaeGI | GKGCMC | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 1 cut(s) | 435 |
| BciT130I | CCWGG | 1 cut(s) | 510 |
| BfaI | CTAG | 1 cut(s) | 179 |
| Bme1390I | CCNGG | 1 cut(s) | 510 |
| BmrFI | CCNGG | 1 cut(s) | 510 |
| BmsI | GCATC | 1 cut(s) | 68 |
| Bpu10I | CCTNAGC | 2 cut(s) | 45, 480 |
| BsaBI | GATNNNNATC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 1 cut(s) | 509 |
| Bse1I | ACTGG | 1 cut(s) | 106 |
| Bse8I | GATNNNNATC | 1 cut(s) | 332 |
| BseBI | CCWGG | 1 cut(s) | 510 |
| BseDI | CCNNGG | 1 cut(s) | 509 |
| BseGI | GGATG | 2 cut(s) | 59, 155 |
| BseJI | GATNNNNATC | 1 cut(s) | 332 |
| BseMII | CTCAG | 2 cut(s) | 21, 27 |
| BseNI | ACTGG | 1 cut(s) | 106 |
| BseRI | GAGGAG | 1 cut(s) | 362 |
| BseSI | GKGCMC | 1 cut(s) | 516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 435 |
| BslFI | GGGAC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 1 cut(s) | 197 |
| BsmI | GAATGC | 1 cut(s) | 205 |
| Bsp1286I | GDGCHC | 2 cut(s) | 435, 516 |
| Bsp143I | GATC | 1 cut(s) | 442 |
| BspCNI | CTCAG | 2 cut(s) | 22, 28 |
| BspHI | TCATGA | 1 cut(s) | 111 |
| BsrI | ACTGG | 1 cut(s) | 106 |
| BssECI | CCNNGG | 1 cut(s) | 509 |
| BssMI | GATC | 1 cut(s) | 442 |
| Bst2UI | CCWGG | 1 cut(s) | 510 |
| Bst4CI | ACNGT | 3 cut(s) | 13, 276, 557 |
| BstDEI | CTNAG | 5 cut(s) | 30, 36, 45, 232, 480 |
| BstF5I | GGATG | 2 cut(s) | 59, 155 |
| BstKTI | GATC | 1 cut(s) | 445 |
| BstMBI | GATC | 1 cut(s) | 442 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 349, 580 |
| BstNI | CCWGG | 1 cut(s) | 510 |
| BstSCI | CCNGG | 1 cut(s) | 508 |
| BstSLI | GKGCMC | 1 cut(s) | 516 |
| BtsCI | GGATG | 2 cut(s) | 59, 155 |
| BtsI | GCAGTG | 3 cut(s) | 254, 417, 526 |
| BtsIMutI | CAGTG | 4 cut(s) | 254, 417, 526, 562 |
| CaiI | CAGNNNCTG | 1 cut(s) | 101 |
| CciI | TCATGA | 1 cut(s) | 111 |
| Csp6I | GTAC | 1 cut(s) | 189 |
| CviAII | CATG | 4 cut(s) | 112, 239, 344, 517 |
| CviJI | RGCY | 2 cut(s) | 479, 574 |
| CviKI_1 | RGCY | 2 cut(s) | 479, 574 |
| CviQI | GTAC | 1 cut(s) | 189 |
| DdeI | CTNAG | 5 cut(s) | 30, 36, 45, 232, 480 |
| DpnI | GATC | 1 cut(s) | 444 |
| DpnII | GATC | 1 cut(s) | 442 |
| EcoRI | GAATTC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 508 |
| FaeI | CATG | 4 cut(s) | 115, 242, 347, 520 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 38, 70 |
| FaqI | GGGAC | 1 cut(s) | 197 |
| FatI | CATG | 4 cut(s) | 111, 238, 343, 516 |
| FokI | GGATG | 2 cut(s) | 46, 162 |
| FspBI | CTAG | 1 cut(s) | 179 |
| Hin1II | CATG | 4 cut(s) | 115, 242, 347, 520 |
| HinfI | GANTC | 3 cut(s) | 32, 83, 313 |
| HphI | GGTGA | 2 cut(s) | 397, 406 |
| Hpy188I | TCNGA | 3 cut(s) | 7, 37, 88 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 112 |
| HpyCH4III | ACNGT | 3 cut(s) | 13, 276, 557 |
| HpyCH4V | TGCA | 5 cut(s) | 296, 332, 343, 422, 501 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 349, 580 |
| HpyF3I | CTNAG | 5 cut(s) | 30, 36, 45, 232, 480 |
| Hsp92II | CATG | 4 cut(s) | 115, 242, 347, 520 |
| Kzo9I | GATC | 1 cut(s) | 442 |
| LmnI | GCTCC | 2 cut(s) | 349, 430 |
| LpnPI | CCDG | 7 cut(s) | 42, 87, 350, 413, 495, 522, 545 |
| LweI | GCATC | 1 cut(s) | 68 |
| MaeI | CTAG | 1 cut(s) | 179 |
| MaeIII | GTNAC | 2 cut(s) | 221, 394 |
| MalI | GATC | 1 cut(s) | 444 |
| MboI | GATC | 1 cut(s) | 442 |
| MhlI | GDGCHC | 2 cut(s) | 435, 516 |
| MluCI | AATT | 5 cut(s) | 50, 194, 250, 323, 370 |
| MlyI | GAGTC | 2 cut(s) | 41, 322 |
| MmeI | TCCRAC | 1 cut(s) | 30 |
| MnlI | CCTC | 2 cut(s) | 11, 340 |
| MseI | TTAA | 2 cut(s) | 249, 278 |
| MspR9I | CCNGG | 1 cut(s) | 510 |
| Mva1269I | GAATGC | 1 cut(s) | 205 |
| MvaI | CCWGG | 1 cut(s) | 510 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 349, 580 |
| NdeII | GATC | 1 cut(s) | 442 |
| NlaIII | CATG | 4 cut(s) | 115, 242, 347, 520 |
| NmuCI | GTSAC | 2 cut(s) | 221, 394 |
| PagI | TCATGA | 1 cut(s) | 111 |
| PctI | GAATGC | 1 cut(s) | 205 |
| PfeI | GAWTC | 1 cut(s) | 83 |
| PleI | GAGTC | 2 cut(s) | 40, 321 |
| PpsI | GAGTC | 2 cut(s) | 40, 321 |
| Psp6I | CCWGG | 1 cut(s) | 508 |
| PspGI | CCWGG | 1 cut(s) | 508 |
| PstNI | CAGNNNCTG | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 190 |
| RsaNI | GTAC | 1 cut(s) | 189 |
| SaqAI | TTAA | 2 cut(s) | 249, 278 |
| Sau3AI | GATC | 1 cut(s) | 442 |
| SchI | GAGTC | 2 cut(s) | 41, 322 |
| ScrFI | CCNGG | 1 cut(s) | 510 |
| SduI | GDGCHC | 2 cut(s) | 435, 516 |
| SetI | ASST | 3 cut(s) | 22, 481, 511 |
| SfaNI | GCATC | 1 cut(s) | 68 |
| Sse9I | AATT | 5 cut(s) | 50, 194, 250, 323, 370 |
| SspI | AATATT | 1 cut(s) | 269 |
| SspMI | CTAG | 1 cut(s) | 179 |
| StyD4I | CCNGG | 1 cut(s) | 508 |
| TaaI | ACNGT | 3 cut(s) | 13, 276, 557 |
| TasI | AATT | 5 cut(s) | 50, 194, 250, 323, 370 |
| TfiI | GAWTC | 1 cut(s) | 83 |
| Tru1I | TTAA | 2 cut(s) | 249, 278 |
| Tru9I | TTAA | 2 cut(s) | 249, 278 |
| TscAI | CASTG | 4 cut(s) | 261, 424, 533, 562 |
| TseFI | GTSAC | 2 cut(s) | 221, 394 |
| Tsp45I | GTSAC | 2 cut(s) | 221, 394 |
| TspDTI | ATGAA | 4 cut(s) | 128, 227, 336, 533 |
| TspRI | CASTG | 4 cut(s) | 261, 424, 533, 562 |
| XapI | RAATTY | 2 cut(s) | 50, 370 |
| XspI | CTAG | 1 cut(s) | 179 |