gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 228 |
| AclWI | GGATC | 2 cut(s) | 165, 183 |
| AcsI | RAATTY | 1 cut(s) | 128 |
| AfaI | GTAC | 3 cut(s) | 205, 277, 381 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 72 |
| AjnI | CCWGG | 2 cut(s) | 49, 120 |
| AluBI | AGCT | 2 cut(s) | 223, 319 |
| AluI | AGCT | 2 cut(s) | 223, 319 |
| Alw26I | GTCTC | 1 cut(s) | 281 |
| AlwI | GGATC | 2 cut(s) | 165, 183 |
| Ama87I | CYCGRG | 1 cut(s) | 314 |
| AoxI | GGCC | 1 cut(s) | 53 |
| ApeKI | GCWGC | 2 cut(s) | 26, 243 |
| ApoI | RAATTY | 1 cut(s) | 128 |
| AspA2I | CCTAGG | 1 cut(s) | 383 |
| AspS9I | GGNCC | 1 cut(s) | 53 |
| AsuNHI | GCTAGC | 1 cut(s) | 319 |
| AvaI | CYCGRG | 1 cut(s) | 314 |
| AvrII | CCTAGG | 1 cut(s) | 383 |
| AxyI | CCTNAGG | 1 cut(s) | 70 |
| BanII | GRGCYC | 1 cut(s) | 315 |
| BbvI | GCAGC | 2 cut(s) | 13, 255 |
| BciT130I | CCWGG | 2 cut(s) | 51, 122 |
| BcoDI | GTCTC | 1 cut(s) | 281 |
| BfaI | CTAG | 4 cut(s) | 191, 320, 384, 393 |
| BisI | GCNGC | 2 cut(s) | 27, 244 |
| BlnI | CCTAGG | 1 cut(s) | 383 |
| BlsI | GCNGC | 2 cut(s) | 28, 245 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 122 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 72 |
| BmeT110I | CYCGRG | 1 cut(s) | 314 |
| BmgT120I | GGNCC | 1 cut(s) | 53 |
| BmiI | GGNNCC | 1 cut(s) | 312 |
| BmrFI | CCNGG | 2 cut(s) | 51, 122 |
| BmtI | GCTAGC | 1 cut(s) | 323 |
| BpmI | CTGGAG | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 3 cut(s) | 50, 324, 383 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| Bse21I | CCTNAGG | 1 cut(s) | 70 |
| BseBI | CCWGG | 2 cut(s) | 51, 122 |
| BseDI | CCNNGG | 3 cut(s) | 50, 324, 383 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseXI | GCAGC | 2 cut(s) | 13, 255 |
| BseYI | CCCAGC | 1 cut(s) | 29 |
| BshFI | GGCC | 1 cut(s) | 55 |
| BsiHKCI | CYCGRG | 1 cut(s) | 314 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsmAI | GTCTC | 1 cut(s) | 281 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 1 cut(s) | 55 |
| BsoBI | CYCGRG | 1 cut(s) | 314 |
| Bsp1286I | GDGCHC | 1 cut(s) | 315 |
| Bsp143I | GATC | 2 cut(s) | 157, 175 |
| Bsp19I | CCATGG | 1 cut(s) | 324 |
| BspANI | GGCC | 1 cut(s) | 55 |
| BspLI | GGNNCC | 1 cut(s) | 312 |
| BspOI | GCTAGC | 1 cut(s) | 323 |
| BspPI | GGATC | 2 cut(s) | 165, 183 |
| BssECI | CCNNGG | 3 cut(s) | 50, 324, 383 |
| BssMI | GATC | 2 cut(s) | 157, 175 |
| BssT1I | CCWWGG | 2 cut(s) | 324, 383 |
| Bst2UI | CCWGG | 2 cut(s) | 51, 122 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 1 cut(s) | 70 |
| BstDSI | CCRYGG | 1 cut(s) | 324 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 170 |
| BstKTI | GATC | 2 cut(s) | 160, 178 |
| BstMAI | GTCTC | 1 cut(s) | 281 |
| BstMBI | GATC | 2 cut(s) | 157, 175 |
| BstNI | CCWGG | 2 cut(s) | 51, 122 |
| BstSCI | CCNGG | 2 cut(s) | 49, 120 |
| BstV1I | GCAGC | 2 cut(s) | 13, 255 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| Bsu36I | CCTNAGG | 1 cut(s) | 70 |
| BsuRI | GGCC | 1 cut(s) | 55 |
| BtgI | CCRYGG | 1 cut(s) | 324 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| Cfr13I | GGNCC | 1 cut(s) | 53 |
| CsiI | ACCWGGT | 1 cut(s) | 120 |
| Csp6I | GTAC | 3 cut(s) | 204, 276, 380 |
| CviAII | CATG | 4 cut(s) | 142, 154, 250, 325 |
| CviJI | RGCY | 9 cut(s) | 26, 55, 181, 223, 257, 313, 319, 323, 388 |
| CviKI_1 | RGCY | 9 cut(s) | 26, 55, 181, 223, 257, 313, 319, 323, 388 |
| CviQI | GTAC | 3 cut(s) | 204, 276, 380 |
| DdeI | CTNAG | 1 cut(s) | 70 |
| DpnI | GATC | 2 cut(s) | 159, 177 |
| DpnII | GATC | 2 cut(s) | 157, 175 |
| DriI | GACNNNNNGTC | 1 cut(s) | 72 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 72 |
| Eco130I | CCWWGG | 2 cut(s) | 324, 383 |
| Eco24I | GRGCYC | 1 cut(s) | 315 |
| Eco81I | CCTNAGG | 1 cut(s) | 70 |
| Eco88I | CYCGRG | 1 cut(s) | 314 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 170 |
| EcoO109I | RGGNCCY | 1 cut(s) | 53 |
| EcoRII | CCWGG | 2 cut(s) | 49, 120 |
| EcoT14I | CCWWGG | 2 cut(s) | 324, 383 |
| EcoT38I | GRGCYC | 1 cut(s) | 315 |
| ErhI | CCWWGG | 2 cut(s) | 324, 383 |
| FaeI | CATG | 4 cut(s) | 145, 157, 253, 328 |
| FatI | CATG | 4 cut(s) | 141, 153, 249, 324 |
| Fnu4HI | GCNGC | 2 cut(s) | 27, 244 |
| FriOI | GRGCYC | 1 cut(s) | 315 |
| Fsp4HI | GCNGC | 2 cut(s) | 27, 244 |
| FspBI | CTAG | 4 cut(s) | 191, 320, 384, 393 |
| GluI | GCNGC | 2 cut(s) | 27, 244 |
| GsaI | CCCAGC | 1 cut(s) | 33 |
| GsuI | CTGGAG | 1 cut(s) | 356 |
| HaeIII | GGCC | 1 cut(s) | 55 |
| Hin1II | CATG | 4 cut(s) | 145, 157, 253, 328 |
| HindIII | AAGCTT | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 286 |
| Hpy188III | TCNNGA | 1 cut(s) | 335 |
| HpyAV | CCTTC | 1 cut(s) | 192 |
| HpyF3I | CTNAG | 1 cut(s) | 70 |
| Hsp92II | CATG | 4 cut(s) | 145, 157, 253, 328 |
| Kzo9I | GATC | 2 cut(s) | 157, 175 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| LpnPI | CCDG | 8 cut(s) | 15, 36, 62, 63, 107, 134, 179, 320 |
| Lsp1109I | GCAGC | 2 cut(s) | 13, 255 |
| MabI | ACCWGGT | 1 cut(s) | 120 |
| MaeI | CTAG | 4 cut(s) | 191, 320, 384, 393 |
| MaeIII | GTNAC | 2 cut(s) | 64, 365 |
| MalI | GATC | 2 cut(s) | 159, 177 |
| MboI | GATC | 2 cut(s) | 157, 175 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MhlI | GDGCHC | 1 cut(s) | 315 |
| MluCI | AATT | 1 cut(s) | 128 |
| MnlI | CCTC | 5 cut(s) | 66, 156, 166, 205, 331 |
| MseI | TTAA | 4 cut(s) | 36, 90, 302, 402 |
| MspR9I | CCNGG | 2 cut(s) | 51, 122 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MvaI | CCWGG | 2 cut(s) | 51, 122 |
| NcoI | CCATGG | 1 cut(s) | 324 |
| NdeII | GATC | 2 cut(s) | 157, 175 |
| NheI | GCTAGC | 1 cut(s) | 319 |
| NlaIII | CATG | 4 cut(s) | 145, 157, 253, 328 |
| NlaIV | GGNNCC | 1 cut(s) | 312 |
| NmuCI | GTSAC | 2 cut(s) | 64, 365 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PkrI | GCNGC | 2 cut(s) | 28, 245 |
| PsiI | TTATAA | 1 cut(s) | 228 |
| Psp6I | CCWGG | 2 cut(s) | 49, 120 |
| PspFI | CCCAGC | 1 cut(s) | 29 |
| PspGI | CCWGG | 2 cut(s) | 49, 120 |
| PspN4I | GGNNCC | 1 cut(s) | 312 |
| PspPI | GGNCC | 1 cut(s) | 53 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RsaI | GTAC | 3 cut(s) | 205, 277, 381 |
| RsaNI | GTAC | 3 cut(s) | 204, 276, 380 |
| SaqAI | TTAA | 4 cut(s) | 36, 90, 302, 402 |
| SatI | GCNGC | 2 cut(s) | 27, 244 |
| Sau3AI | GATC | 2 cut(s) | 157, 175 |
| Sau96I | GGNCC | 1 cut(s) | 53 |
| ScrFI | CCNGG | 2 cut(s) | 51, 122 |
| SduI | GDGCHC | 1 cut(s) | 315 |
| SetI | ASST | 8 cut(s) | 71, 76, 81, 126, 225, 302, 321, 385 |
| SexAI | ACCWGGT | 1 cut(s) | 120 |
| Sse9I | AATT | 1 cut(s) | 128 |
| SspMI | CTAG | 4 cut(s) | 191, 320, 384, 393 |
| StyD4I | CCNGG | 2 cut(s) | 49, 120 |
| StyI | CCWWGG | 2 cut(s) | 324, 383 |
| TasI | AATT | 1 cut(s) | 128 |
| TatI | WGTACW | 1 cut(s) | 275 |
| Tru1I | TTAA | 4 cut(s) | 36, 90, 302, 402 |
| Tru9I | TTAA | 4 cut(s) | 36, 90, 302, 402 |
| TseFI | GTSAC | 2 cut(s) | 64, 365 |
| TseI | GCWGC | 2 cut(s) | 26, 243 |
| Tsp45I | GTSAC | 2 cut(s) | 64, 365 |
| TspDTI | ATGAA | 4 cut(s) | 17, 233, 266, 308 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 170 |
| XapI | RAATTY | 1 cut(s) | 128 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 331 |
| XmaJI | CCTAGG | 1 cut(s) | 383 |
| XspI | CTAG | 4 cut(s) | 191, 320, 384, 393 |