gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 29 - 161 | 8.2e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 154 |
| AclWI | GGATC | 1 cut(s) | 57 |
| AfaI | GTAC | 2 cut(s) | 63, 206 |
| AgsI | TTSAA | 1 cut(s) | 162 |
| AjnI | CCWGG | 1 cut(s) | 468 |
| AluBI | AGCT | 3 cut(s) | 257, 441, 478 |
| AluI | AGCT | 3 cut(s) | 257, 441, 478 |
| Alw21I | GWGCWC | 1 cut(s) | 480 |
| AlwI | GGATC | 1 cut(s) | 57 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 299 |
| AseI | ATTAAT | 1 cut(s) | 333 |
| AspS9I | GGNCC | 1 cut(s) | 117 |
| AvaII | GGWCC | 1 cut(s) | 117 |
| BanII | GRGCYC | 1 cut(s) | 480 |
| BbsI | GAAGAC | 1 cut(s) | 150 |
| Bbv12I | GWGCWC | 1 cut(s) | 480 |
| BccI | CCATC | 4 cut(s) | 121, 149, 358, 435 |
| BciT130I | CCWGG | 1 cut(s) | 470 |
| BfaI | CTAG | 2 cut(s) | 209, 258 |
| BfmI | CTRYAG | 1 cut(s) | 69 |
| Bme1390I | CCNGG | 1 cut(s) | 470 |
| Bme18I | GGWCC | 1 cut(s) | 117 |
| BmgT120I | GGNCC | 1 cut(s) | 117 |
| BmiI | GGNNCC | 2 cut(s) | 186, 467 |
| BmrFI | CCNGG | 1 cut(s) | 470 |
| BmsI | GCATC | 1 cut(s) | 400 |
| BpiI | GAAGAC | 1 cut(s) | 150 |
| BpmI | CTGGAG | 1 cut(s) | 321 |
| BsaBI | GATNNNNATC | 1 cut(s) | 335 |
| Bse1I | ACTGG | 2 cut(s) | 405, 417 |
| Bse8I | GATNNNNATC | 1 cut(s) | 335 |
| BseBI | CCWGG | 1 cut(s) | 470 |
| BseGI | GGATG | 3 cut(s) | 117, 382, 478 |
| BseJI | GATNNNNATC | 1 cut(s) | 335 |
| BseMII | CTCAG | 3 cut(s) | 192, 240, 464 |
| BseNI | ACTGG | 2 cut(s) | 405, 417 |
| BsiHKAI | GWGCWC | 1 cut(s) | 480 |
| Bsp1286I | GDGCHC | 1 cut(s) | 480 |
| Bsp143I | GATC | 1 cut(s) | 49 |
| BspCNI | CTCAG | 3 cut(s) | 193, 241, 463 |
| BspLI | GGNNCC | 2 cut(s) | 186, 467 |
| BspPI | GGATC | 1 cut(s) | 57 |
| BsrI | ACTGG | 2 cut(s) | 405, 417 |
| BssMI | GATC | 1 cut(s) | 49 |
| Bst2UI | CCWGG | 1 cut(s) | 470 |
| Bst6I | CTCTTC | 1 cut(s) | 414 |
| BstDEI | CTNAG | 5 cut(s) | 201, 249, 350, 431, 450 |
| BstF5I | GGATG | 3 cut(s) | 117, 382, 478 |
| BstKTI | GATC | 1 cut(s) | 52 |
| BstMBI | GATC | 1 cut(s) | 49 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 254 |
| BstNI | CCWGG | 1 cut(s) | 470 |
| BstSCI | CCNGG | 1 cut(s) | 468 |
| BstSFI | CTRYAG | 1 cut(s) | 69 |
| BstV2I | GAAGAC | 1 cut(s) | 150 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 127 |
| BtsCI | GGATG | 3 cut(s) | 117, 382, 478 |
| BtsIMutI | CAGTG | 1 cut(s) | 398 |
| CaiI | CAGNNNCTG | 1 cut(s) | 299 |
| Cfr13I | GGNCC | 1 cut(s) | 117 |
| Csp6I | GTAC | 2 cut(s) | 62, 205 |
| CviAII | CATG | 3 cut(s) | 20, 395, 481 |
| CviQI | GTAC | 2 cut(s) | 62, 205 |
| DdeI | CTNAG | 5 cut(s) | 201, 249, 350, 431, 450 |
| DpnI | GATC | 1 cut(s) | 51 |
| DpnII | GATC | 1 cut(s) | 49 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 154 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 154 |
| Eam1104I | CTCTTC | 1 cut(s) | 414 |
| EarI | CTCTTC | 1 cut(s) | 414 |
| Ecl136II | GAGCTC | 1 cut(s) | 478 |
| Eco24I | GRGCYC | 1 cut(s) | 480 |
| Eco47I | GGWCC | 1 cut(s) | 117 |
| Eco53kI | GAGCTC | 1 cut(s) | 478 |
| EcoICRI | GAGCTC | 1 cut(s) | 478 |
| EcoRII | CCWGG | 1 cut(s) | 468 |
| EcoT22I | ATGCAT | 1 cut(s) | 21 |
| EcoT38I | GRGCYC | 1 cut(s) | 480 |
| FaeI | CATG | 3 cut(s) | 23, 398, 484 |
| FatI | CATG | 3 cut(s) | 19, 394, 480 |
| FokI | GGATG | 3 cut(s) | 124, 389, 485 |
| FriOI | GRGCYC | 1 cut(s) | 480 |
| FspBI | CTAG | 2 cut(s) | 209, 258 |
| GsuI | CTGGAG | 1 cut(s) | 321 |
| Hin1II | CATG | 3 cut(s) | 23, 398, 484 |
| HinfI | GANTC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 1 cut(s) | 453 |
| Hpy188III | TCNNGA | 2 cut(s) | 145, 300 |
| HpyAV | CCTTC | 1 cut(s) | 238 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 391, 398 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 254 |
| HpyF3I | CTNAG | 5 cut(s) | 201, 249, 350, 431, 450 |
| Hsp92II | CATG | 3 cut(s) | 23, 398, 484 |
| Kzo9I | GATC | 1 cut(s) | 49 |
| LmnI | GCTCC | 2 cut(s) | 313, 465 |
| LpnPI | CCDG | 7 cut(s) | 201, 279, 285, 386, 430, 455, 482 |
| LweI | GCATC | 1 cut(s) | 400 |
| MaeI | CTAG | 2 cut(s) | 209, 258 |
| MalI | GATC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 49 |
| MboII | GAAGA | 2 cut(s) | 150, 401 |
| MhlI | GDGCHC | 1 cut(s) | 480 |
| MluCI | AATT | 3 cut(s) | 191, 380, 460 |
| MmeI | TCCRAC | 2 cut(s) | 144, 437 |
| MnlI | CCTC | 6 cut(s) | 108, 160, 175, 205, 219, 296 |
| Mph1103I | ATGCAT | 1 cut(s) | 21 |
| MseI | TTAA | 3 cut(s) | 90, 230, 333 |
| MslI | CAYNNNNRTG | 1 cut(s) | 14 |
| MspR9I | CCNGG | 1 cut(s) | 470 |
| MvaI | CCWGG | 1 cut(s) | 470 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 254 |
| NdeII | GATC | 1 cut(s) | 49 |
| NlaIII | CATG | 3 cut(s) | 23, 398, 484 |
| NlaIV | GGNNCC | 2 cut(s) | 186, 467 |
| NsiI | ATGCAT | 1 cut(s) | 21 |
| PfeI | GAWTC | 1 cut(s) | 404 |
| PshBI | ATTAAT | 1 cut(s) | 333 |
| Psp124BI | GAGCTC | 1 cut(s) | 480 |
| Psp6I | CCWGG | 1 cut(s) | 468 |
| PspGI | CCWGG | 1 cut(s) | 468 |
| PspN4I | GGNNCC | 2 cut(s) | 186, 467 |
| PspPI | GGNCC | 1 cut(s) | 117 |
| PstNI | CAGNNNCTG | 1 cut(s) | 299 |
| RsaI | GTAC | 2 cut(s) | 63, 206 |
| RsaNI | GTAC | 2 cut(s) | 62, 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 14 |
| SacI | GAGCTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 3 cut(s) | 90, 230, 333 |
| Sau3AI | GATC | 1 cut(s) | 49 |
| Sau96I | GGNCC | 1 cut(s) | 117 |
| ScrFI | CCNGG | 1 cut(s) | 470 |
| SduI | GDGCHC | 1 cut(s) | 480 |
| SetI | ASST | 8 cut(s) | 119, 152, 210, 230, 259, 307, 443, 480 |
| SfaNI | GCATC | 1 cut(s) | 400 |
| SfcI | CTRYAG | 1 cut(s) | 69 |
| SinI | GGWCC | 1 cut(s) | 117 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 14 |
| Sse9I | AATT | 3 cut(s) | 191, 380, 460 |
| SspMI | CTAG | 2 cut(s) | 209, 258 |
| SstI | GAGCTC | 1 cut(s) | 480 |
| StyD4I | CCNGG | 1 cut(s) | 468 |
| TasI | AATT | 3 cut(s) | 191, 380, 460 |
| TatI | WGTACW | 1 cut(s) | 61 |
| TfiI | GAWTC | 1 cut(s) | 404 |
| Tru1I | TTAA | 3 cut(s) | 90, 230, 333 |
| Tru9I | TTAA | 3 cut(s) | 90, 230, 333 |
| TscAI | CASTG | 1 cut(s) | 405 |
| TspDTI | ATGAA | 5 cut(s) | 17, 31, 36, 338, 393 |
| TspRI | CASTG | 1 cut(s) | 405 |
| VpaK11BI | GGWCC | 1 cut(s) | 117 |
| VspI | ATTAAT | 1 cut(s) | 333 |
| XspI | CTAG | 2 cut(s) | 209, 258 |
| Zsp2I | ATGCAT | 1 cut(s) | 21 |