Belongs to the GRAS family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 33 - 179 | 7.8e-18 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 692 |
| AclWI | GGATC | 1 cut(s) | 536 |
| AcoI | YGGCCR | 1 cut(s) | 693 |
| AcsI | RAATTY | 1 cut(s) | 437 |
| AcuI | CTGAAG | 1 cut(s) | 362 |
| AfaI | GTAC | 1 cut(s) | 224 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 11 |
| AflII | CTTAAG | 1 cut(s) | 449 |
| AgsI | TTSAA | 3 cut(s) | 10, 437, 490 |
| AjnI | CCWGG | 2 cut(s) | 29, 609 |
| Alw26I | GTCTC | 1 cut(s) | 263 |
| AlwI | GGATC | 1 cut(s) | 536 |
| AoxI | GGCC | 2 cut(s) | 627, 693 |
| ApeKI | GCWGC | 2 cut(s) | 113, 292 |
| ApoI | RAATTY | 1 cut(s) | 437 |
| AspS9I | GGNCC | 1 cut(s) | 27 |
| AsuHPI | GGTGA | 3 cut(s) | 142, 539, 547 |
| AvaII | GGWCC | 1 cut(s) | 27 |
| BauI | CACGAG | 1 cut(s) | 521 |
| BbsI | GAAGAC | 1 cut(s) | 402 |
| BbvI | GCAGC | 2 cut(s) | 125, 279 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 482, 516 |
| BciT130I | CCWGG | 2 cut(s) | 31, 611 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcoDI | GTCTC | 1 cut(s) | 263 |
| BfaI | CTAG | 4 cut(s) | 56, 117, 216, 413 |
| BfmI | CTRYAG | 1 cut(s) | 22 |
| BfrI | CTTAAG | 1 cut(s) | 449 |
| BglII | AGATCT | 1 cut(s) | 144 |
| BisI | GCNGC | 3 cut(s) | 114, 293, 693 |
| BlpI | GCTNAGC | 1 cut(s) | 363 |
| BlsI | GCNGC | 3 cut(s) | 115, 294, 694 |
| Bme1390I | CCNGG | 2 cut(s) | 31, 611 |
| Bme18I | GGWCC | 1 cut(s) | 27 |
| BmgT120I | GGNCC | 1 cut(s) | 27 |
| BmrFI | CCNGG | 2 cut(s) | 31, 611 |
| BmrI | ACTGGG | 1 cut(s) | 136 |
| BmsI | GCATC | 1 cut(s) | 666 |
| BmuI | ACTGGG | 1 cut(s) | 136 |
| BpiI | GAAGAC | 1 cut(s) | 402 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 351, 383 |
| BpmI | CTGGAG | 1 cut(s) | 52 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 363 |
| BsaBI | GATNNNNATC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 3 cut(s) | 387, 610, 696 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 11 |
| Bse1I | ACTGG | 1 cut(s) | 131 |
| Bse8I | GATNNNNATC | 1 cut(s) | 323 |
| BseBI | CCWGG | 2 cut(s) | 31, 611 |
| BseDI | CCNNGG | 3 cut(s) | 387, 610, 696 |
| BseJI | GATNNNNATC | 1 cut(s) | 323 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BseMII | CTCAG | 6 cut(s) | 74, 155, 192, 231, 258, 573 |
| BseNI | ACTGG | 1 cut(s) | 131 |
| BseXI | GCAGC | 2 cut(s) | 125, 279 |
| BseYI | CCCAGC | 1 cut(s) | 593 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| BshFI | GGCC | 2 cut(s) | 629, 695 |
| BslFI | GGGAC | 1 cut(s) | 74 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BsmAI | GTCTC | 1 cut(s) | 263 |
| BsmFI | GGGAC | 1 cut(s) | 74 |
| BsnI | GGCC | 2 cut(s) | 629, 695 |
| Bsp143I | GATC | 3 cut(s) | 144, 442, 528 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 363 |
| Bsp19I | CCATGG | 1 cut(s) | 387 |
| BspACI | CCGC | 1 cut(s) | 692 |
| BspANI | GGCC | 2 cut(s) | 629, 695 |
| BspCNI | CTCAG | 6 cut(s) | 75, 156, 193, 232, 259, 574 |
| BspPI | GGATC | 1 cut(s) | 536 |
| BspTI | CTTAAG | 1 cut(s) | 449 |
| BsrI | ACTGG | 1 cut(s) | 131 |
| BssECI | CCNNGG | 3 cut(s) | 387, 610, 696 |
| BssMI | GATC | 3 cut(s) | 144, 442, 528 |
| BssSI | CACGAG | 1 cut(s) | 521 |
| BssT1I | CCWWGG | 2 cut(s) | 387, 696 |
| Bst2BI | CACGAG | 1 cut(s) | 521 |
| Bst2UI | CCWGG | 2 cut(s) | 31, 611 |
| Bst4CI | ACNGT | 1 cut(s) | 570 |
| BstAFI | CTTAAG | 1 cut(s) | 449 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 663 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstDEI | CTNAG | 8 cut(s) | 83, 164, 201, 240, 267, 363, 582, 603 |
| BstDSI | CCRYGG | 1 cut(s) | 387 |
| BstKTI | GATC | 3 cut(s) | 147, 445, 531 |
| BstMAI | GTCTC | 1 cut(s) | 263 |
| BstMBI | GATC | 3 cut(s) | 144, 442, 528 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 272, 663 |
| BstNI | CCWGG | 2 cut(s) | 31, 611 |
| BstSCI | CCNGG | 2 cut(s) | 29, 609 |
| BstSFI | CTRYAG | 1 cut(s) | 22 |
| BstV1I | GCAGC | 2 cut(s) | 125, 279 |
| BstV2I | GAAGAC | 1 cut(s) | 402 |
| BstX2I | RGATCY | 1 cut(s) | 144 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 296 |
| BstYI | RGATCY | 1 cut(s) | 144 |
| BsuRI | GGCC | 2 cut(s) | 629, 695 |
| BtgI | CCRYGG | 1 cut(s) | 387 |
| BtsI | GCAGTG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 3 cut(s) | 369, 575, 646 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 27 |
| Csp6I | GTAC | 1 cut(s) | 223 |
| CviAII | CATG | 4 cut(s) | 296, 388, 400, 631 |
| CviQI | GTAC | 1 cut(s) | 223 |
| DdeI | CTNAG | 8 cut(s) | 83, 164, 201, 240, 267, 363, 582, 603 |
| DpnI | GATC | 3 cut(s) | 146, 444, 530 |
| DpnII | GATC | 3 cut(s) | 144, 442, 528 |
| EaeI | YGGCCR | 1 cut(s) | 693 |
| Eco130I | CCWWGG | 2 cut(s) | 387, 696 |
| Eco47I | GGWCC | 1 cut(s) | 27 |
| Eco57I | CTGAAG | 1 cut(s) | 362 |
| EcoO109I | RGGNCCY | 1 cut(s) | 27 |
| EcoRII | CCWGG | 2 cut(s) | 29, 609 |
| EcoT14I | CCWWGG | 2 cut(s) | 387, 696 |
| ErhI | CCWWGG | 2 cut(s) | 387, 696 |
| FaeI | CATG | 4 cut(s) | 299, 391, 403, 634 |
| FaqI | GGGAC | 1 cut(s) | 74 |
| FatI | CATG | 4 cut(s) | 295, 387, 399, 630 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 3 cut(s) | 114, 293, 693 |
| Fsp4HI | GCNGC | 3 cut(s) | 114, 293, 693 |
| FspBI | CTAG | 4 cut(s) | 56, 117, 216, 413 |
| GluI | GCNGC | 3 cut(s) | 114, 293, 693 |
| GsaI | CCCAGC | 1 cut(s) | 597 |
| GsuI | CTGGAG | 1 cut(s) | 52 |
| HaeIII | GGCC | 2 cut(s) | 629, 695 |
| Hin1II | CATG | 4 cut(s) | 299, 391, 403, 634 |
| HphI | GGTGA | 3 cut(s) | 142, 539, 547 |
| Hpy166II | GTNNAC | 1 cut(s) | 249 |
| Hpy188I | TCNGA | 5 cut(s) | 84, 165, 178, 342, 420 |
| Hpy188III | TCNNGA | 3 cut(s) | 200, 250, 532 |
| Hpy8I | GTNNAC | 1 cut(s) | 249 |
| HpyAV | CCTTC | 1 cut(s) | 619 |
| HpyCH4III | ACNGT | 1 cut(s) | 570 |
| HpyCH4V | TGCA | 2 cut(s) | 113, 295 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 272, 663 |
| HpyF3I | CTNAG | 8 cut(s) | 83, 164, 201, 240, 267, 363, 582, 603 |
| Hsp92II | CATG | 4 cut(s) | 299, 391, 403, 634 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 3 cut(s) | 144, 442, 528 |
| LmnI | GCTCC | 1 cut(s) | 359 |
| Lsp1109I | GCAGC | 2 cut(s) | 125, 279 |
| LweI | GCATC | 1 cut(s) | 666 |
| MaeI | CTAG | 4 cut(s) | 56, 117, 216, 413 |
| MaeIII | GTNAC | 2 cut(s) | 257, 538 |
| MalI | GATC | 3 cut(s) | 146, 444, 530 |
| MboI | GATC | 3 cut(s) | 144, 442, 528 |
| MboII | GAAGA | 5 cut(s) | 328, 355, 407, 586, 598 |
| MflI | RGATCY | 1 cut(s) | 144 |
| MluCI | AATT | 2 cut(s) | 437, 498 |
| MnlI | CCTC | 9 cut(s) | 159, 237, 385, 386, 437, 519, 610, 647, 682 |
| MseI | TTAA | 1 cut(s) | 450 |
| MspA1I | CMGCKG | 1 cut(s) | 292 |
| MspCI | CTTAAG | 1 cut(s) | 449 |
| MspR9I | CCNGG | 2 cut(s) | 31, 611 |
| MvaI | CCWGG | 2 cut(s) | 31, 611 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 272, 663 |
| NcoI | CCATGG | 1 cut(s) | 387 |
| NdeII | GATC | 3 cut(s) | 144, 442, 528 |
| NlaIII | CATG | 4 cut(s) | 299, 391, 403, 634 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| PflFI | GACNNNGTC | 1 cut(s) | 172 |
| PkrI | GCNGC | 3 cut(s) | 115, 294, 694 |
| PpuMI | RGGWCCY | 1 cut(s) | 27 |
| Psp5II | RGGWCCY | 1 cut(s) | 27 |
| Psp6I | CCWGG | 2 cut(s) | 29, 609 |
| PspFI | CCCAGC | 1 cut(s) | 593 |
| PspGI | CCWGG | 2 cut(s) | 29, 609 |
| PspPI | GGNCC | 1 cut(s) | 27 |
| PspPPI | RGGWCCY | 1 cut(s) | 27 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 399, 431 |
| PsuI | RGATCY | 1 cut(s) | 144 |
| PsyI | GACNNNGTC | 1 cut(s) | 172 |
| PvuII | CAGCTG | 1 cut(s) | 292 |
| RsaI | GTAC | 1 cut(s) | 224 |
| RsaNI | GTAC | 1 cut(s) | 223 |
| SaqAI | TTAA | 1 cut(s) | 450 |
| SatI | GCNGC | 3 cut(s) | 114, 293, 693 |
| Sau3AI | GATC | 3 cut(s) | 144, 442, 528 |
| Sau96I | GGNCC | 1 cut(s) | 27 |
| ScrFI | CCNGG | 2 cut(s) | 31, 611 |
| SfaNI | GCATC | 1 cut(s) | 666 |
| SfcI | CTRYAG | 1 cut(s) | 22 |
| SinI | GGWCC | 1 cut(s) | 27 |
| SmlI | CTYRAG | 1 cut(s) | 449 |
| SmoI | CTYRAG | 1 cut(s) | 449 |
| Sse9I | AATT | 2 cut(s) | 437, 498 |
| SsiI | CCGC | 1 cut(s) | 692 |
| SspMI | CTAG | 4 cut(s) | 56, 117, 216, 413 |
| StyD4I | CCNGG | 2 cut(s) | 29, 609 |
| StyI | CCWWGG | 2 cut(s) | 387, 696 |
| TaaI | ACNGT | 1 cut(s) | 570 |
| TasI | AATT | 2 cut(s) | 437, 498 |
| TauI | GCSGC | 1 cut(s) | 695 |
| Tru1I | TTAA | 1 cut(s) | 450 |
| Tru9I | TTAA | 1 cut(s) | 450 |
| TscAI | CASTG | 3 cut(s) | 376, 575, 646 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| TseI | GCWGC | 2 cut(s) | 113, 292 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspDTI | ATGAA | 4 cut(s) | 317, 329, 335, 647 |
| TspRI | CASTG | 3 cut(s) | 376, 575, 646 |
| Tth111I | GACNNNGTC | 1 cut(s) | 172 |
| Vha464I | CTTAAG | 1 cut(s) | 449 |
| VpaK11BI | GGWCC | 1 cut(s) | 27 |
| XapI | RAATTY | 1 cut(s) | 437 |
| XspI | CTAG | 4 cut(s) | 56, 117, 216, 413 |