gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 195, 261 |
| AccB1I | GGYRCC | 2 cut(s) | 195, 261 |
| AccIII | TCCGGA | 1 cut(s) | 443 |
| AciI | CCGC | 1 cut(s) | 146 |
| AclWI | GGATC | 2 cut(s) | 50, 525 |
| AcoI | YGGCCR | 1 cut(s) | 133 |
| AcsI | RAATTY | 3 cut(s) | 209, 275, 713 |
| AcuI | CTGAAG | 2 cut(s) | 576, 756 |
| AcvI | CACGTG | 1 cut(s) | 131 |
| AfaI | GTAC | 5 cut(s) | 197, 263, 565, 776, 784 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 361 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AluBI | AGCT | 5 cut(s) | 80, 470, 593, 734, 740 |
| AluI | AGCT | 5 cut(s) | 80, 470, 593, 734, 740 |
| Alw26I | GTCTC | 1 cut(s) | 366 |
| AlwI | GGATC | 2 cut(s) | 50, 525 |
| Ama87I | CYCGRG | 1 cut(s) | 75 |
| Aor13HI | TCCGGA | 1 cut(s) | 443 |
| AoxI | GGCC | 3 cut(s) | 10, 133, 292 |
| ApeKI | GCWGC | 1 cut(s) | 740 |
| ApoI | RAATTY | 3 cut(s) | 209, 275, 713 |
| Asp718I | GGTACC | 2 cut(s) | 195, 261 |
| AspS9I | GGNCC | 2 cut(s) | 10, 292 |
| AvaI | CYCGRG | 1 cut(s) | 75 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 766 |
| BanI | GGYRCC | 2 cut(s) | 195, 261 |
| BbrPI | CACGTG | 1 cut(s) | 131 |
| BbvI | GCAGC | 1 cut(s) | 727 |
| BccI | CCATC | 4 cut(s) | 163, 229, 295, 313 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BcoDI | GTCTC | 1 cut(s) | 366 |
| BfmI | CTRYAG | 1 cut(s) | 567 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BisI | GCNGC | 1 cut(s) | 741 |
| BlsI | GCNGC | 1 cut(s) | 742 |
| BmcAI | AGTACT | 1 cut(s) | 565 |
| BmeT110I | CYCGRG | 1 cut(s) | 75 |
| BmgT120I | GGNCC | 2 cut(s) | 10, 292 |
| BmiI | GGNNCC | 3 cut(s) | 197, 263, 672 |
| BmrI | ACTGGG | 2 cut(s) | 112, 795 |
| BmsI | GCATC | 2 cut(s) | 13, 492 |
| BmuI | ACTGGG | 2 cut(s) | 112, 795 |
| BsaAI | YACGTR | 1 cut(s) | 131 |
| BsaWI | WCCGGW | 4 cut(s) | 198, 264, 443, 673 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 361 |
| Bse1I | ACTGG | 2 cut(s) | 118, 790 |
| BseAI | TCCGGA | 1 cut(s) | 443 |
| BseGI | GGATG | 1 cut(s) | 618 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 361 |
| BseNI | ACTGG | 2 cut(s) | 118, 790 |
| BseXI | GCAGC | 1 cut(s) | 727 |
| BshFI | GGCC | 3 cut(s) | 12, 135, 294 |
| BshNI | GGYRCC | 2 cut(s) | 195, 261 |
| BsiHKCI | CYCGRG | 1 cut(s) | 75 |
| BsiSI | CCGG | 4 cut(s) | 199, 265, 444, 674 |
| BslFI | GGGAC | 2 cut(s) | 41, 337 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 361 |
| BsmAI | GTCTC | 1 cut(s) | 366 |
| BsmFI | GGGAC | 2 cut(s) | 41, 337 |
| BsmI | GAATGC | 1 cut(s) | 426 |
| BsnI | GGCC | 3 cut(s) | 12, 135, 294 |
| BsoBI | CYCGRG | 1 cut(s) | 75 |
| Bsp13I | TCCGGA | 1 cut(s) | 443 |
| Bsp143I | GATC | 3 cut(s) | 42, 517, 766 |
| BspACI | CCGC | 1 cut(s) | 146 |
| BspANI | GGCC | 3 cut(s) | 12, 135, 294 |
| BspEI | TCCGGA | 1 cut(s) | 443 |
| BspLI | GGNNCC | 3 cut(s) | 197, 263, 672 |
| BspMAI | CTGCAG | 1 cut(s) | 571 |
| BspPI | GGATC | 2 cut(s) | 50, 525 |
| BspT107I | GGYRCC | 2 cut(s) | 195, 261 |
| BsrI | ACTGG | 2 cut(s) | 118, 790 |
| BssMI | GATC | 3 cut(s) | 42, 517, 766 |
| Bst4CI | ACNGT | 2 cut(s) | 652, 750 |
| Bst6I | CTCTTC | 1 cut(s) | 470 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 108 |
| BstBAI | YACGTR | 1 cut(s) | 131 |
| BstC8I | GCNNGC | 1 cut(s) | 296 |
| BstDEI | CTNAG | 1 cut(s) | 770 |
| BstF5I | GGATG | 1 cut(s) | 618 |
| BstKTI | GATC | 3 cut(s) | 45, 520, 769 |
| BstMAI | GTCTC | 1 cut(s) | 366 |
| BstMBI | GATC | 3 cut(s) | 42, 517, 766 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 108, 300, 740 |
| BstNSI | RCATGY | 2 cut(s) | 143, 350 |
| BstSFI | CTRYAG | 1 cut(s) | 567 |
| BstV1I | GCAGC | 1 cut(s) | 727 |
| BstX2I | RGATCY | 1 cut(s) | 517 |
| BstYI | RGATCY | 1 cut(s) | 517 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuRI | GGCC | 3 cut(s) | 12, 135, 294 |
| BtsCI | GGATG | 1 cut(s) | 618 |
| BtsIMutI | CAGTG | 2 cut(s) | 528, 684 |
| Cac8I | GCNNGC | 1 cut(s) | 296 |
| Cfr13I | GGNCC | 2 cut(s) | 10, 292 |
| Csp6I | GTAC | 5 cut(s) | 196, 262, 564, 775, 783 |
| CviAII | CATG | 4 cut(s) | 140, 347, 506, 764 |
| CviQI | GTAC | 5 cut(s) | 196, 262, 564, 775, 783 |
| DdeI | CTNAG | 1 cut(s) | 770 |
| DpnI | GATC | 3 cut(s) | 44, 519, 768 |
| DpnII | GATC | 3 cut(s) | 42, 517, 766 |
| EaeI | YGGCCR | 1 cut(s) | 133 |
| Eam1104I | CTCTTC | 1 cut(s) | 470 |
| EarI | CTCTTC | 1 cut(s) | 470 |
| Eco57I | CTGAAG | 2 cut(s) | 576, 756 |
| Eco72I | CACGTG | 1 cut(s) | 131 |
| Eco88I | CYCGRG | 1 cut(s) | 75 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 507 |
| FaeI | CATG | 4 cut(s) | 143, 350, 509, 767 |
| FaqI | GGGAC | 2 cut(s) | 41, 337 |
| FatI | CATG | 4 cut(s) | 139, 346, 505, 763 |
| Fnu4HI | GCNGC | 1 cut(s) | 741 |
| FokI | GGATG | 1 cut(s) | 625 |
| Fsp4HI | GCNGC | 1 cut(s) | 741 |
| GluI | GCNGC | 1 cut(s) | 741 |
| HaeIII | GGCC | 3 cut(s) | 12, 135, 294 |
| HapII | CCGG | 4 cut(s) | 199, 265, 444, 674 |
| Hin1II | CATG | 4 cut(s) | 143, 350, 509, 767 |
| HinfI | GANTC | 1 cut(s) | 374 |
| HpaII | CCGG | 4 cut(s) | 199, 265, 444, 674 |
| Hpy188I | TCNGA | 5 cut(s) | 167, 233, 340, 423, 646 |
| Hpy188III | TCNNGA | 3 cut(s) | 75, 444, 485 |
| Hpy99I | CGWCG | 1 cut(s) | 18 |
| HpyCH4III | ACNGT | 2 cut(s) | 652, 750 |
| HpyCH4IV | ACGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 111, 143, 505, 569, 743 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 108, 300, 740 |
| HpyF3I | CTNAG | 1 cut(s) | 770 |
| HpySE526I | ACGT | 1 cut(s) | 130 |
| Hsp92II | CATG | 4 cut(s) | 143, 350, 509, 767 |
| Kpn2I | TCCGGA | 1 cut(s) | 443 |
| KpnI | GGTACC | 2 cut(s) | 199, 265 |
| Kzo9I | GATC | 3 cut(s) | 42, 517, 766 |
| Lsp1109I | GCAGC | 1 cut(s) | 727 |
| LweI | GCATC | 2 cut(s) | 13, 492 |
| MaeII | ACGT | 1 cut(s) | 130 |
| MalI | GATC | 3 cut(s) | 44, 519, 768 |
| MboI | GATC | 3 cut(s) | 42, 517, 766 |
| MboII | GAAGA | 3 cut(s) | 353, 487, 569 |
| MflI | RGATCY | 1 cut(s) | 517 |
| MluCI | AATT | 3 cut(s) | 209, 275, 713 |
| MlyI | GAGTC | 1 cut(s) | 368 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 507 |
| MroI | TCCGGA | 1 cut(s) | 443 |
| MseI | TTAA | 2 cut(s) | 551, 717 |
| MspI | CCGG | 4 cut(s) | 199, 265, 444, 674 |
| Mva1269I | GAATGC | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 108, 300, 740 |
| NdeII | GATC | 3 cut(s) | 42, 517, 766 |
| NlaIII | CATG | 4 cut(s) | 143, 350, 509, 767 |
| NlaIV | GGNNCC | 3 cut(s) | 197, 263, 672 |
| NsiI | ATGCAT | 2 cut(s) | 6, 507 |
| NspI | RCATGY | 2 cut(s) | 143, 350 |
| PaeR7I | CTCGAG | 1 cut(s) | 75 |
| PciI | ACATGT | 1 cut(s) | 346 |
| PctI | GAATGC | 1 cut(s) | 426 |
| PkrI | GCNGC | 1 cut(s) | 742 |
| PleI | GAGTC | 1 cut(s) | 368 |
| PmaCI | CACGTG | 1 cut(s) | 131 |
| PmlI | CACGTG | 1 cut(s) | 131 |
| PpsI | GAGTC | 1 cut(s) | 368 |
| Ppu21I | YACGTR | 1 cut(s) | 131 |
| PscI | ACATGT | 1 cut(s) | 346 |
| PspCI | CACGTG | 1 cut(s) | 131 |
| PspN4I | GGNNCC | 3 cut(s) | 197, 263, 672 |
| PspPI | GGNCC | 2 cut(s) | 10, 292 |
| PstI | CTGCAG | 1 cut(s) | 571 |
| PsuI | RGATCY | 1 cut(s) | 517 |
| RsaI | GTAC | 5 cut(s) | 197, 263, 565, 776, 784 |
| RsaNI | GTAC | 5 cut(s) | 196, 262, 564, 775, 783 |
| SaqAI | TTAA | 2 cut(s) | 551, 717 |
| SatI | GCNGC | 1 cut(s) | 741 |
| Sau3AI | GATC | 3 cut(s) | 42, 517, 766 |
| Sau96I | GGNCC | 2 cut(s) | 10, 292 |
| ScaI | AGTACT | 1 cut(s) | 565 |
| SchI | GAGTC | 1 cut(s) | 368 |
| SfaNI | GCATC | 2 cut(s) | 13, 492 |
| SfcI | CTRYAG | 1 cut(s) | 567 |
| Sfr274I | CTCGAG | 1 cut(s) | 75 |
| SlaI | CTCGAG | 1 cut(s) | 75 |
| SmlI | CTYRAG | 1 cut(s) | 75 |
| SmoI | CTYRAG | 1 cut(s) | 75 |
| Sse9I | AATT | 3 cut(s) | 209, 275, 713 |
| SsiI | CCGC | 1 cut(s) | 146 |
| TaaI | ACNGT | 2 cut(s) | 652, 750 |
| TaiI | ACGT | 1 cut(s) | 133 |
| TaqI | TCGA | 4 cut(s) | 16, 76, 360, 390 |
| TasI | AATT | 3 cut(s) | 209, 275, 713 |
| TatI | WGTACW | 1 cut(s) | 563 |
| Tru1I | TTAA | 2 cut(s) | 551, 717 |
| Tru9I | TTAA | 2 cut(s) | 551, 717 |
| TscAI | CASTG | 2 cut(s) | 535, 691 |
| TseI | GCWGC | 1 cut(s) | 740 |
| TspDTI | ATGAA | 1 cut(s) | 522 |
| TspRI | CASTG | 2 cut(s) | 535, 691 |
| XapI | RAATTY | 3 cut(s) | 209, 275, 713 |
| XceI | RCATGY | 2 cut(s) | 143, 350 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 691 |
| XhoI | CTCGAG | 1 cut(s) | 75 |
| ZrmI | AGTACT | 1 cut(s) | 565 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 507 |