Long chain base biosynthesis protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 573, 783 |
| AccI | GTMKAC | 2 cut(s) | 863, 932 |
| AclWI | GGATC | 1 cut(s) | 158 |
| AcoI | YGGCCR | 2 cut(s) | 112, 478 |
| AcsI | RAATTY | 6 cut(s) | 217, 295, 685, 777, 848, 1184 |
| AcuI | CTGAAG | 2 cut(s) | 810, 1196 |
| AfaI | GTAC | 1 cut(s) | 1018 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 883 |
| AflII | CTTAAG | 1 cut(s) | 1055 |
| AflIII | ACRYGT | 1 cut(s) | 7 |
| AluBI | AGCT | 7 cut(s) | 74, 608, 761, 1097, 1143, 1174, 1180 |
| AluI | AGCT | 7 cut(s) | 74, 608, 761, 1097, 1143, 1174, 1180 |
| Alw21I | GWGCWC | 1 cut(s) | 76 |
| Alw26I | GTCTC | 2 cut(s) | 759, 803 |
| AlwI | GGATC | 1 cut(s) | 158 |
| AoxI | GGCC | 5 cut(s) | 112, 232, 478, 656, 874 |
| ApeKI | GCWGC | 2 cut(s) | 455, 608 |
| ApoI | RAATTY | 6 cut(s) | 217, 295, 685, 777, 848, 1184 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 636 |
| AspS9I | GGNCC | 2 cut(s) | 656, 887 |
| AsuHPI | GGTGA | 2 cut(s) | 1058, 1077 |
| AvaII | GGWCC | 1 cut(s) | 887 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| Bbv12I | GWGCWC | 1 cut(s) | 76 |
| BbvI | GCAGC | 2 cut(s) | 467, 595 |
| BceAI | ACGGC | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 1191 |
| BcoDI | GTCTC | 2 cut(s) | 759, 803 |
| BfaI | CTAG | 2 cut(s) | 393, 612 |
| BfmI | CTRYAG | 4 cut(s) | 228, 453, 1020, 1098 |
| BfrI | CTTAAG | 1 cut(s) | 1055 |
| BisI | GCNGC | 2 cut(s) | 456, 609 |
| BlsI | GCNGC | 2 cut(s) | 457, 610 |
| Bme18I | GGWCC | 1 cut(s) | 887 |
| BmgT120I | GGNCC | 2 cut(s) | 656, 887 |
| BmiI | GGNNCC | 1 cut(s) | 888 |
| BmsI | GCATC | 2 cut(s) | 131, 1156 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 58, 90 |
| BpuEI | CTTGAG | 3 cut(s) | 166, 530, 741 |
| Bsa29I | ATCGAT | 2 cut(s) | 153, 1007 |
| BsaJI | CCNNGG | 1 cut(s) | 77 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 883 |
| Bse1I | ACTGG | 1 cut(s) | 424 |
| Bse3DI | GCAATG | 1 cut(s) | 903 |
| BseCI | ATCGAT | 2 cut(s) | 153, 1007 |
| BseDI | CCNNGG | 1 cut(s) | 77 |
| BseGI | GGATG | 3 cut(s) | 48, 146, 1171 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 883 |
| BseMI | GCAATG | 1 cut(s) | 903 |
| BseMII | CTCAG | 1 cut(s) | 858 |
| BseNI | ACTGG | 1 cut(s) | 424 |
| BseRI | GAGGAG | 1 cut(s) | 82 |
| BseXI | GCAGC | 2 cut(s) | 467, 595 |
| BshFI | GGCC | 5 cut(s) | 114, 234, 480, 658, 876 |
| BshVI | ATCGAT | 2 cut(s) | 153, 1007 |
| BsiHKAI | GWGCWC | 1 cut(s) | 76 |
| BslFI | GGGAC | 2 cut(s) | 18, 900 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 883 |
| BsmAI | GTCTC | 2 cut(s) | 759, 803 |
| BsmFI | GGGAC | 2 cut(s) | 18, 900 |
| BsmI | GAATGC | 2 cut(s) | 770, 918 |
| BsnI | GGCC | 5 cut(s) | 114, 234, 480, 658, 876 |
| Bsp1286I | GDGCHC | 1 cut(s) | 76 |
| Bsp143I | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| BspANI | GGCC | 5 cut(s) | 114, 234, 480, 658, 876 |
| BspCNI | CTCAG | 1 cut(s) | 859 |
| BspDI | ATCGAT | 2 cut(s) | 153, 1007 |
| BspLI | GGNNCC | 1 cut(s) | 888 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspPI | GGATC | 1 cut(s) | 158 |
| BspTI | CTTAAG | 1 cut(s) | 1055 |
| BsrDI | GCAATG | 1 cut(s) | 903 |
| BsrI | ACTGG | 1 cut(s) | 424 |
| BssECI | CCNNGG | 1 cut(s) | 77 |
| BssMI | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| BssNAI | GTATAC | 2 cut(s) | 864, 933 |
| BssT1I | CCWWGG | 1 cut(s) | 77 |
| Bst1107I | GTATAC | 2 cut(s) | 864, 933 |
| Bst4CI | ACNGT | 2 cut(s) | 350, 358 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstAFI | CTTAAG | 1 cut(s) | 1055 |
| BstC8I | GCNNGC | 4 cut(s) | 531, 874, 878, 1145 |
| BstDEI | CTNAG | 1 cut(s) | 867 |
| BstF5I | GGATG | 3 cut(s) | 48, 146, 1171 |
| BstKTI | GATC | 5 cut(s) | 153, 833, 1007, 1085, 1194 |
| BstMAI | GTCTC | 2 cut(s) | 759, 803 |
| BstMBI | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 767, 1144 |
| BstSFI | CTRYAG | 4 cut(s) | 228, 453, 1020, 1098 |
| BstV1I | GCAGC | 2 cut(s) | 467, 595 |
| BstZ17I | GTATAC | 2 cut(s) | 864, 933 |
| Bsu15I | ATCGAT | 2 cut(s) | 153, 1007 |
| BsuRI | GGCC | 5 cut(s) | 114, 234, 480, 658, 876 |
| BsuTUI | ATCGAT | 2 cut(s) | 153, 1007 |
| BtsCI | GGATG | 3 cut(s) | 48, 146, 1171 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| Cac8I | GCNNGC | 4 cut(s) | 531, 874, 878, 1145 |
| Cfr13I | GGNCC | 2 cut(s) | 656, 887 |
| ClaI | ATCGAT | 2 cut(s) | 153, 1007 |
| Csp6I | GTAC | 1 cut(s) | 1017 |
| CviAII | CATG | 3 cut(s) | 39, 914, 1156 |
| CviQI | GTAC | 1 cut(s) | 1017 |
| DdeI | CTNAG | 1 cut(s) | 867 |
| DpnI | GATC | 5 cut(s) | 152, 832, 1006, 1084, 1193 |
| DpnII | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| EaeI | YGGCCR | 2 cut(s) | 112, 478 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| Ecl136II | GAGCTC | 1 cut(s) | 74 |
| Eco130I | CCWWGG | 1 cut(s) | 77 |
| Eco147I | AGGCCT | 1 cut(s) | 234 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 887 |
| Eco53kI | GAGCTC | 1 cut(s) | 74 |
| Eco57I | CTGAAG | 2 cut(s) | 810, 1196 |
| EcoICRI | GAGCTC | 1 cut(s) | 74 |
| EcoO109I | RGGNCCY | 1 cut(s) | 887 |
| EcoRI | GAATTC | 1 cut(s) | 295 |
| EcoT14I | CCWWGG | 1 cut(s) | 77 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| ErhI | CCWWGG | 1 cut(s) | 77 |
| FaeI | CATG | 3 cut(s) | 42, 917, 1159 |
| FaqI | GGGAC | 2 cut(s) | 18, 900 |
| FatI | CATG | 3 cut(s) | 38, 913, 1155 |
| FauNDI | CATATG | 1 cut(s) | 1114 |
| FbaI | TGATCA | 1 cut(s) | 1191 |
| FblI | GTMKAC | 2 cut(s) | 863, 932 |
| Fnu4HI | GCNGC | 2 cut(s) | 456, 609 |
| FokI | GGATG | 3 cut(s) | 55, 153, 1178 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| Fsp4HI | GCNGC | 2 cut(s) | 456, 609 |
| FspBI | CTAG | 2 cut(s) | 393, 612 |
| GluI | GCNGC | 2 cut(s) | 456, 609 |
| HaeIII | GGCC | 5 cut(s) | 114, 234, 480, 658, 876 |
| Hin1II | CATG | 3 cut(s) | 42, 917, 1159 |
| HindIII | AAGCTT | 1 cut(s) | 759 |
| HinfI | GANTC | 2 cut(s) | 370, 474 |
| HphI | GGTGA | 2 cut(s) | 1058, 1077 |
| Hpy166II | GTNNAC | 3 cut(s) | 864, 933, 1017 |
| Hpy188I | TCNGA | 5 cut(s) | 294, 748, 790, 830, 835 |
| Hpy188III | TCNNGA | 2 cut(s) | 393, 1189 |
| Hpy8I | GTNNAC | 3 cut(s) | 864, 933, 1017 |
| HpyAV | CCTTC | 3 cut(s) | 10, 158, 1098 |
| HpyCH4III | ACNGT | 2 cut(s) | 350, 358 |
| HpyCH4IV | ACGT | 1 cut(s) | 9 |
| HpyCH4V | TGCA | 8 cut(s) | 455, 533, 802, 896, 1064, 1077, 1147, 1169 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 767, 1144 |
| HpyF3I | CTNAG | 1 cut(s) | 867 |
| HpySE526I | ACGT | 1 cut(s) | 9 |
| Hsp92II | CATG | 3 cut(s) | 42, 917, 1159 |
| Ksp22I | TGATCA | 1 cut(s) | 1191 |
| Kzo9I | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| LmnI | GCTCC | 1 cut(s) | 79 |
| LpnPI | CCDG | 7 cut(s) | 300, 398, 405, 543, 607, 858, 890 |
| Lsp1109I | GCAGC | 2 cut(s) | 467, 595 |
| LweI | GCATC | 2 cut(s) | 131, 1156 |
| MaeI | CTAG | 2 cut(s) | 393, 612 |
| MaeII | ACGT | 1 cut(s) | 9 |
| MaeIII | GTNAC | 2 cut(s) | 415, 617 |
| MalI | GATC | 5 cut(s) | 152, 832, 1006, 1084, 1193 |
| MboI | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| MboII | GAAGA | 3 cut(s) | 223, 365, 1144 |
| MhlI | GDGCHC | 1 cut(s) | 76 |
| MlyI | GAGTC | 1 cut(s) | 468 |
| MmeI | TCCRAC | 1 cut(s) | 974 |
| MnlI | CCTC | 7 cut(s) | 60, 141, 207, 214, 833, 852, 862 |
| MroXI | GAANNNNTTC | 1 cut(s) | 636 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1154 |
| MspA1I | CMGCKG | 1 cut(s) | 608 |
| MspCI | CTTAAG | 1 cut(s) | 1055 |
| Mva1269I | GAATGC | 2 cut(s) | 770, 918 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 767, 1144 |
| NdeI | CATATG | 1 cut(s) | 1114 |
| NdeII | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| NlaIII | CATG | 3 cut(s) | 42, 917, 1159 |
| NlaIV | GGNNCC | 1 cut(s) | 888 |
| NmeAIII | GCCGAG | 2 cut(s) | 456, 1164 |
| NmuCI | GTSAC | 1 cut(s) | 415 |
| PceI | AGGCCT | 1 cut(s) | 234 |
| PctI | GAATGC | 2 cut(s) | 770, 918 |
| PdmI | GAANNNNTTC | 1 cut(s) | 636 |
| PfeI | GAWTC | 1 cut(s) | 370 |
| PkrI | GCNGC | 2 cut(s) | 457, 610 |
| PleI | GAGTC | 1 cut(s) | 468 |
| PpsI | GAGTC | 1 cut(s) | 468 |
| PpuMI | RGGWCCY | 1 cut(s) | 887 |
| PsiI | TTATAA | 2 cut(s) | 573, 783 |
| Psp124BI | GAGCTC | 1 cut(s) | 76 |
| Psp5II | RGGWCCY | 1 cut(s) | 887 |
| PspN4I | GGNNCC | 1 cut(s) | 888 |
| PspPI | GGNCC | 2 cut(s) | 656, 887 |
| PspPPI | RGGWCCY | 1 cut(s) | 887 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PvuII | CAGCTG | 1 cut(s) | 608 |
| RsaI | GTAC | 1 cut(s) | 1018 |
| RsaNI | GTAC | 1 cut(s) | 1017 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1154 |
| SacI | GAGCTC | 1 cut(s) | 76 |
| SatI | GCNGC | 2 cut(s) | 456, 609 |
| Sau3AI | GATC | 5 cut(s) | 150, 830, 1004, 1082, 1191 |
| Sau96I | GGNCC | 2 cut(s) | 656, 887 |
| SchI | GAGTC | 1 cut(s) | 468 |
| SduI | GDGCHC | 1 cut(s) | 76 |
| SfaNI | GCATC | 2 cut(s) | 131, 1156 |
| SfcI | CTRYAG | 4 cut(s) | 228, 453, 1020, 1098 |
| SinI | GGWCC | 1 cut(s) | 887 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1154 |
| SmlI | CTYRAG | 4 cut(s) | 145, 509, 756, 1055 |
| SmoI | CTYRAG | 4 cut(s) | 145, 509, 756, 1055 |
| SseBI | AGGCCT | 1 cut(s) | 234 |
| SspMI | CTAG | 2 cut(s) | 393, 612 |
| SstI | GAGCTC | 1 cut(s) | 76 |
| StuI | AGGCCT | 1 cut(s) | 234 |
| StyI | CCWWGG | 1 cut(s) | 77 |
| TaaI | ACNGT | 2 cut(s) | 350, 358 |
| TaiI | ACGT | 1 cut(s) | 12 |
| TaqI | TCGA | 3 cut(s) | 153, 243, 1007 |
| TatI | WGTACW | 1 cut(s) | 1016 |
| TfiI | GAWTC | 1 cut(s) | 370 |
| TscAI | CASTG | 1 cut(s) | 424 |
| TseFI | GTSAC | 1 cut(s) | 415 |
| TseI | GCWGC | 2 cut(s) | 455, 608 |
| Tsp45I | GTSAC | 1 cut(s) | 415 |
| TspDTI | ATGAA | 4 cut(s) | 629, 685, 694, 1144 |
| TspRI | CASTG | 1 cut(s) | 424 |
| Vha464I | CTTAAG | 1 cut(s) | 1055 |
| VpaK11BI | GGWCC | 1 cut(s) | 887 |
| XapI | RAATTY | 6 cut(s) | 217, 295, 685, 777, 848, 1184 |
| XbaI | TCTAGA | 1 cut(s) | 392 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1119 |
| XmiI | GTMKAC | 2 cut(s) | 863, 932 |
| XmnI | GAANNNNTTC | 1 cut(s) | 636 |
| XspI | CTAG | 2 cut(s) | 393, 612 |