gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 834 |
| AarI | CACCTGC | 1 cut(s) | 133 |
| Acc36I | ACCTGC | 2 cut(s) | 133, 1285 |
| AclWI | GGATC | 2 cut(s) | 104, 1328 |
| AcsI | RAATTY | 3 cut(s) | 1128, 1167, 1313 |
| AfaI | GTAC | 1 cut(s) | 620 |
| AflII | CTTAAG | 1 cut(s) | 407 |
| AhlI | ACTAGT | 1 cut(s) | 1079 |
| AluBI | AGCT | 5 cut(s) | 222, 389, 853, 962, 1352 |
| AluI | AGCT | 5 cut(s) | 222, 389, 853, 962, 1352 |
| Alw21I | GWGCWC | 1 cut(s) | 1015 |
| Alw26I | GTCTC | 3 cut(s) | 51, 158, 1184 |
| Alw44I | GTGCAC | 1 cut(s) | 1011 |
| AlwI | GGATC | 2 cut(s) | 104, 1328 |
| AoxI | GGCC | 1 cut(s) | 412 |
| ApaLI | GTGCAC | 1 cut(s) | 1011 |
| ApeKI | GCWGC | 5 cut(s) | 128, 454, 628, 962, 1352 |
| ApoI | RAATTY | 3 cut(s) | 1128, 1167, 1313 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 464, 749, 1065 |
| AspS9I | GGNCC | 2 cut(s) | 412, 737 |
| AsuHPI | GGTGA | 1 cut(s) | 1301 |
| AvaII | GGWCC | 1 cut(s) | 737 |
| BaeGI | GKGCMC | 1 cut(s) | 1015 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1010, 1042 |
| BbsI | GAAGAC | 1 cut(s) | 1279 |
| Bbv12I | GWGCWC | 1 cut(s) | 1015 |
| BbvCI | CCTCAGC | 1 cut(s) | 1233 |
| BbvI | GCAGC | 5 cut(s) | 115, 441, 640, 949, 1339 |
| BccI | CCATC | 3 cut(s) | 668, 785, 997 |
| BclI | TGATCA | 1 cut(s) | 91 |
| BcoDI | GTCTC | 3 cut(s) | 51, 158, 1184 |
| BcuI | ACTAGT | 1 cut(s) | 1079 |
| BfaI | CTAG | 2 cut(s) | 1080, 1269 |
| BfrI | CTTAAG | 1 cut(s) | 407 |
| BfuAI | ACCTGC | 2 cut(s) | 133, 1285 |
| BisI | GCNGC | 5 cut(s) | 129, 455, 629, 963, 1353 |
| BlsI | GCNGC | 5 cut(s) | 130, 456, 630, 964, 1354 |
| Bme18I | GGWCC | 1 cut(s) | 737 |
| BmgT120I | GGNCC | 2 cut(s) | 412, 737 |
| BmiI | GGNNCC | 1 cut(s) | 435 |
| BmrI | ACTGGG | 1 cut(s) | 363 |
| BmsI | GCATC | 4 cut(s) | 15, 210, 372, 493 |
| BmuI | ACTGGG | 1 cut(s) | 363 |
| BpiI | GAAGAC | 1 cut(s) | 1279 |
| BpmI | CTGGAG | 1 cut(s) | 711 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1233 |
| BpuEI | CTTGAG | 4 cut(s) | 86, 913, 1158, 1179 |
| BsaBI | GATNNNNATC | 1 cut(s) | 200 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| Bse1I | ACTGG | 7 cut(s) | 343, 358, 447, 684, 772, 809, 1244 |
| Bse3DI | GCAATG | 1 cut(s) | 1398 |
| Bse8I | GATNNNNATC | 1 cut(s) | 200 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseGI | GGATG | 2 cut(s) | 177, 1045 |
| BseJI | GATNNNNATC | 1 cut(s) | 200 |
| BseMI | GCAATG | 1 cut(s) | 1398 |
| BseMII | CTCAG | 2 cut(s) | 300, 1224 |
| BseNI | ACTGG | 7 cut(s) | 343, 358, 447, 684, 772, 809, 1244 |
| BseRI | GAGGAG | 1 cut(s) | 1267 |
| BseSI | GKGCMC | 1 cut(s) | 1015 |
| BseXI | GCAGC | 5 cut(s) | 115, 441, 640, 949, 1339 |
| BsgI | GTGCAG | 2 cut(s) | 105, 572 |
| BshFI | GGCC | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1015 |
| BsmAI | GTCTC | 3 cut(s) | 51, 158, 1184 |
| BsmI | GAATGC | 2 cut(s) | 237, 965 |
| BsnI | GGCC | 1 cut(s) | 414 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1015 |
| Bsp143I | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| BspANI | GGCC | 1 cut(s) | 414 |
| BspCNI | CTCAG | 2 cut(s) | 301, 1225 |
| BspHI | TCATGA | 1 cut(s) | 378 |
| BspLI | GGNNCC | 1 cut(s) | 435 |
| BspMI | ACCTGC | 2 cut(s) | 133, 1285 |
| BspPI | GGATC | 2 cut(s) | 104, 1328 |
| BspTI | CTTAAG | 1 cut(s) | 407 |
| BsrDI | GCAATG | 1 cut(s) | 1398 |
| BsrI | ACTGG | 7 cut(s) | 343, 358, 447, 684, 772, 809, 1244 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 1 cut(s) | 1213 |
| Bst6I | CTCTTC | 1 cut(s) | 555 |
| BstAFI | CTTAAG | 1 cut(s) | 407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 128 |
| BstDEI | CTNAG | 4 cut(s) | 150, 282, 309, 1233 |
| BstF5I | GGATG | 2 cut(s) | 177, 1045 |
| BstKTI | GATC | 6 cut(s) | 94, 112, 198, 540, 1259, 1336 |
| BstMAI | GTCTC | 3 cut(s) | 51, 158, 1184 |
| BstMBI | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 128, 134, 219, 278, 395 |
| BstNSI | RCATGY | 1 cut(s) | 1417 |
| BstSLI | GKGCMC | 1 cut(s) | 1015 |
| BstV1I | GCAGC | 5 cut(s) | 115, 441, 640, 949, 1339 |
| BstV2I | GAAGAC | 1 cut(s) | 1279 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BsuRI | GGCC | 1 cut(s) | 414 |
| BtsCI | GGATG | 2 cut(s) | 177, 1045 |
| BtsI | GCAGTG | 2 cut(s) | 117, 1140 |
| BtsIMutI | CAGTG | 4 cut(s) | 117, 191, 351, 1140 |
| BveI | ACCTGC | 2 cut(s) | 133, 1285 |
| CciI | TCATGA | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 2 cut(s) | 412, 737 |
| Csp6I | GTAC | 1 cut(s) | 619 |
| CviAII | CATG | 6 cut(s) | 95, 214, 229, 379, 1036, 1414 |
| CviQI | GTAC | 1 cut(s) | 619 |
| DdeI | CTNAG | 4 cut(s) | 150, 282, 309, 1233 |
| DpnI | GATC | 6 cut(s) | 93, 111, 197, 539, 1258, 1335 |
| DpnII | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| Eam1104I | CTCTTC | 1 cut(s) | 555 |
| EarI | CTCTTC | 1 cut(s) | 555 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco47I | GGWCC | 1 cut(s) | 737 |
| EcoO109I | RGGNCCY | 1 cut(s) | 412 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 6 cut(s) | 98, 217, 232, 382, 1039, 1417 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 737, 769, 1389, 1421 |
| FatI | CATG | 6 cut(s) | 94, 213, 228, 378, 1035, 1413 |
| FbaI | TGATCA | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 5 cut(s) | 129, 455, 629, 963, 1353 |
| FokI | GGATG | 2 cut(s) | 184, 1052 |
| Fsp4HI | GCNGC | 5 cut(s) | 129, 455, 629, 963, 1353 |
| FspBI | CTAG | 2 cut(s) | 1080, 1269 |
| GluI | GCNGC | 5 cut(s) | 129, 455, 629, 963, 1353 |
| GsuI | CTGGAG | 1 cut(s) | 711 |
| HaeIII | GGCC | 1 cut(s) | 414 |
| Hin1II | CATG | 6 cut(s) | 98, 217, 232, 382, 1039, 1417 |
| HindIII | AAGCTT | 1 cut(s) | 851 |
| HinfI | GANTC | 4 cut(s) | 245, 342, 869, 1192 |
| HphI | GGTGA | 1 cut(s) | 1301 |
| Hpy166II | GTNNAC | 1 cut(s) | 1013 |
| Hpy188I | TCNGA | 7 cut(s) | 45, 250, 489, 708, 868, 895, 1261 |
| Hpy188III | TCNNGA | 8 cut(s) | 242, 379, 690, 778, 1058, 1133, 1175, 1196 |
| Hpy8I | GTNNAC | 1 cut(s) | 1013 |
| HpyAV | CCTTC | 1 cut(s) | 775 |
| HpyCH4III | ACNGT | 1 cut(s) | 1213 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 128, 134, 219, 278, 395 |
| HpyF3I | CTNAG | 4 cut(s) | 150, 282, 309, 1233 |
| Hsp92II | CATG | 6 cut(s) | 98, 217, 232, 382, 1039, 1417 |
| Ksp22I | TGATCA | 1 cut(s) | 91 |
| Kzo9I | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| LmnI | GCTCC | 1 cut(s) | 386 |
| Lsp1109I | GCAGC | 5 cut(s) | 115, 441, 640, 949, 1339 |
| LweI | GCATC | 4 cut(s) | 15, 210, 372, 493 |
| MaeI | CTAG | 2 cut(s) | 1080, 1269 |
| MaeIII | GTNAC | 3 cut(s) | 665, 1138, 1373 |
| MalI | GATC | 6 cut(s) | 93, 111, 197, 539, 1258, 1335 |
| MboI | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| MboII | GAAGA | 8 cut(s) | 119, 569, 572, 745, 1030, 1284, 1340, 1409 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 1 cut(s) | 1015 |
| MluCI | AATT | 9 cut(s) | 15, 20, 632, 1061, 1128, 1158, 1167, 1281, 1313 |
| MlyI | GAGTC | 2 cut(s) | 336, 1186 |
| MmeI | TCCRAC | 1 cut(s) | 1361 |
| MroXI | GAANNNNTTC | 3 cut(s) | 464, 749, 1065 |
| MseI | TTAA | 3 cut(s) | 408, 1182, 1347 |
| MslI | CAYNNNNRTG | 2 cut(s) | 548, 1302 |
| MspCI | CTTAAG | 1 cut(s) | 407 |
| Mva1269I | GAATGC | 2 cut(s) | 237, 965 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 128, 134, 219, 278, 395 |
| NdeII | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| NlaIII | CATG | 6 cut(s) | 98, 217, 232, 382, 1039, 1417 |
| NlaIV | GGNNCC | 1 cut(s) | 435 |
| NmuCI | GTSAC | 2 cut(s) | 1138, 1373 |
| NspI | RCATGY | 1 cut(s) | 1417 |
| PagI | TCATGA | 1 cut(s) | 378 |
| PaqCI | CACCTGC | 1 cut(s) | 133 |
| PctI | GAATGC | 2 cut(s) | 237, 965 |
| PdmI | GAANNNNTTC | 3 cut(s) | 464, 749, 1065 |
| PfeI | GAWTC | 2 cut(s) | 245, 869 |
| PkrI | GCNGC | 5 cut(s) | 130, 456, 630, 964, 1354 |
| PleI | GAGTC | 2 cut(s) | 336, 1186 |
| PpsI | GAGTC | 2 cut(s) | 336, 1186 |
| PsiI | TTATAA | 1 cut(s) | 834 |
| PspN4I | GGNNCC | 1 cut(s) | 435 |
| PspPI | GGNCC | 2 cut(s) | 412, 737 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 1 cut(s) | 620 |
| RsaNI | GTAC | 1 cut(s) | 619 |
| RseI | CAYNNNNRTG | 2 cut(s) | 548, 1302 |
| SaqAI | TTAA | 3 cut(s) | 408, 1182, 1347 |
| SatI | GCNGC | 5 cut(s) | 129, 455, 629, 963, 1353 |
| Sau3AI | GATC | 6 cut(s) | 91, 109, 195, 537, 1256, 1333 |
| Sau96I | GGNCC | 2 cut(s) | 412, 737 |
| SchI | GAGTC | 2 cut(s) | 336, 1186 |
| SduI | GDGCHC | 1 cut(s) | 1015 |
| SetI | ASST | 9 cut(s) | 127, 224, 297, 391, 591, 855, 964, 1279, 1354 |
| SfaNI | GCATC | 4 cut(s) | 15, 210, 372, 493 |
| SinI | GGWCC | 1 cut(s) | 737 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 548, 1302 |
| SmlI | CTYRAG | 5 cut(s) | 101, 407, 928, 1173, 1194 |
| SmoI | CTYRAG | 5 cut(s) | 101, 407, 928, 1173, 1194 |
| SpeI | ACTAGT | 1 cut(s) | 1079 |
| Sse9I | AATT | 9 cut(s) | 15, 20, 632, 1061, 1128, 1158, 1167, 1281, 1313 |
| SspI | AATATT | 1 cut(s) | 945 |
| SspMI | CTAG | 2 cut(s) | 1080, 1269 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaaI | ACNGT | 1 cut(s) | 1213 |
| TaqI | TCGA | 1 cut(s) | 275 |
| TasI | AATT | 9 cut(s) | 15, 20, 632, 1061, 1128, 1158, 1167, 1281, 1313 |
| TatI | WGTACW | 1 cut(s) | 618 |
| TfiI | GAWTC | 2 cut(s) | 245, 869 |
| Tru1I | TTAA | 3 cut(s) | 408, 1182, 1347 |
| Tru9I | TTAA | 3 cut(s) | 408, 1182, 1347 |
| TscAI | CASTG | 4 cut(s) | 124, 198, 358, 1147 |
| TseFI | GTSAC | 2 cut(s) | 1138, 1373 |
| TseI | GCWGC | 5 cut(s) | 128, 454, 628, 962, 1352 |
| Tsp45I | GTSAC | 2 cut(s) | 1138, 1373 |
| TspRI | CASTG | 4 cut(s) | 124, 198, 358, 1147 |
| Vha464I | CTTAAG | 1 cut(s) | 407 |
| VneI | GTGCAC | 1 cut(s) | 1011 |
| VpaK11BI | GGWCC | 1 cut(s) | 737 |
| XapI | RAATTY | 3 cut(s) | 1128, 1167, 1313 |
| XceI | RCATGY | 1 cut(s) | 1417 |
| XmnI | GAANNNNTTC | 3 cut(s) | 464, 749, 1065 |
| XspI | CTAG | 2 cut(s) | 1080, 1269 |