gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 484 |
| AclWI | GGATC | 2 cut(s) | 174, 464 |
| AcuI | CTGAAG | 1 cut(s) | 141 |
| AfaI | GTAC | 2 cut(s) | 211, 353 |
| AgsI | TTSAA | 2 cut(s) | 130, 349 |
| AluBI | AGCT | 6 cut(s) | 47, 256, 320, 421, 452, 532 |
| AluI | AGCT | 6 cut(s) | 47, 256, 320, 421, 452, 532 |
| Alw21I | GWGCWC | 2 cut(s) | 143, 423 |
| AlwI | GGATC | 2 cut(s) | 174, 464 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| AsuNHI | GCTAGC | 1 cut(s) | 256 |
| BanII | GRGCYC | 1 cut(s) | 423 |
| Bbv12I | GWGCWC | 2 cut(s) | 143, 423 |
| BbvI | GCAGC | 1 cut(s) | 329 |
| BccI | CCATC | 3 cut(s) | 184, 421, 494 |
| BclI | TGATCA | 1 cut(s) | 393 |
| BfaI | CTAG | 4 cut(s) | 53, 257, 321, 453 |
| BfmI | CTRYAG | 2 cut(s) | 40, 480 |
| BfuAI | ACCTGC | 1 cut(s) | 484 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| BmiI | GGNNCC | 1 cut(s) | 34 |
| BmsI | GCATC | 2 cut(s) | 12, 269 |
| BmtI | GCTAGC | 1 cut(s) | 260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 1 cut(s) | 330 |
| Bse1I | ACTGG | 1 cut(s) | 34 |
| BseDI | CCNNGG | 1 cut(s) | 330 |
| BseGI | GGATG | 2 cut(s) | 195, 445 |
| BseMII | CTCAG | 2 cut(s) | 99, 243 |
| BseNI | ACTGG | 1 cut(s) | 34 |
| BseXI | GCAGC | 1 cut(s) | 329 |
| BsiHKAI | GWGCWC | 2 cut(s) | 143, 423 |
| BsmI | GAATGC | 1 cut(s) | 84 |
| Bsp1286I | GDGCHC | 2 cut(s) | 143, 423 |
| Bsp143I | GATC | 3 cut(s) | 179, 393, 456 |
| BspCNI | CTCAG | 2 cut(s) | 100, 244 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 1 cut(s) | 34 |
| BspMI | ACCTGC | 1 cut(s) | 484 |
| BspOI | GCTAGC | 1 cut(s) | 260 |
| BspPI | GGATC | 2 cut(s) | 174, 464 |
| BspQI | GCTCTTC | 1 cut(s) | 240 |
| BsrI | ACTGG | 1 cut(s) | 34 |
| BssECI | CCNNGG | 1 cut(s) | 330 |
| BssMI | GATC | 3 cut(s) | 179, 393, 456 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 2 cut(s) | 14, 229 |
| Bst6I | CTCTTC | 2 cut(s) | 117, 240 |
| BstC8I | GCNNGC | 1 cut(s) | 258 |
| BstDEI | CTNAG | 7 cut(s) | 108, 144, 195, 252, 288, 413, 507 |
| BstEII | GGTNACC | 1 cut(s) | 325 |
| BstF5I | GGATG | 2 cut(s) | 195, 445 |
| BstKTI | GATC | 3 cut(s) | 182, 396, 459 |
| BstMBI | GATC | 3 cut(s) | 179, 393, 456 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 317 |
| BstPI | GGTNACC | 1 cut(s) | 325 |
| BstSFI | CTRYAG | 2 cut(s) | 40, 480 |
| BstV1I | GCAGC | 1 cut(s) | 329 |
| BstX2I | RGATCY | 1 cut(s) | 179 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 179 |
| BtsCI | GGATG | 2 cut(s) | 195, 445 |
| BtsIMutI | CAGTG | 1 cut(s) | 19 |
| BveI | ACCTGC | 1 cut(s) | 484 |
| Cac8I | GCNNGC | 1 cut(s) | 258 |
| CciI | TCATGA | 1 cut(s) | 340 |
| Csp6I | GTAC | 2 cut(s) | 210, 352 |
| CviAII | CATG | 3 cut(s) | 83, 341, 355 |
| CviQI | GTAC | 2 cut(s) | 210, 352 |
| DdeI | CTNAG | 7 cut(s) | 108, 144, 195, 252, 288, 413, 507 |
| DpnI | GATC | 3 cut(s) | 181, 395, 458 |
| DpnII | GATC | 3 cut(s) | 179, 393, 456 |
| DraI | TTTAAA | 1 cut(s) | 295 |
| Eam1104I | CTCTTC | 2 cut(s) | 117, 240 |
| EarI | CTCTTC | 2 cut(s) | 117, 240 |
| Ecl136II | GAGCTC | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco24I | GRGCYC | 1 cut(s) | 423 |
| Eco53kI | GAGCTC | 1 cut(s) | 421 |
| Eco57I | CTGAAG | 1 cut(s) | 141 |
| Eco91I | GGTNACC | 1 cut(s) | 325 |
| EcoICRI | GAGCTC | 1 cut(s) | 421 |
| EcoO65I | GGTNACC | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 423 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 3 cut(s) | 86, 344, 358 |
| FatI | CATG | 3 cut(s) | 82, 340, 354 |
| FbaI | TGATCA | 1 cut(s) | 393 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 2 cut(s) | 202, 452 |
| FriOI | GRGCYC | 1 cut(s) | 423 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| FspBI | CTAG | 4 cut(s) | 53, 257, 321, 453 |
| GluI | GCNGC | 1 cut(s) | 318 |
| Hin1II | CATG | 3 cut(s) | 86, 344, 358 |
| HinfI | GANTC | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 2 cut(s) | 233, 265 |
| Hpy188III | TCNNGA | 3 cut(s) | 19, 341, 424 |
| HpyCH4III | ACNGT | 2 cut(s) | 14, 229 |
| HpyCH4V | TGCA | 2 cut(s) | 62, 82 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 317 |
| HpyF3I | CTNAG | 7 cut(s) | 108, 144, 195, 252, 288, 413, 507 |
| Hsp92II | CATG | 3 cut(s) | 86, 344, 358 |
| Ksp22I | TGATCA | 1 cut(s) | 393 |
| Kzo9I | GATC | 3 cut(s) | 179, 393, 456 |
| LguI | GCTCTTC | 1 cut(s) | 240 |
| LpnPI | CCDG | 7 cut(s) | 15, 132, 264, 348, 431, 489, 536 |
| Lsp1109I | GCAGC | 1 cut(s) | 329 |
| LweI | GCATC | 2 cut(s) | 12, 269 |
| MaeI | CTAG | 4 cut(s) | 53, 257, 321, 453 |
| MaeIII | GTNAC | 2 cut(s) | 103, 325 |
| MalI | GATC | 3 cut(s) | 181, 395, 458 |
| MboI | GATC | 3 cut(s) | 179, 393, 456 |
| MboII | GAAGA | 5 cut(s) | 134, 257, 400, 476, 523 |
| MflI | RGATCY | 1 cut(s) | 179 |
| MhlI | GDGCHC | 2 cut(s) | 143, 423 |
| MnlI | CCTC | 3 cut(s) | 103, 223, 227 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MseI | TTAA | 1 cut(s) | 294 |
| Mva1269I | GAATGC | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 317 |
| NdeII | GATC | 3 cut(s) | 179, 393, 456 |
| NheI | GCTAGC | 1 cut(s) | 256 |
| NlaIII | CATG | 3 cut(s) | 86, 344, 358 |
| NlaIV | GGNNCC | 1 cut(s) | 34 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PciSI | GCTCTTC | 1 cut(s) | 240 |
| PctI | GAATGC | 1 cut(s) | 84 |
| PfeI | GAWTC | 1 cut(s) | 199 |
| PflFI | GACNNNGTC | 1 cut(s) | 14 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| Psp124BI | GAGCTC | 1 cut(s) | 423 |
| PspEI | GGTNACC | 1 cut(s) | 325 |
| PspN4I | GGNNCC | 1 cut(s) | 34 |
| PsuI | RGATCY | 1 cut(s) | 179 |
| PsyI | GACNNNGTC | 1 cut(s) | 14 |
| RsaI | GTAC | 2 cut(s) | 211, 353 |
| RsaNI | GTAC | 2 cut(s) | 210, 352 |
| SacI | GAGCTC | 1 cut(s) | 423 |
| SapI | GCTCTTC | 1 cut(s) | 240 |
| SaqAI | TTAA | 1 cut(s) | 294 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 3 cut(s) | 179, 393, 456 |
| SduI | GDGCHC | 2 cut(s) | 143, 423 |
| SfaNI | GCATC | 2 cut(s) | 12, 269 |
| SfcI | CTRYAG | 2 cut(s) | 40, 480 |
| SmlI | CTYRAG | 1 cut(s) | 533 |
| SmoI | CTYRAG | 1 cut(s) | 533 |
| SspMI | CTAG | 4 cut(s) | 53, 257, 321, 453 |
| SstI | GAGCTC | 1 cut(s) | 423 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 2 cut(s) | 14, 229 |
| TatI | WGTACW | 1 cut(s) | 351 |
| TfiI | GAWTC | 1 cut(s) | 199 |
| Tru1I | TTAA | 1 cut(s) | 294 |
| Tru9I | TTAA | 1 cut(s) | 294 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseI | GCWGC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 17, 147, 329, 401, 456 |
| TspRI | CASTG | 1 cut(s) | 19 |
| Tth111I | GACNNNGTC | 1 cut(s) | 14 |
| XspI | CTAG | 4 cut(s) | 53, 257, 321, 453 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |