gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 19 - 170 | 5.7e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 139 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 13 |
| AccI | GTMKAC | 1 cut(s) | 605 |
| AcsI | RAATTY | 2 cut(s) | 257, 641 |
| AfaI | GTAC | 3 cut(s) | 83, 215, 275 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 13, 349 |
| AflII | CTTAAG | 2 cut(s) | 269, 455 |
| AgsI | TTSAA | 2 cut(s) | 539, 640 |
| AhlI | ACTAGT | 2 cut(s) | 53, 422 |
| AleI | CACNNNNGTG | 1 cut(s) | 524 |
| AluBI | AGCT | 6 cut(s) | 268, 334, 405, 463, 574, 620 |
| AluI | AGCT | 6 cut(s) | 268, 334, 405, 463, 574, 620 |
| Ama87I | CYCGRG | 1 cut(s) | 610 |
| ApeKI | GCWGC | 2 cut(s) | 380, 617 |
| ApoI | RAATTY | 2 cut(s) | 257, 641 |
| AseI | ATTAAT | 1 cut(s) | 324 |
| AspS9I | GGNCC | 2 cut(s) | 16, 340 |
| AsuHPI | GGTGA | 1 cut(s) | 586 |
| AvaI | CYCGRG | 1 cut(s) | 610 |
| AvaII | GGWCC | 2 cut(s) | 16, 340 |
| BbsI | GAAGAC | 2 cut(s) | 78, 495 |
| BbvCI | CCTCAGC | 1 cut(s) | 234 |
| BbvI | GCAGC | 2 cut(s) | 367, 629 |
| BccI | CCATC | 2 cut(s) | 106, 599 |
| BclI | TGATCA | 1 cut(s) | 364 |
| BcuI | ACTAGT | 2 cut(s) | 53, 422 |
| BfaI | CTAG | 4 cut(s) | 54, 179, 243, 423 |
| BfrI | CTTAAG | 2 cut(s) | 269, 455 |
| BisI | GCNGC | 2 cut(s) | 381, 618 |
| BlpI | GCTNAGC | 1 cut(s) | 330 |
| BlsI | GCNGC | 2 cut(s) | 382, 619 |
| BmcAI | AGTACT | 1 cut(s) | 83 |
| Bme18I | GGWCC | 2 cut(s) | 16, 340 |
| BmeT110I | CYCGRG | 1 cut(s) | 610 |
| BmgT120I | GGNCC | 2 cut(s) | 16, 340 |
| BmiI | GGNNCC | 1 cut(s) | 341 |
| BmsI | GCATC | 1 cut(s) | 36 |
| BpiI | GAAGAC | 2 cut(s) | 78, 495 |
| Bpu10I | CCTNAGC | 2 cut(s) | 234, 335 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 330 |
| BpuEI | CTTGAG | 2 cut(s) | 401, 560 |
| BsaBI | GATNNNNATC | 1 cut(s) | 470 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 183, 609 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 13, 349 |
| Bse1I | ACTGG | 2 cut(s) | 283, 565 |
| Bse8I | GATNNNNATC | 1 cut(s) | 470 |
| BseDI | CCNNGG | 3 cut(s) | 30, 183, 609 |
| BseGI | GGATG | 3 cut(s) | 40, 487, 676 |
| BseJI | GATNNNNATC | 1 cut(s) | 470 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 13, 349 |
| BseMII | CTCAG | 5 cut(s) | 33, 225, 344, 449, 537 |
| BseNI | ACTGG | 2 cut(s) | 283, 565 |
| BseXI | GCAGC | 2 cut(s) | 367, 629 |
| BsgI | GTGCAG | 2 cut(s) | 366, 668 |
| BsiHKCI | CYCGRG | 1 cut(s) | 610 |
| BslFI | GGGAC | 1 cut(s) | 353 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 13, 349 |
| BsmFI | GGGAC | 1 cut(s) | 353 |
| BsmI | GAATGC | 1 cut(s) | 388 |
| BsoBI | CYCGRG | 1 cut(s) | 610 |
| Bsp1407I | TGTACA | 1 cut(s) | 213 |
| Bsp143I | GATC | 2 cut(s) | 175, 364 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 330 |
| Bsp19I | CCATGG | 1 cut(s) | 183 |
| BspCNI | CTCAG | 5 cut(s) | 34, 226, 343, 448, 536 |
| BspHI | TCATGA | 1 cut(s) | 306 |
| BspLI | GGNNCC | 1 cut(s) | 341 |
| BspTI | CTTAAG | 2 cut(s) | 269, 455 |
| BsrGI | TGTACA | 1 cut(s) | 213 |
| BsrI | ACTGG | 2 cut(s) | 283, 565 |
| BssECI | CCNNGG | 3 cut(s) | 30, 183, 609 |
| BssMI | GATC | 2 cut(s) | 175, 364 |
| BssT1I | CCWWGG | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| BstAFI | CTTAAG | 2 cut(s) | 269, 455 |
| BstAUI | TGTACA | 1 cut(s) | 213 |
| BstC8I | GCNNGC | 1 cut(s) | 378 |
| BstDEI | CTNAG | 8 cut(s) | 42, 234, 330, 335, 435, 523, 546, 570 |
| BstDSI | CCRYGG | 1 cut(s) | 183 |
| BstF5I | GGATG | 3 cut(s) | 40, 487, 676 |
| BstKTI | GATC | 2 cut(s) | 178, 367 |
| BstMBI | GATC | 2 cut(s) | 175, 364 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 623 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstV1I | GCAGC | 2 cut(s) | 367, 629 |
| BstV2I | GAAGAC | 2 cut(s) | 78, 495 |
| BtgI | CCRYGG | 1 cut(s) | 183 |
| BtsCI | GGATG | 3 cut(s) | 40, 487, 676 |
| BtsI | GCAGTG | 1 cut(s) | 383 |
| BtsIMutI | CAGTG | 4 cut(s) | 276, 357, 383, 531 |
| Cac8I | GCNNGC | 1 cut(s) | 378 |
| CciI | TCATGA | 1 cut(s) | 306 |
| Cfr13I | GGNCC | 2 cut(s) | 16, 340 |
| Csp6I | GTAC | 3 cut(s) | 82, 214, 274 |
| CviAII | CATG | 6 cut(s) | 139, 184, 206, 307, 368, 377 |
| CviQI | GTAC | 3 cut(s) | 82, 214, 274 |
| DdeI | CTNAG | 8 cut(s) | 42, 234, 330, 335, 435, 523, 546, 570 |
| DpnI | GATC | 2 cut(s) | 177, 366 |
| DpnII | GATC | 2 cut(s) | 175, 364 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 139 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 139 |
| Eco130I | CCWWGG | 1 cut(s) | 183 |
| Eco47I | GGWCC | 2 cut(s) | 16, 340 |
| Eco88I | CYCGRG | 1 cut(s) | 610 |
| EcoO109I | RGGNCCY | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 1 cut(s) | 183 |
| ErhI | CCWWGG | 1 cut(s) | 183 |
| FaeI | CATG | 6 cut(s) | 142, 187, 209, 310, 371, 380 |
| FaqI | GGGAC | 1 cut(s) | 353 |
| FatI | CATG | 6 cut(s) | 138, 183, 205, 306, 367, 376 |
| FbaI | TGATCA | 1 cut(s) | 364 |
| FblI | GTMKAC | 1 cut(s) | 605 |
| Fnu4HI | GCNGC | 2 cut(s) | 381, 618 |
| FokI | GGATG | 3 cut(s) | 47, 494, 683 |
| Fsp4HI | GCNGC | 2 cut(s) | 381, 618 |
| FspBI | CTAG | 4 cut(s) | 54, 179, 243, 423 |
| GluI | GCNGC | 2 cut(s) | 381, 618 |
| Hin1II | CATG | 6 cut(s) | 142, 187, 209, 310, 371, 380 |
| HinfI | GANTC | 2 cut(s) | 310, 451 |
| HphI | GGTGA | 1 cut(s) | 586 |
| Hpy166II | GTNNAC | 3 cut(s) | 276, 529, 606 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 438 |
| Hpy188III | TCNNGA | 3 cut(s) | 307, 418, 612 |
| Hpy8I | GTNNAC | 3 cut(s) | 276, 529, 606 |
| HpyAV | CCTTC | 1 cut(s) | 433 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 4 cut(s) | 376, 383, 388, 685 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 623 |
| HpyF3I | CTNAG | 8 cut(s) | 42, 234, 330, 335, 435, 523, 546, 570 |
| Hsp92II | CATG | 6 cut(s) | 142, 187, 209, 310, 371, 380 |
| Ksp22I | TGATCA | 1 cut(s) | 364 |
| Kzo9I | GATC | 2 cut(s) | 175, 364 |
| LmnI | GCTCC | 2 cut(s) | 460, 614 |
| LpnPI | CCDG | 7 cut(s) | 20, 54, 186, 264, 478, 578, 673 |
| Lsp1109I | GCAGC | 2 cut(s) | 367, 629 |
| LweI | GCATC | 1 cut(s) | 36 |
| MaeI | CTAG | 4 cut(s) | 54, 179, 243, 423 |
| MaeIII | GTNAC | 2 cut(s) | 355, 425 |
| MalI | GATC | 2 cut(s) | 177, 366 |
| MboI | GATC | 2 cut(s) | 175, 364 |
| MboII | GAAGA | 5 cut(s) | 83, 179, 500, 562, 686 |
| MluCI | AATT | 2 cut(s) | 257, 641 |
| MlyI | GAGTC | 1 cut(s) | 460 |
| MnlI | CCTC | 7 cut(s) | 25, 149, 229, 353, 478, 532, 619 |
| MseI | TTAA | 7 cut(s) | 26, 261, 270, 324, 456, 645, 694 |
| MslI | CAYNNNNRTG | 1 cut(s) | 524 |
| MspCI | CTTAAG | 2 cut(s) | 269, 455 |
| Mva1269I | GAATGC | 1 cut(s) | 388 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 623 |
| NcoI | CCATGG | 1 cut(s) | 183 |
| NdeII | GATC | 2 cut(s) | 175, 364 |
| NlaIII | CATG | 6 cut(s) | 142, 187, 209, 310, 371, 380 |
| NlaIV | GGNNCC | 1 cut(s) | 341 |
| NmuCI | GTSAC | 1 cut(s) | 355 |
| NspI | RCATGY | 1 cut(s) | 380 |
| OliI | CACNNNNGTG | 1 cut(s) | 524 |
| PaeI | GCATGC | 1 cut(s) | 380 |
| PagI | TCATGA | 1 cut(s) | 306 |
| PctI | GAATGC | 1 cut(s) | 388 |
| PfeI | GAWTC | 1 cut(s) | 310 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 13 |
| PkrI | GCNGC | 2 cut(s) | 382, 619 |
| PleI | GAGTC | 1 cut(s) | 459 |
| PpsI | GAGTC | 1 cut(s) | 459 |
| PpuMI | RGGWCCY | 1 cut(s) | 340 |
| PshBI | ATTAAT | 1 cut(s) | 324 |
| Psp5II | RGGWCCY | 1 cut(s) | 340 |
| PspN4I | GGNNCC | 1 cut(s) | 341 |
| PspPI | GGNCC | 2 cut(s) | 16, 340 |
| PspPPI | RGGWCCY | 1 cut(s) | 340 |
| RsaI | GTAC | 3 cut(s) | 83, 215, 275 |
| RsaNI | GTAC | 3 cut(s) | 82, 214, 274 |
| RseI | CAYNNNNRTG | 1 cut(s) | 524 |
| SaqAI | TTAA | 7 cut(s) | 26, 261, 270, 324, 456, 645, 694 |
| SatI | GCNGC | 2 cut(s) | 381, 618 |
| Sau3AI | GATC | 2 cut(s) | 175, 364 |
| Sau96I | GGNCC | 2 cut(s) | 16, 340 |
| ScaI | AGTACT | 1 cut(s) | 83 |
| SchI | GAGTC | 1 cut(s) | 460 |
| SfaNI | GCATC | 1 cut(s) | 36 |
| SinI | GGWCC | 2 cut(s) | 16, 340 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 524 |
| SmlI | CTYRAG | 4 cut(s) | 269, 416, 455, 575 |
| SmoI | CTYRAG | 4 cut(s) | 269, 416, 455, 575 |
| SpeI | ACTAGT | 2 cut(s) | 53, 422 |
| SphI | GCATGC | 1 cut(s) | 380 |
| Sse9I | AATT | 2 cut(s) | 257, 641 |
| SspMI | CTAG | 4 cut(s) | 54, 179, 243, 423 |
| StyI | CCWWGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TasI | AATT | 2 cut(s) | 257, 641 |
| TatI | WGTACW | 3 cut(s) | 81, 213, 273 |
| TfiI | GAWTC | 1 cut(s) | 310 |
| Tru1I | TTAA | 7 cut(s) | 26, 261, 270, 324, 456, 645, 694 |
| Tru9I | TTAA | 7 cut(s) | 26, 261, 270, 324, 456, 645, 694 |
| TscAI | CASTG | 4 cut(s) | 283, 364, 390, 531 |
| TseFI | GTSAC | 1 cut(s) | 355 |
| TseI | GCWGC | 2 cut(s) | 380, 617 |
| Tsp45I | GTSAC | 1 cut(s) | 355 |
| TspDTI | ATGAA | 5 cut(s) | 17, 51, 84, 323, 687 |
| TspRI | CASTG | 4 cut(s) | 283, 364, 390, 531 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 13 |
| Vha464I | CTTAAG | 2 cut(s) | 269, 455 |
| VpaK11BI | GGWCC | 2 cut(s) | 16, 340 |
| VspI | ATTAAT | 1 cut(s) | 324 |
| XapI | RAATTY | 2 cut(s) | 257, 641 |
| XceI | RCATGY | 1 cut(s) | 380 |
| XmiI | GTMKAC | 1 cut(s) | 605 |
| XspI | CTAG | 4 cut(s) | 54, 179, 243, 423 |
| ZrmI | AGTACT | 1 cut(s) | 83 |