gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 39 - 148 | 8.8e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 146, 429 |
| AcuI | CTGAAG | 1 cut(s) | 371 |
| AfaI | GTAC | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 283 |
| AgsI | TTSAA | 2 cut(s) | 151, 251 |
| AjnI | CCWGG | 1 cut(s) | 318 |
| AluBI | AGCT | 4 cut(s) | 176, 202, 218, 268 |
| AluI | AGCT | 4 cut(s) | 176, 202, 218, 268 |
| Alw21I | GWGCWC | 2 cut(s) | 204, 312 |
| Alw44I | GTGCAC | 1 cut(s) | 308 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 85 |
| ApaLI | GTGCAC | 1 cut(s) | 308 |
| ApeKI | GCWGC | 1 cut(s) | 452 |
| ApoI | RAATTY | 2 cut(s) | 146, 429 |
| BaeGI | GKGCMC | 1 cut(s) | 312 |
| BanII | GRGCYC | 1 cut(s) | 204 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 344, 376 |
| Bbv12I | GWGCWC | 2 cut(s) | 204, 312 |
| BbvCI | CCTCAGC | 1 cut(s) | 5 |
| BbvI | GCAGC | 1 cut(s) | 439 |
| BccI | CCATC | 2 cut(s) | 42, 472 |
| BciT130I | CCWGG | 1 cut(s) | 320 |
| BfmI | CTRYAG | 1 cut(s) | 340 |
| BisI | GCNGC | 1 cut(s) | 453 |
| BlsI | GCNGC | 1 cut(s) | 454 |
| Bme1390I | CCNGG | 1 cut(s) | 320 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BmrFI | CCNGG | 1 cut(s) | 320 |
| BmsI | GCATC | 3 cut(s) | 234, 286, 464 |
| BpmI | CTGGAG | 1 cut(s) | 341 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5 |
| BpuEI | CTTGAG | 2 cut(s) | 188, 500 |
| BsaJI | CCNNGG | 1 cut(s) | 318 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 320 |
| BseDI | CCNNGG | 1 cut(s) | 318 |
| BseGI | GGATG | 1 cut(s) | 62 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseMII | CTCAG | 1 cut(s) | 77 |
| BseSI | GKGCMC | 1 cut(s) | 312 |
| BseXI | GCAGC | 1 cut(s) | 439 |
| BsiHKAI | GWGCWC | 2 cut(s) | 204, 312 |
| BslFI | GGGAC | 1 cut(s) | 310 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BsmFI | GGGAC | 1 cut(s) | 310 |
| Bsp1286I | GDGCHC | 2 cut(s) | 204, 312 |
| Bsp143I | GATC | 1 cut(s) | 531 |
| BspCNI | CTCAG | 1 cut(s) | 78 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BssECI | CCNNGG | 1 cut(s) | 318 |
| BssMI | GATC | 1 cut(s) | 531 |
| Bst2UI | CCWGG | 1 cut(s) | 320 |
| Bst4CI | ACNGT | 1 cut(s) | 95 |
| Bst6I | CTCTTC | 1 cut(s) | 347 |
| BstDEI | CTNAG | 2 cut(s) | 5, 86 |
| BstF5I | GGATG | 1 cut(s) | 62 |
| BstKTI | GATC | 1 cut(s) | 534 |
| BstMBI | GATC | 1 cut(s) | 531 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 173, 526 |
| BstNI | CCWGG | 1 cut(s) | 320 |
| BstSCI | CCNGG | 1 cut(s) | 318 |
| BstSFI | CTRYAG | 1 cut(s) | 340 |
| BstSLI | GKGCMC | 1 cut(s) | 312 |
| BstV1I | GCAGC | 1 cut(s) | 439 |
| BtsCI | GGATG | 1 cut(s) | 62 |
| BtsIMutI | CAGTG | 2 cut(s) | 83, 217 |
| CaiI | CAGNNNCTG | 1 cut(s) | 85 |
| Csp6I | GTAC | 1 cut(s) | 21 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 193, 228 |
| CviAII | CATG | 3 cut(s) | 127, 197, 241 |
| CviJI | RGCY | 7 cut(s) | 176, 202, 218, 268, 317, 452, 520 |
| CviKI_1 | RGCY | 7 cut(s) | 176, 202, 218, 268, 317, 452, 520 |
| CviQI | GTAC | 1 cut(s) | 21 |
| DdeI | CTNAG | 2 cut(s) | 5, 86 |
| DpnI | GATC | 1 cut(s) | 533 |
| DpnII | GATC | 1 cut(s) | 531 |
| Eam1104I | CTCTTC | 1 cut(s) | 347 |
| EarI | CTCTTC | 1 cut(s) | 347 |
| Ecl136II | GAGCTC | 1 cut(s) | 202 |
| Eco24I | GRGCYC | 1 cut(s) | 204 |
| Eco53kI | GAGCTC | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 1 cut(s) | 371 |
| EcoICRI | GAGCTC | 1 cut(s) | 202 |
| EcoRI | GAATTC | 1 cut(s) | 429 |
| EcoRII | CCWGG | 1 cut(s) | 318 |
| EcoT38I | GRGCYC | 1 cut(s) | 204 |
| FaeI | CATG | 3 cut(s) | 130, 200, 244 |
| FaiI | YATR | 8 cut(s) | 128, 198, 237, 242, 282, 284, 314, 461 |
| FaqI | GGGAC | 1 cut(s) | 310 |
| FatI | CATG | 3 cut(s) | 126, 196, 240 |
| Fnu4HI | GCNGC | 1 cut(s) | 453 |
| FokI | GGATG | 1 cut(s) | 49 |
| FriOI | GRGCYC | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 1 cut(s) | 453 |
| GluI | GCNGC | 1 cut(s) | 453 |
| GsuI | CTGGAG | 1 cut(s) | 341 |
| Hin1II | CATG | 3 cut(s) | 130, 200, 244 |
| HincII | GTYRAC | 2 cut(s) | 292, 337 |
| HindII | GTYRAC | 2 cut(s) | 292, 337 |
| HinfI | GANTC | 3 cut(s) | 288, 323, 472 |
| Hpy166II | GTNNAC | 3 cut(s) | 292, 310, 337 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 81, 351, 435, 477 |
| Hpy8I | GTNNAC | 3 cut(s) | 292, 310, 337 |
| HpyAV | CCTTC | 4 cut(s) | 164, 338, 430, 544 |
| HpyCH4III | ACNGT | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 4 cut(s) | 116, 244, 310, 455 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 173, 526 |
| HpyF3I | CTNAG | 2 cut(s) | 5, 86 |
| Hsp92II | CATG | 3 cut(s) | 130, 200, 244 |
| Kzo9I | GATC | 1 cut(s) | 531 |
| LmnI | GCTCC | 3 cut(s) | 154, 173, 215 |
| Lsp1109I | GCAGC | 1 cut(s) | 439 |
| LweI | GCATC | 3 cut(s) | 234, 286, 464 |
| MaeIII | GTNAC | 1 cut(s) | 356 |
| MalI | GATC | 1 cut(s) | 533 |
| MboI | GATC | 1 cut(s) | 531 |
| MboII | GAAGA | 2 cut(s) | 263, 364 |
| MfeI | CAATTG | 1 cut(s) | 117 |
| MhlI | GDGCHC | 2 cut(s) | 204, 312 |
| MluCI | AATT | 3 cut(s) | 117, 146, 429 |
| MlyI | GAGTC | 2 cut(s) | 297, 332 |
| MnlI | CCTC | 3 cut(s) | 442, 524, 553 |
| MseI | TTAA | 1 cut(s) | 414 |
| MspR9I | CCNGG | 1 cut(s) | 320 |
| MunI | CAATTG | 1 cut(s) | 117 |
| MvaI | CCWGG | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 173, 526 |
| NdeII | GATC | 1 cut(s) | 531 |
| NlaIII | CATG | 3 cut(s) | 130, 200, 244 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| PfeI | GAWTC | 1 cut(s) | 472 |
| PkrI | GCNGC | 1 cut(s) | 454 |
| PleI | GAGTC | 2 cut(s) | 296, 331 |
| PpsI | GAGTC | 2 cut(s) | 296, 331 |
| Psp124BI | GAGCTC | 1 cut(s) | 204 |
| Psp6I | CCWGG | 1 cut(s) | 318 |
| PspGI | CCWGG | 1 cut(s) | 318 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PstNI | CAGNNNCTG | 1 cut(s) | 85 |
| RsaI | GTAC | 1 cut(s) | 22 |
| RsaNI | GTAC | 1 cut(s) | 21 |
| SacI | GAGCTC | 1 cut(s) | 204 |
| SaqAI | TTAA | 1 cut(s) | 414 |
| SatI | GCNGC | 1 cut(s) | 453 |
| Sau3AI | GATC | 1 cut(s) | 531 |
| SchI | GAGTC | 2 cut(s) | 297, 332 |
| ScrFI | CCNGG | 1 cut(s) | 320 |
| SduI | GDGCHC | 2 cut(s) | 204, 312 |
| SetI | ASST | 8 cut(s) | 109, 178, 183, 204, 220, 270, 279, 516 |
| SfaNI | GCATC | 3 cut(s) | 234, 286, 464 |
| SfcI | CTRYAG | 1 cut(s) | 340 |
| SmlI | CTYRAG | 2 cut(s) | 203, 515 |
| SmoI | CTYRAG | 2 cut(s) | 203, 515 |
| Sse9I | AATT | 3 cut(s) | 117, 146, 429 |
| SstI | GAGCTC | 1 cut(s) | 204 |
| StyD4I | CCNGG | 1 cut(s) | 318 |
| TaaI | ACNGT | 1 cut(s) | 95 |
| TasI | AATT | 3 cut(s) | 117, 146, 429 |
| TatI | WGTACW | 1 cut(s) | 20 |
| TfiI | GAWTC | 1 cut(s) | 472 |
| Tru1I | TTAA | 1 cut(s) | 414 |
| Tru9I | TTAA | 1 cut(s) | 414 |
| TscAI | CASTG | 2 cut(s) | 90, 217 |
| TseI | GCWGC | 1 cut(s) | 452 |
| TspDTI | ATGAA | 2 cut(s) | 115, 408 |
| TspRI | CASTG | 2 cut(s) | 90, 217 |
| VneI | GTGCAC | 1 cut(s) | 308 |
| XapI | RAATTY | 2 cut(s) | 146, 429 |