Pfam:UBN2_2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 37 - 150 | 4.1e-07 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 104, 117 |
| AcsI | RAATTY | 1 cut(s) | 374 |
| AgsI | TTSAA | 4 cut(s) | 164, 271, 352, 452 |
| AjnI | CCWGG | 1 cut(s) | 444 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 38, 251, 283 |
| AluBI | AGCT | 2 cut(s) | 22, 67 |
| AluI | AGCT | 2 cut(s) | 22, 67 |
| Alw21I | GWGCWC | 2 cut(s) | 69, 102 |
| AlwI | GGATC | 2 cut(s) | 104, 117 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 248 |
| AoxI | GGCC | 1 cut(s) | 147 |
| ApeKI | GCWGC | 2 cut(s) | 508, 545 |
| ApoI | RAATTY | 1 cut(s) | 374 |
| AsuHPI | GGTGA | 1 cut(s) | 490 |
| AxyI | CCTNAGG | 1 cut(s) | 117 |
| BamHI | GGATCC | 1 cut(s) | 109 |
| BanII | GRGCYC | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 2 cut(s) | 69, 102 |
| BbvI | GCAGC | 2 cut(s) | 520, 557 |
| BciT130I | CCWGG | 1 cut(s) | 446 |
| BclI | TGATCA | 3 cut(s) | 91, 195, 201 |
| BisI | GCNGC | 2 cut(s) | 509, 546 |
| BlsI | GCNGC | 2 cut(s) | 510, 547 |
| Bme1390I | CCNGG | 1 cut(s) | 446 |
| BmiI | GGNNCC | 1 cut(s) | 111 |
| BmrFI | CCNGG | 1 cut(s) | 446 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaBI | GATNNNNATC | 1 cut(s) | 200 |
| BsaJI | CCNNGG | 1 cut(s) | 258 |
| Bse21I | CCTNAGG | 1 cut(s) | 117 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| Bse8I | GATNNNNATC | 1 cut(s) | 200 |
| BseBI | CCWGG | 1 cut(s) | 446 |
| BseDI | CCNNGG | 1 cut(s) | 258 |
| BseJI | GATNNNNATC | 1 cut(s) | 200 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseMII | CTCAG | 5 cut(s) | 108, 240, 273, 300, 312 |
| BseRI | GAGGAG | 1 cut(s) | 246 |
| BseXI | GCAGC | 2 cut(s) | 520, 557 |
| BshFI | GGCC | 1 cut(s) | 149 |
| BsiHKAI | GWGCWC | 2 cut(s) | 69, 102 |
| BslFI | GGGAC | 1 cut(s) | 429 |
| BsmFI | GGGAC | 1 cut(s) | 429 |
| BsmI | GAATGC | 1 cut(s) | 237 |
| BsnI | GGCC | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 2 cut(s) | 69, 102 |
| Bsp143I | GATC | 4 cut(s) | 91, 109, 195, 201 |
| BspANI | GGCC | 1 cut(s) | 149 |
| BspCNI | CTCAG | 5 cut(s) | 109, 241, 274, 301, 311 |
| BspHI | TCATGA | 4 cut(s) | 198, 324, 336, 381 |
| BspLI | GGNNCC | 1 cut(s) | 111 |
| BspPI | GGATC | 2 cut(s) | 104, 117 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BssECI | CCNNGG | 1 cut(s) | 258 |
| BssMI | GATC | 4 cut(s) | 91, 109, 195, 201 |
| BssT1I | CCWWGG | 1 cut(s) | 258 |
| Bst2UI | CCWGG | 1 cut(s) | 446 |
| Bst4CI | ACNGT | 1 cut(s) | 563 |
| BstC8I | GCNNGC | 1 cut(s) | 139 |
| BstDEI | CTNAG | 7 cut(s) | 117, 249, 282, 298, 309, 410, 493 |
| BstKTI | GATC | 4 cut(s) | 94, 112, 198, 204 |
| BstMBI | GATC | 4 cut(s) | 91, 109, 195, 201 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 542 |
| BstNI | CCWGG | 1 cut(s) | 446 |
| BstSCI | CCNGG | 1 cut(s) | 444 |
| BstV1I | GCAGC | 2 cut(s) | 520, 557 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| Bsu36I | CCTNAGG | 1 cut(s) | 117 |
| BsuRI | GGCC | 1 cut(s) | 149 |
| BtsI | GCAGTG | 1 cut(s) | 370 |
| BtsIMutI | CAGTG | 2 cut(s) | 370, 492 |
| Cac8I | GCNNGC | 1 cut(s) | 139 |
| CaiI | CAGNNNCTG | 1 cut(s) | 248 |
| CciI | TCATGA | 4 cut(s) | 198, 324, 336, 381 |
| CviAII | CATG | 5 cut(s) | 95, 199, 325, 337, 382 |
| CviJI | RGCY | 7 cut(s) | 12, 22, 33, 67, 149, 191, 308 |
| CviKI_1 | RGCY | 7 cut(s) | 12, 22, 33, 67, 149, 191, 308 |
| DdeI | CTNAG | 7 cut(s) | 117, 249, 282, 298, 309, 410, 493 |
| DpnI | GATC | 4 cut(s) | 93, 111, 197, 203 |
| DpnII | GATC | 4 cut(s) | 91, 109, 195, 201 |
| DraI | TTTAAA | 1 cut(s) | 292 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| Eco130I | CCWWGG | 1 cut(s) | 258 |
| Eco24I | GRGCYC | 1 cut(s) | 69 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco81I | CCTNAGG | 1 cut(s) | 117 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 374 |
| EcoRII | CCWGG | 1 cut(s) | 444 |
| EcoT14I | CCWWGG | 1 cut(s) | 258 |
| EcoT38I | GRGCYC | 1 cut(s) | 69 |
| ErhI | CCWWGG | 1 cut(s) | 258 |
| FaeI | CATG | 5 cut(s) | 98, 202, 328, 340, 385 |
| FaiI | YATR | 9 cut(s) | 90, 96, 200, 215, 255, 326, 338, 383, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 251, 283 |
| FaqI | GGGAC | 1 cut(s) | 429 |
| FatI | CATG | 5 cut(s) | 94, 198, 324, 336, 381 |
| FbaI | TGATCA | 3 cut(s) | 91, 195, 201 |
| Fnu4HI | GCNGC | 2 cut(s) | 509, 546 |
| FriOI | GRGCYC | 1 cut(s) | 69 |
| Fsp4HI | GCNGC | 2 cut(s) | 509, 546 |
| GluI | GCNGC | 2 cut(s) | 509, 546 |
| HaeIII | GGCC | 1 cut(s) | 149 |
| Hin1II | CATG | 5 cut(s) | 98, 202, 328, 340, 385 |
| HinfI | GANTC | 2 cut(s) | 245, 437 |
| HphI | GGTGA | 1 cut(s) | 490 |
| Hpy166II | GTNNAC | 1 cut(s) | 490 |
| Hpy188I | TCNGA | 4 cut(s) | 27, 58, 250, 301 |
| Hpy188III | TCNNGA | 7 cut(s) | 199, 205, 242, 325, 337, 382, 463 |
| Hpy8I | GTNNAC | 1 cut(s) | 490 |
| HpyCH4III | ACNGT | 1 cut(s) | 563 |
| HpyCH4V | TGCA | 3 cut(s) | 137, 508, 536 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 542 |
| HpyF3I | CTNAG | 7 cut(s) | 117, 249, 282, 298, 309, 410, 493 |
| Hsp92II | CATG | 5 cut(s) | 98, 202, 328, 340, 385 |
| Ksp22I | TGATCA | 3 cut(s) | 91, 195, 201 |
| Kzo9I | GATC | 4 cut(s) | 91, 109, 195, 201 |
| LpnPI | CCDG | 7 cut(s) | 127, 129, 231, 255, 387, 431, 458 |
| Lsp1109I | GCAGC | 2 cut(s) | 520, 557 |
| MaeIII | GTNAC | 1 cut(s) | 496 |
| MalI | GATC | 4 cut(s) | 93, 111, 197, 203 |
| MboI | GATC | 4 cut(s) | 91, 109, 195, 201 |
| MboII | GAAGA | 4 cut(s) | 259, 446, 464, 478 |
| MfeI | CAATTG | 1 cut(s) | 531 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 2 cut(s) | 69, 102 |
| MluCI | AATT | 4 cut(s) | 15, 122, 374, 531 |
| MmeI | TCCRAC | 1 cut(s) | 504 |
| MnlI | CCTC | 7 cut(s) | 100, 112, 139, 224, 227, 380, 561 |
| MseI | TTAA | 2 cut(s) | 291, 565 |
| MslI | CAYNNNNRTG | 2 cut(s) | 341, 503 |
| MspR9I | CCNGG | 1 cut(s) | 446 |
| MunI | CAATTG | 1 cut(s) | 531 |
| Mva1269I | GAATGC | 1 cut(s) | 237 |
| MvaI | CCWGG | 1 cut(s) | 446 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 542 |
| NdeII | GATC | 4 cut(s) | 91, 109, 195, 201 |
| NlaIII | CATG | 5 cut(s) | 98, 202, 328, 340, 385 |
| NlaIV | GGNNCC | 1 cut(s) | 111 |
| NmuCI | GTSAC | 1 cut(s) | 496 |
| PagI | TCATGA | 4 cut(s) | 198, 324, 336, 381 |
| PctI | GAATGC | 1 cut(s) | 237 |
| PfeI | GAWTC | 2 cut(s) | 245, 437 |
| PkrI | GCNGC | 2 cut(s) | 510, 547 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| Psp6I | CCWGG | 1 cut(s) | 444 |
| PspGI | CCWGG | 1 cut(s) | 444 |
| PspN4I | GGNNCC | 1 cut(s) | 111 |
| PstNI | CAGNNNCTG | 1 cut(s) | 248 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RseI | CAYNNNNRTG | 2 cut(s) | 341, 503 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SaqAI | TTAA | 2 cut(s) | 291, 565 |
| SatI | GCNGC | 2 cut(s) | 509, 546 |
| Sau3AI | GATC | 4 cut(s) | 91, 109, 195, 201 |
| ScrFI | CCNGG | 1 cut(s) | 446 |
| SduI | GDGCHC | 2 cut(s) | 69, 102 |
| SetI | ASST | 7 cut(s) | 24, 69, 118, 220, 391, 524, 553 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 341, 503 |
| SmlI | CTYRAG | 1 cut(s) | 101 |
| SmoI | CTYRAG | 1 cut(s) | 101 |
| Sse9I | AATT | 4 cut(s) | 15, 122, 374, 531 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| StyD4I | CCNGG | 1 cut(s) | 444 |
| StyI | CCWWGG | 1 cut(s) | 258 |
| TaaI | ACNGT | 1 cut(s) | 563 |
| TasI | AATT | 4 cut(s) | 15, 122, 374, 531 |
| TfiI | GAWTC | 2 cut(s) | 245, 437 |
| Tru1I | TTAA | 2 cut(s) | 291, 565 |
| Tru9I | TTAA | 2 cut(s) | 291, 565 |
| TscAI | CASTG | 2 cut(s) | 370, 492 |
| TseFI | GTSAC | 1 cut(s) | 496 |
| TseI | GCWGC | 2 cut(s) | 508, 545 |
| Tsp45I | GTSAC | 1 cut(s) | 496 |
| TspDTI | ATGAA | 4 cut(s) | 341, 367, 429, 471 |
| TspRI | CASTG | 2 cut(s) | 370, 492 |
| XapI | RAATTY | 1 cut(s) | 374 |