gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 317 |
| AclWI | GGATC | 3 cut(s) | 30, 54, 105 |
| AfaI | GTAC | 1 cut(s) | 73 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 262 |
| AflII | CTTAAG | 1 cut(s) | 37 |
| AgsI | TTSAA | 1 cut(s) | 287 |
| AluBI | AGCT | 2 cut(s) | 95, 197 |
| AluI | AGCT | 2 cut(s) | 95, 197 |
| Alw26I | GTCTC | 1 cut(s) | 149 |
| AlwI | GGATC | 3 cut(s) | 30, 54, 105 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| AspA2I | CCTAGG | 1 cut(s) | 10 |
| AspLEI | GCGC | 2 cut(s) | 280, 310 |
| AvrII | CCTAGG | 1 cut(s) | 10 |
| BbvI | GCAGC | 1 cut(s) | 218 |
| BccI | CCATC | 1 cut(s) | 256 |
| BcoDI | GTCTC | 1 cut(s) | 149 |
| BfaI | CTAG | 1 cut(s) | 11 |
| BfrI | CTTAAG | 1 cut(s) | 37 |
| BisI | GCNGC | 1 cut(s) | 207 |
| BlnI | CCTAGG | 1 cut(s) | 10 |
| BlsI | GCNGC | 1 cut(s) | 208 |
| BmcAI | AGTACT | 1 cut(s) | 73 |
| BmsI | GCATC | 1 cut(s) | 178 |
| Bpu10I | CCTNAGC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 1 cut(s) | 10 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 262 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 1 cut(s) | 10 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseMII | CTCAG | 2 cut(s) | 95, 323 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseXI | GCAGC | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BsmAI | GTCTC | 1 cut(s) | 149 |
| Bsp143I | GATC | 3 cut(s) | 22, 46, 110 |
| BspCNI | CTCAG | 2 cut(s) | 94, 324 |
| BspHI | TCATGA | 1 cut(s) | 135 |
| BspPI | GGATC | 3 cut(s) | 30, 54, 105 |
| BspTI | CTTAAG | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssECI | CCNNGG | 1 cut(s) | 10 |
| BssMI | GATC | 3 cut(s) | 22, 46, 110 |
| BssT1I | CCWWGG | 1 cut(s) | 10 |
| Bst4CI | ACNGT | 2 cut(s) | 160, 270 |
| BstAFI | CTTAAG | 1 cut(s) | 37 |
| BstDEI | CTNAG | 3 cut(s) | 81, 273, 332 |
| BstHHI | GCGC | 2 cut(s) | 280, 310 |
| BstKTI | GATC | 3 cut(s) | 25, 49, 113 |
| BstMAI | GTCTC | 1 cut(s) | 149 |
| BstMBI | GATC | 3 cut(s) | 22, 46, 110 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 203 |
| BstV1I | GCAGC | 1 cut(s) | 218 |
| BstX2I | RGATCY | 2 cut(s) | 22, 110 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 121 |
| BstYI | RGATCY | 2 cut(s) | 22, 110 |
| BtsIMutI | CAGTG | 1 cut(s) | 266 |
| CciI | TCATGA | 1 cut(s) | 135 |
| CfoI | GCGC | 2 cut(s) | 280, 310 |
| Csp6I | GTAC | 1 cut(s) | 72 |
| CviAII | CATG | 1 cut(s) | 136 |
| CviJI | RGCY | 5 cut(s) | 35, 52, 95, 197, 209 |
| CviKI_1 | RGCY | 5 cut(s) | 35, 52, 95, 197, 209 |
| CviQI | GTAC | 1 cut(s) | 72 |
| DdeI | CTNAG | 3 cut(s) | 81, 273, 332 |
| DpnI | GATC | 3 cut(s) | 24, 48, 112 |
| DpnII | GATC | 3 cut(s) | 22, 46, 110 |
| Eco130I | CCWWGG | 1 cut(s) | 10 |
| EcoT14I | CCWWGG | 1 cut(s) | 10 |
| ErhI | CCWWGG | 1 cut(s) | 10 |
| FaeI | CATG | 1 cut(s) | 139 |
| FaiI | YATR | 7 cut(s) | 20, 137, 147, 149, 212, 312, 317 |
| FatI | CATG | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 1 cut(s) | 207 |
| Fsp4HI | GCNGC | 1 cut(s) | 207 |
| FspBI | CTAG | 1 cut(s) | 11 |
| GlaI | GCGC | 2 cut(s) | 279, 309 |
| GluI | GCNGC | 1 cut(s) | 207 |
| HhaI | GCGC | 2 cut(s) | 280, 310 |
| Hin1II | CATG | 1 cut(s) | 139 |
| Hin6I | GCGC | 2 cut(s) | 278, 308 |
| HinP1I | GCGC | 2 cut(s) | 278, 308 |
| HindIII | AAGCTT | 1 cut(s) | 195 |
| HinfI | GANTC | 1 cut(s) | 230 |
| Hpy188I | TCNGA | 1 cut(s) | 84 |
| Hpy188III | TCNNGA | 3 cut(s) | 26, 136, 227 |
| HpyAV | CCTTC | 3 cut(s) | 79, 281, 287 |
| HpyCH4III | ACNGT | 2 cut(s) | 160, 270 |
| HpyCH4V | TGCA | 1 cut(s) | 176 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 203 |
| HpyF3I | CTNAG | 3 cut(s) | 81, 273, 332 |
| Hsp92II | CATG | 1 cut(s) | 139 |
| HspAI | GCGC | 2 cut(s) | 278, 308 |
| Kzo9I | GATC | 3 cut(s) | 22, 46, 110 |
| LpnPI | CCDG | 6 cut(s) | 66, 82, 103, 188, 212, 269 |
| Lsp1109I | GCAGC | 1 cut(s) | 218 |
| LweI | GCATC | 1 cut(s) | 178 |
| MaeI | CTAG | 1 cut(s) | 11 |
| MalI | GATC | 3 cut(s) | 24, 48, 112 |
| MboI | GATC | 3 cut(s) | 22, 46, 110 |
| MflI | RGATCY | 2 cut(s) | 22, 110 |
| MluCI | AATT | 1 cut(s) | 15 |
| MmeI | TCCRAC | 2 cut(s) | 89, 138 |
| MnlI | CCTC | 3 cut(s) | 37, 158, 244 |
| MseI | TTAA | 2 cut(s) | 38, 327 |
| MspCI | CTTAAG | 1 cut(s) | 37 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 203 |
| NdeII | GATC | 3 cut(s) | 22, 46, 110 |
| NlaIII | CATG | 1 cut(s) | 139 |
| PagI | TCATGA | 1 cut(s) | 135 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PkrI | GCNGC | 1 cut(s) | 208 |
| PsiI | TTATAA | 1 cut(s) | 317 |
| PsuI | RGATCY | 2 cut(s) | 22, 110 |
| RsaI | GTAC | 1 cut(s) | 73 |
| RsaNI | GTAC | 1 cut(s) | 72 |
| SaqAI | TTAA | 2 cut(s) | 38, 327 |
| SatI | GCNGC | 1 cut(s) | 207 |
| Sau3AI | GATC | 3 cut(s) | 22, 46, 110 |
| ScaI | AGTACT | 1 cut(s) | 73 |
| SetI | ASST | 6 cut(s) | 12, 97, 169, 199, 258, 333 |
| SfaNI | GCATC | 1 cut(s) | 178 |
| SmlI | CTYRAG | 1 cut(s) | 37 |
| SmoI | CTYRAG | 1 cut(s) | 37 |
| Sse9I | AATT | 1 cut(s) | 15 |
| SspMI | CTAG | 1 cut(s) | 11 |
| StyI | CCWWGG | 1 cut(s) | 10 |
| TaaI | ACNGT | 2 cut(s) | 160, 270 |
| TaqI | TCGA | 1 cut(s) | 163 |
| TasI | AATT | 1 cut(s) | 15 |
| TatI | WGTACW | 1 cut(s) | 71 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| Tru1I | TTAA | 2 cut(s) | 38, 327 |
| Tru9I | TTAA | 2 cut(s) | 38, 327 |
| TscAI | CASTG | 1 cut(s) | 273 |
| TseI | GCWGC | 1 cut(s) | 206 |
| TspDTI | ATGAA | 3 cut(s) | 124, 152, 164 |
| TspRI | CASTG | 1 cut(s) | 273 |
| Vha464I | CTTAAG | 1 cut(s) | 37 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 199 |
| XmaJI | CCTAGG | 1 cut(s) | 10 |
| XspI | CTAG | 1 cut(s) | 11 |
| ZrmI | AGTACT | 1 cut(s) | 73 |