gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC | PF00098 | 48 - 63 | 9.1e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 65 |
| AfaI | GTAC | 1 cut(s) | 187 |
| AgsI | TTSAA | 3 cut(s) | 44, 70, 142 |
| AluBI | AGCT | 2 cut(s) | 83, 116 |
| AluI | AGCT | 2 cut(s) | 83, 116 |
| ApeKI | GCWGC | 3 cut(s) | 16, 110, 113 |
| ApoI | RAATTY | 1 cut(s) | 65 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 65 |
| BbvI | GCAGC | 3 cut(s) | 28, 122, 125 |
| BccI | CCATC | 1 cut(s) | 103 |
| BfmI | CTRYAG | 2 cut(s) | 84, 108 |
| BisI | GCNGC | 3 cut(s) | 17, 111, 114 |
| BlsI | GCNGC | 3 cut(s) | 18, 112, 115 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseXI | GCAGC | 3 cut(s) | 28, 122, 125 |
| Bsp1407I | TGTACA | 1 cut(s) | 185 |
| BspMAI | CTGCAG | 1 cut(s) | 112 |
| BsrGI | TGTACA | 1 cut(s) | 185 |
| Bst4CI | ACNGT | 1 cut(s) | 185 |
| BstAUI | TGTACA | 1 cut(s) | 185 |
| BstDEI | CTNAG | 1 cut(s) | 75 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstSFI | CTRYAG | 2 cut(s) | 84, 108 |
| BstV1I | GCAGC | 3 cut(s) | 28, 122, 125 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| Csp6I | GTAC | 1 cut(s) | 186 |
| CviAII | CATG | 2 cut(s) | 172, 201 |
| CviQI | GTAC | 1 cut(s) | 186 |
| DdeI | CTNAG | 1 cut(s) | 75 |
| FaeI | CATG | 2 cut(s) | 175, 204 |
| FaiI | YATR | 4 cut(s) | 86, 173, 202, 225 |
| FatI | CATG | 2 cut(s) | 171, 200 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 111, 114 |
| FokI | GGATG | 1 cut(s) | 242 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 111, 114 |
| GluI | GCNGC | 3 cut(s) | 17, 111, 114 |
| Hin1II | CATG | 2 cut(s) | 175, 204 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 1 cut(s) | 220 |
| Hpy166II | GTNNAC | 1 cut(s) | 124 |
| Hpy188III | TCNNGA | 1 cut(s) | 99 |
| Hpy8I | GTNNAC | 1 cut(s) | 124 |
| HpyAV | CCTTC | 2 cut(s) | 30, 172 |
| HpyCH4III | ACNGT | 1 cut(s) | 185 |
| HpyCH4V | TGCA | 1 cut(s) | 110 |
| HpyF3I | CTNAG | 1 cut(s) | 75 |
| Hsp92II | CATG | 2 cut(s) | 175, 204 |
| LpnPI | CCDG | 2 cut(s) | 84, 174 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 122, 125 |
| MboII | GAAGA | 2 cut(s) | 16, 187 |
| MluCI | AATT | 2 cut(s) | 34, 65 |
| MnlI | CCTC | 2 cut(s) | 37, 226 |
| MroXI | GAANNNNTTC | 1 cut(s) | 65 |
| MseI | TTAA | 2 cut(s) | 135, 195 |
| MslI | CAYNNNNRTG | 1 cut(s) | 228 |
| NlaIII | CATG | 2 cut(s) | 175, 204 |
| PdmI | GAANNNNTTC | 1 cut(s) | 65 |
| PfeI | GAWTC | 1 cut(s) | 220 |
| PkrI | GCNGC | 3 cut(s) | 18, 112, 115 |
| PstI | CTGCAG | 1 cut(s) | 112 |
| RsaI | GTAC | 1 cut(s) | 187 |
| RsaNI | GTAC | 1 cut(s) | 186 |
| RseI | CAYNNNNRTG | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 135, 195 |
| SatI | GCNGC | 3 cut(s) | 17, 111, 114 |
| SetI | ASST | 3 cut(s) | 29, 85, 118 |
| SfcI | CTRYAG | 2 cut(s) | 84, 108 |
| SgeI | CNNG | 9 cut(s) | 82, 103, 111, 139, 154, 184, 201, 213, 218 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 228 |
| Sse9I | AATT | 2 cut(s) | 34, 65 |
| TaaI | ACNGT | 1 cut(s) | 185 |
| TasI | AATT | 2 cut(s) | 34, 65 |
| TatI | WGTACW | 1 cut(s) | 185 |
| TfiI | GAWTC | 1 cut(s) | 220 |
| Tru1I | TTAA | 2 cut(s) | 135, 195 |
| Tru9I | TTAA | 2 cut(s) | 135, 195 |
| TseI | GCWGC | 3 cut(s) | 16, 110, 113 |
| TspDTI | ATGAA | 3 cut(s) | 17, 188, 212 |
| XapI | RAATTY | 1 cut(s) | 65 |
| XmnI | GAANNNNTTC | 1 cut(s) | 65 |