gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 52 - 178 | 8.1e-13 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 105, 228 |
| AclWI | GGATC | 2 cut(s) | 165, 183 |
| AcsI | RAATTY | 1 cut(s) | 128 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AfaI | GTAC | 2 cut(s) | 205, 277 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 172, 490 |
| AgsI | TTSAA | 1 cut(s) | 403 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 72 |
| AluBI | AGCT | 7 cut(s) | 32, 38, 374, 383, 409, 454, 601 |
| AluI | AGCT | 7 cut(s) | 32, 38, 374, 383, 409, 454, 601 |
| Alw21I | GWGCWC | 1 cut(s) | 444 |
| Alw26I | GTCTC | 3 cut(s) | 46, 474, 572 |
| AlwI | GGATC | 2 cut(s) | 165, 183 |
| Ama87I | CYCGRG | 1 cut(s) | 314 |
| ApeKI | GCWGC | 4 cut(s) | 38, 243, 380, 451 |
| ApoI | RAATTY | 1 cut(s) | 128 |
| AsuC2I | CCSGG | 1 cut(s) | 421 |
| AvaI | CYCGRG | 1 cut(s) | 314 |
| AxyI | CCTNAGG | 1 cut(s) | 70 |
| BanII | GRGCYC | 1 cut(s) | 315 |
| Bbv12I | GWGCWC | 1 cut(s) | 444 |
| BbvI | GCAGC | 4 cut(s) | 25, 255, 392, 463 |
| BcnI | CCSGG | 1 cut(s) | 421 |
| BcoDI | GTCTC | 3 cut(s) | 46, 474, 572 |
| BfaI | CTAG | 8 cut(s) | 191, 335, 384, 393, 471, 485, 546, 607 |
| BfmI | CTRYAG | 3 cut(s) | 33, 39, 303 |
| BisI | GCNGC | 4 cut(s) | 39, 244, 381, 452 |
| BlsI | GCNGC | 4 cut(s) | 40, 245, 382, 453 |
| Bme1390I | CCNGG | 1 cut(s) | 421 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 72 |
| BmeT110I | CYCGRG | 1 cut(s) | 314 |
| BmiI | GGNNCC | 2 cut(s) | 312, 590 |
| BmrFI | CCNGG | 1 cut(s) | 421 |
| BmsI | GCATC | 2 cut(s) | 75, 154 |
| BpuMI | CCSGG | 1 cut(s) | 421 |
| BsaI | GGTCTC | 3 cut(s) | 46, 474, 572 |
| BsaJI | CCNNGG | 1 cut(s) | 324 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 302, 332 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 172, 490 |
| Bse21I | CCTNAGG | 1 cut(s) | 70 |
| BseDI | CCNNGG | 1 cut(s) | 324 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 172, 490 |
| BseMII | CTCAG | 2 cut(s) | 401, 545 |
| BseRI | GAGGAG | 1 cut(s) | 323 |
| BseXI | GCAGC | 4 cut(s) | 25, 255, 392, 463 |
| BsiHKAI | GWGCWC | 1 cut(s) | 444 |
| BsiHKCI | CYCGRG | 1 cut(s) | 314 |
| BsiSI | CCGG | 1 cut(s) | 420 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 172, 490 |
| BsmAI | GTCTC | 3 cut(s) | 46, 474, 572 |
| BsmI | GAATGC | 1 cut(s) | 22 |
| Bso31I | GGTCTC | 3 cut(s) | 46, 474, 572 |
| BsoBI | CYCGRG | 1 cut(s) | 314 |
| Bsp1286I | GDGCHC | 2 cut(s) | 315, 444 |
| Bsp143I | GATC | 2 cut(s) | 157, 175 |
| Bsp19I | CCATGG | 1 cut(s) | 324 |
| BspCNI | CTCAG | 2 cut(s) | 402, 546 |
| BspLI | GGNNCC | 2 cut(s) | 312, 590 |
| BspMAI | CTGCAG | 1 cut(s) | 43 |
| BspPI | GGATC | 2 cut(s) | 165, 183 |
| BspTNI | GGTCTC | 3 cut(s) | 46, 474, 572 |
| BssECI | CCNNGG | 1 cut(s) | 324 |
| BssMI | GATC | 2 cut(s) | 157, 175 |
| BssT1I | CCWWGG | 1 cut(s) | 324 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 448 |
| BstDEI | CTNAG | 5 cut(s) | 70, 410, 476, 554, 574 |
| BstDSI | CCRYGG | 1 cut(s) | 324 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 170 |
| BstKTI | GATC | 2 cut(s) | 160, 178 |
| BstMAI | GTCTC | 3 cut(s) | 46, 474, 572 |
| BstMBI | GATC | 2 cut(s) | 157, 175 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 38, 380, 448 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstSCI | CCNGG | 1 cut(s) | 419 |
| BstSFI | CTRYAG | 3 cut(s) | 33, 39, 303 |
| BstV1I | GCAGC | 4 cut(s) | 25, 255, 392, 463 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| Bsu36I | CCTNAGG | 1 cut(s) | 70 |
| BtgI | CCRYGG | 1 cut(s) | 324 |
| BtsI | GCAGTG | 1 cut(s) | 436 |
| BtsIMutI | CAGTG | 2 cut(s) | 297, 436 |
| Csp6I | GTAC | 2 cut(s) | 204, 276 |
| CviAII | CATG | 5 cut(s) | 142, 154, 325, 490, 518 |
| CviQI | GTAC | 2 cut(s) | 204, 276 |
| DdeI | CTNAG | 5 cut(s) | 70, 410, 476, 554, 574 |
| DpnI | GATC | 2 cut(s) | 159, 177 |
| DpnII | GATC | 2 cut(s) | 157, 175 |
| DriI | GACNNNNNGTC | 1 cut(s) | 72 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 72 |
| Eco130I | CCWWGG | 1 cut(s) | 324 |
| Eco24I | GRGCYC | 1 cut(s) | 315 |
| Eco31I | GGTCTC | 3 cut(s) | 46, 474, 572 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| Eco81I | CCTNAGG | 1 cut(s) | 70 |
| Eco88I | CYCGRG | 1 cut(s) | 314 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 170 |
| EcoT14I | CCWWGG | 1 cut(s) | 324 |
| EcoT22I | ATGCAT | 1 cut(s) | 147 |
| EcoT38I | GRGCYC | 1 cut(s) | 315 |
| ErhI | CCWWGG | 1 cut(s) | 324 |
| FaeI | CATG | 5 cut(s) | 145, 157, 328, 493, 521 |
| FatI | CATG | 5 cut(s) | 141, 153, 324, 489, 517 |
| Fnu4HI | GCNGC | 4 cut(s) | 39, 244, 381, 452 |
| FriOI | GRGCYC | 1 cut(s) | 315 |
| Fsp4HI | GCNGC | 4 cut(s) | 39, 244, 381, 452 |
| FspBI | CTAG | 8 cut(s) | 191, 335, 384, 393, 471, 485, 546, 607 |
| GluI | GCNGC | 4 cut(s) | 39, 244, 381, 452 |
| HapII | CCGG | 1 cut(s) | 420 |
| Hin1II | CATG | 5 cut(s) | 145, 157, 328, 493, 521 |
| HinfI | GANTC | 1 cut(s) | 194 |
| HpaII | CCGG | 1 cut(s) | 420 |
| Hpy166II | GTNNAC | 1 cut(s) | 276 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 199 |
| Hpy188III | TCNNGA | 2 cut(s) | 166, 335 |
| Hpy8I | GTNNAC | 1 cut(s) | 276 |
| HpyAV | CCTTC | 3 cut(s) | 192, 418, 430 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 5 cut(s) | 41, 145, 347, 451, 517 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 38, 380, 448 |
| HpyF3I | CTNAG | 5 cut(s) | 70, 410, 476, 554, 574 |
| Hsp92II | CATG | 5 cut(s) | 145, 157, 328, 493, 521 |
| Kzo9I | GATC | 2 cut(s) | 157, 175 |
| LmnI | GCTCC | 2 cut(s) | 310, 439 |
| LpnPI | CCDG | 8 cut(s) | 27, 179, 235, 270, 433, 494, 566, 605 |
| Lsp1109I | GCAGC | 4 cut(s) | 25, 255, 392, 463 |
| LweI | GCATC | 2 cut(s) | 75, 154 |
| MaeI | CTAG | 8 cut(s) | 191, 335, 384, 393, 471, 485, 546, 607 |
| MaeIII | GTNAC | 2 cut(s) | 64, 365 |
| MalI | GATC | 2 cut(s) | 159, 177 |
| MboI | GATC | 2 cut(s) | 157, 175 |
| MfeI | CAATTG | 1 cut(s) | 342 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MhlI | GDGCHC | 2 cut(s) | 315, 444 |
| MluCI | AATT | 4 cut(s) | 100, 128, 342, 456 |
| MnlI | CCTC | 7 cut(s) | 19, 66, 166, 205, 213, 301, 331 |
| Mph1103I | ATGCAT | 1 cut(s) | 147 |
| MseI | TTAA | 3 cut(s) | 90, 465, 498 |
| MspI | CCGG | 1 cut(s) | 420 |
| MspR9I | CCNGG | 1 cut(s) | 421 |
| MunI | CAATTG | 1 cut(s) | 342 |
| Mva1269I | GAATGC | 1 cut(s) | 22 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 38, 380, 448 |
| NciI | CCSGG | 1 cut(s) | 421 |
| NcoI | CCATGG | 1 cut(s) | 324 |
| NdeII | GATC | 2 cut(s) | 157, 175 |
| NlaIII | CATG | 5 cut(s) | 145, 157, 328, 493, 521 |
| NlaIV | GGNNCC | 2 cut(s) | 312, 590 |
| NmuCI | GTSAC | 2 cut(s) | 64, 365 |
| NsiI | ATGCAT | 1 cut(s) | 147 |
| NspI | RCATGY | 1 cut(s) | 521 |
| PctI | GAATGC | 1 cut(s) | 22 |
| PfeI | GAWTC | 1 cut(s) | 194 |
| PfoI | TCCNGGA | 1 cut(s) | 419 |
| PkrI | GCNGC | 4 cut(s) | 40, 245, 382, 453 |
| PsiI | TTATAA | 2 cut(s) | 105, 228 |
| PspN4I | GGNNCC | 2 cut(s) | 312, 590 |
| PstI | CTGCAG | 1 cut(s) | 43 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RsaI | GTAC | 2 cut(s) | 205, 277 |
| RsaNI | GTAC | 2 cut(s) | 204, 276 |
| SaqAI | TTAA | 3 cut(s) | 90, 465, 498 |
| SatI | GCNGC | 4 cut(s) | 39, 244, 381, 452 |
| Sau3AI | GATC | 2 cut(s) | 157, 175 |
| ScrFI | CCNGG | 1 cut(s) | 421 |
| SduI | GDGCHC | 2 cut(s) | 315, 444 |
| SfaNI | GCATC | 2 cut(s) | 75, 154 |
| SfcI | CTRYAG | 3 cut(s) | 33, 39, 303 |
| Sse9I | AATT | 4 cut(s) | 100, 128, 342, 456 |
| SspMI | CTAG | 8 cut(s) | 191, 335, 384, 393, 471, 485, 546, 607 |
| StyD4I | CCNGG | 1 cut(s) | 419 |
| StyI | CCWWGG | 1 cut(s) | 324 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TaqI | TCGA | 1 cut(s) | 126 |
| TasI | AATT | 4 cut(s) | 100, 128, 342, 456 |
| TatI | WGTACW | 1 cut(s) | 275 |
| TfiI | GAWTC | 1 cut(s) | 194 |
| Tru1I | TTAA | 3 cut(s) | 90, 465, 498 |
| Tru9I | TTAA | 3 cut(s) | 90, 465, 498 |
| TscAI | CASTG | 2 cut(s) | 297, 436 |
| TseFI | GTSAC | 2 cut(s) | 64, 365 |
| TseI | GCWGC | 4 cut(s) | 38, 243, 380, 451 |
| Tsp45I | GTSAC | 2 cut(s) | 64, 365 |
| TspDTI | ATGAA | 4 cut(s) | 29, 518, 519, 552 |
| TspRI | CASTG | 2 cut(s) | 297, 436 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 170 |
| XapI | RAATTY | 1 cut(s) | 128 |
| XbaI | TCTAGA | 1 cut(s) | 334 |
| XceI | RCATGY | 1 cut(s) | 521 |
| XspI | CTAG | 8 cut(s) | 191, 335, 384, 393, 471, 485, 546, 607 |
| Zsp2I | ATGCAT | 1 cut(s) | 147 |