gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 133 | 7.1e-17 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 242 |
| Acc65I | GGTACC | 1 cut(s) | 484 |
| AccB1I | GGYRCC | 1 cut(s) | 484 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 196 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 101, 161 |
| AcuI | CTGAAG | 1 cut(s) | 144 |
| AfaI | GTAC | 2 cut(s) | 140, 486 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 196, 480 |
| AgsI | TTSAA | 4 cut(s) | 151, 298, 460, 580 |
| AjnI | CCWGG | 1 cut(s) | 273 |
| AleI | CACNNNNGTG | 1 cut(s) | 413 |
| AluBI | AGCT | 5 cut(s) | 61, 95, 128, 352, 621 |
| AluI | AGCT | 5 cut(s) | 61, 95, 128, 352, 621 |
| Alw21I | GWGCWC | 3 cut(s) | 354, 403, 623 |
| Alw44I | GTGCAC | 1 cut(s) | 399 |
| AoxI | GGCC | 3 cut(s) | 3, 87, 471 |
| ApaLI | GTGCAC | 1 cut(s) | 399 |
| ApeKI | GCWGC | 3 cut(s) | 128, 503, 506 |
| ApoI | RAATTY | 2 cut(s) | 101, 161 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 455 |
| Asp718I | GGTACC | 1 cut(s) | 484 |
| AspS9I | GGNCC | 2 cut(s) | 21, 309 |
| AvaII | GGWCC | 2 cut(s) | 21, 309 |
| BaeGI | GKGCMC | 2 cut(s) | 403, 555 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 484 |
| BanII | GRGCYC | 2 cut(s) | 354, 623 |
| BbsI | GAAGAC | 1 cut(s) | 503 |
| Bbv12I | GWGCWC | 3 cut(s) | 354, 403, 623 |
| BbvI | GCAGC | 3 cut(s) | 115, 490, 493 |
| BccI | CCATC | 1 cut(s) | 418 |
| BciT130I | CCWGG | 1 cut(s) | 275 |
| BclI | TGATCA | 1 cut(s) | 591 |
| BfaI | CTAG | 2 cut(s) | 62, 480 |
| BglII | AGATCT | 1 cut(s) | 229 |
| BisI | GCNGC | 3 cut(s) | 129, 504, 507 |
| BlsI | GCNGC | 3 cut(s) | 130, 505, 508 |
| Bme1390I | CCNGG | 1 cut(s) | 275 |
| Bme18I | GGWCC | 2 cut(s) | 21, 309 |
| BmgT120I | GGNCC | 2 cut(s) | 21, 309 |
| BmiI | GGNNCC | 1 cut(s) | 486 |
| BmrFI | CCNGG | 1 cut(s) | 275 |
| BmrI | ACTGGG | 1 cut(s) | 558 |
| BmsI | GCATC | 2 cut(s) | 241, 331 |
| BmuI | ACTGGG | 1 cut(s) | 558 |
| BpiI | GAAGAC | 1 cut(s) | 503 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 605 |
| BpmI | CTGGAG | 1 cut(s) | 104 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 2 cut(s) | 273, 624 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 196, 480 |
| Bse1I | ACTGG | 1 cut(s) | 553 |
| Bse3DI | GCAATG | 1 cut(s) | 474 |
| Bse8I | GATNNNNATC | 1 cut(s) | 209 |
| BseBI | CCWGG | 1 cut(s) | 275 |
| BseDI | CCNNGG | 2 cut(s) | 273, 624 |
| BseGI | GGATG | 3 cut(s) | 346, 390, 594 |
| BseJI | GATNNNNATC | 1 cut(s) | 209 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 196, 480 |
| BseMI | GCAATG | 1 cut(s) | 474 |
| BseMII | CTCAG | 3 cut(s) | 238, 296, 483 |
| BseNI | ACTGG | 1 cut(s) | 553 |
| BseRI | GAGGAG | 2 cut(s) | 71, 629 |
| BseSI | GKGCMC | 2 cut(s) | 403, 555 |
| BseXI | GCAGC | 3 cut(s) | 115, 490, 493 |
| BshFI | GGCC | 3 cut(s) | 5, 89, 473 |
| BshNI | GGYRCC | 1 cut(s) | 484 |
| BsiHKAI | GWGCWC | 3 cut(s) | 354, 403, 623 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 196, 480 |
| BsnI | GGCC | 3 cut(s) | 5, 89, 473 |
| Bsp1286I | GDGCHC | 4 cut(s) | 354, 403, 555, 623 |
| Bsp1407I | TGTACA | 1 cut(s) | 138 |
| Bsp143I | GATC | 3 cut(s) | 154, 229, 591 |
| BspANI | GGCC | 3 cut(s) | 5, 89, 473 |
| BspCNI | CTCAG | 3 cut(s) | 237, 297, 484 |
| BspLI | GGNNCC | 1 cut(s) | 486 |
| BspT107I | GGYRCC | 1 cut(s) | 484 |
| BsrDI | GCAATG | 1 cut(s) | 474 |
| BsrGI | TGTACA | 1 cut(s) | 138 |
| BsrI | ACTGG | 1 cut(s) | 553 |
| BssECI | CCNNGG | 2 cut(s) | 273, 624 |
| BssMI | GATC | 3 cut(s) | 154, 229, 591 |
| BssT1I | CCWWGG | 1 cut(s) | 624 |
| Bst2UI | CCWGG | 1 cut(s) | 275 |
| Bst4CI | ACNGT | 1 cut(s) | 40 |
| BstAUI | TGTACA | 1 cut(s) | 138 |
| BstDEI | CTNAG | 3 cut(s) | 224, 305, 492 |
| BstF5I | GGATG | 3 cut(s) | 346, 390, 594 |
| BstKTI | GATC | 3 cut(s) | 157, 232, 594 |
| BstMBI | GATC | 3 cut(s) | 154, 229, 591 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 128 |
| BstNI | CCWGG | 1 cut(s) | 275 |
| BstNSI | RCATGY | 1 cut(s) | 71 |
| BstSCI | CCNGG | 1 cut(s) | 273 |
| BstSLI | GKGCMC | 2 cut(s) | 403, 555 |
| BstV1I | GCAGC | 3 cut(s) | 115, 490, 493 |
| BstV2I | GAAGAC | 1 cut(s) | 503 |
| BstX2I | RGATCY | 1 cut(s) | 229 |
| BstYI | RGATCY | 1 cut(s) | 229 |
| BsuRI | GGCC | 3 cut(s) | 5, 89, 473 |
| BtsCI | GGATG | 3 cut(s) | 346, 390, 594 |
| BtsI | GCAGTG | 3 cut(s) | 78, 408, 572 |
| BtsIMutI | CAGTG | 5 cut(s) | 78, 172, 408, 489, 572 |
| Cfr13I | GGNCC | 2 cut(s) | 21, 309 |
| Csp6I | GTAC | 2 cut(s) | 139, 485 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 148, 183 |
| CviAII | CATG | 5 cut(s) | 68, 238, 266, 556, 633 |
| CviQI | GTAC | 2 cut(s) | 139, 485 |
| DdeI | CTNAG | 3 cut(s) | 224, 305, 492 |
| DpnI | GATC | 3 cut(s) | 156, 231, 593 |
| DpnII | GATC | 3 cut(s) | 154, 229, 591 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 242 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 242 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Ecl136II | GAGCTC | 2 cut(s) | 352, 621 |
| Eco130I | CCWWGG | 1 cut(s) | 624 |
| Eco24I | GRGCYC | 2 cut(s) | 354, 623 |
| Eco47I | GGWCC | 2 cut(s) | 21, 309 |
| Eco53kI | GAGCTC | 2 cut(s) | 352, 621 |
| Eco57I | CTGAAG | 1 cut(s) | 144 |
| EcoICRI | GAGCTC | 2 cut(s) | 352, 621 |
| EcoRII | CCWGG | 1 cut(s) | 273 |
| EcoT14I | CCWWGG | 1 cut(s) | 624 |
| EcoT38I | GRGCYC | 2 cut(s) | 354, 623 |
| ErhI | CCWWGG | 1 cut(s) | 624 |
| FaeI | CATG | 5 cut(s) | 71, 241, 269, 559, 636 |
| FaiI | YATR | 7 cut(s) | 69, 92, 197, 239, 267, 557, 634 |
| FatI | CATG | 5 cut(s) | 67, 237, 265, 555, 632 |
| FbaI | TGATCA | 1 cut(s) | 591 |
| Fnu4HI | GCNGC | 3 cut(s) | 129, 504, 507 |
| FokI | GGATG | 3 cut(s) | 353, 397, 601 |
| FriOI | GRGCYC | 2 cut(s) | 354, 623 |
| Fsp4HI | GCNGC | 3 cut(s) | 129, 504, 507 |
| FspBI | CTAG | 2 cut(s) | 62, 480 |
| GluI | GCNGC | 3 cut(s) | 129, 504, 507 |
| GsuI | CTGGAG | 1 cut(s) | 104 |
| HaeIII | GGCC | 3 cut(s) | 5, 89, 473 |
| Hin1II | CATG | 5 cut(s) | 71, 241, 269, 559, 636 |
| HinfI | GANTC | 3 cut(s) | 278, 418, 445 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 6 cut(s) | 34, 185, 227, 306, 423, 450 |
| Hpy188III | TCNNGA | 3 cut(s) | 19, 83, 233 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| HpyAV | CCTTC | 2 cut(s) | 385, 566 |
| HpyCH4III | ACNGT | 1 cut(s) | 40 |
| HpyCH4V | TGCA | 4 cut(s) | 71, 131, 401, 509 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 128 |
| HpyF3I | CTNAG | 3 cut(s) | 224, 305, 492 |
| Hsp92II | CATG | 5 cut(s) | 71, 241, 269, 559, 636 |
| KpnI | GGTACC | 1 cut(s) | 488 |
| Ksp22I | TGATCA | 1 cut(s) | 591 |
| Kzo9I | GATC | 3 cut(s) | 154, 229, 591 |
| LmnI | GCTCC | 2 cut(s) | 58, 626 |
| LpnPI | CCDG | 8 cut(s) | 4, 68, 91, 218, 260, 287, 362, 534 |
| Lsp1109I | GCAGC | 3 cut(s) | 115, 490, 493 |
| LweI | GCATC | 2 cut(s) | 241, 331 |
| MaeI | CTAG | 2 cut(s) | 62, 480 |
| MalI | GATC | 3 cut(s) | 156, 231, 593 |
| MboI | GATC | 3 cut(s) | 154, 229, 591 |
| MboII | GAAGA | 2 cut(s) | 508, 571 |
| MflI | RGATCY | 1 cut(s) | 229 |
| MhlI | GDGCHC | 4 cut(s) | 354, 403, 555, 623 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 101, 161 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 6 cut(s) | 38, 49, 79, 300, 381, 607 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 1 cut(s) | 455 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 525, 606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 413 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 275 |
| MvaI | CCWGG | 1 cut(s) | 275 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 128 |
| NdeII | GATC | 3 cut(s) | 154, 229, 591 |
| NlaIII | CATG | 5 cut(s) | 71, 241, 269, 559, 636 |
| NlaIV | GGNNCC | 1 cut(s) | 486 |
| NspI | RCATGY | 1 cut(s) | 71 |
| OliI | CACNNNNGTG | 1 cut(s) | 413 |
| PdmI | GAANNNNTTC | 1 cut(s) | 455 |
| PfeI | GAWTC | 3 cut(s) | 278, 418, 445 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 196 |
| PkrI | GCNGC | 3 cut(s) | 130, 505, 508 |
| Psp124BI | GAGCTC | 2 cut(s) | 354, 623 |
| Psp6I | CCWGG | 1 cut(s) | 273 |
| PspGI | CCWGG | 1 cut(s) | 273 |
| PspN4I | GGNNCC | 1 cut(s) | 486 |
| PspPI | GGNCC | 2 cut(s) | 21, 309 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 131, 163 |
| PsuI | RGATCY | 1 cut(s) | 229 |
| RsaI | GTAC | 2 cut(s) | 140, 486 |
| RsaNI | GTAC | 2 cut(s) | 139, 485 |
| RseI | CAYNNNNRTG | 1 cut(s) | 413 |
| SacI | GAGCTC | 2 cut(s) | 354, 623 |
| SaqAI | TTAA | 2 cut(s) | 525, 606 |
| SatI | GCNGC | 3 cut(s) | 129, 504, 507 |
| Sau3AI | GATC | 3 cut(s) | 154, 229, 591 |
| Sau96I | GGNCC | 2 cut(s) | 21, 309 |
| ScrFI | CCNGG | 1 cut(s) | 275 |
| SduI | GDGCHC | 4 cut(s) | 354, 403, 555, 623 |
| SetI | ASST | 7 cut(s) | 63, 97, 130, 149, 317, 354, 623 |
| SfaNI | GCATC | 2 cut(s) | 241, 331 |
| SinI | GGWCC | 2 cut(s) | 21, 309 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 413 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 2 cut(s) | 101, 161 |
| SspMI | CTAG | 2 cut(s) | 62, 480 |
| SstI | GAGCTC | 2 cut(s) | 354, 623 |
| StyD4I | CCNGG | 1 cut(s) | 273 |
| StyI | CCWWGG | 1 cut(s) | 624 |
| TaaI | ACNGT | 1 cut(s) | 40 |
| TasI | AATT | 2 cut(s) | 101, 161 |
| TatI | WGTACW | 1 cut(s) | 138 |
| TfiI | GAWTC | 3 cut(s) | 278, 418, 445 |
| Tru1I | TTAA | 2 cut(s) | 525, 606 |
| Tru9I | TTAA | 2 cut(s) | 525, 606 |
| TscAI | CASTG | 5 cut(s) | 78, 172, 415, 496, 572 |
| TseI | GCWGC | 3 cut(s) | 128, 503, 506 |
| TspDTI | ATGAA | 3 cut(s) | 254, 387, 572 |
| TspRI | CASTG | 5 cut(s) | 78, 172, 415, 496, 572 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 196 |
| VneI | GTGCAC | 1 cut(s) | 399 |
| VpaK11BI | GGWCC | 2 cut(s) | 21, 309 |
| XapI | RAATTY | 2 cut(s) | 101, 161 |
| XceI | RCATGY | 1 cut(s) | 71 |
| XmnI | GAANNNNTTC | 1 cut(s) | 455 |
| XspI | CTAG | 2 cut(s) | 62, 480 |