gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 83 | 1.4e-10 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 57 |
| AcoI | YGGCCR | 1 cut(s) | 403 |
| AcsI | RAATTY | 3 cut(s) | 127, 314, 357 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AfaI | GTAC | 3 cut(s) | 14, 219, 424 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 24 |
| AflII | CTTAAG | 1 cut(s) | 410 |
| AgeI | ACCGGT | 1 cut(s) | 17 |
| AgsI | TTSAA | 5 cut(s) | 85, 149, 210, 433, 445 |
| AluBI | AGCT | 3 cut(s) | 68, 338, 437 |
| AluI | AGCT | 3 cut(s) | 68, 338, 437 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 347 |
| AoxI | GGCC | 1 cut(s) | 403 |
| ApeKI | GCWGC | 1 cut(s) | 65 |
| ApoI | RAATTY | 3 cut(s) | 127, 314, 357 |
| AsiGI | ACCGGT | 1 cut(s) | 17 |
| AsuC2I | CCSGG | 1 cut(s) | 402 |
| AsuHPI | GGTGA | 1 cut(s) | 263 |
| BbsI | GAAGAC | 1 cut(s) | 263 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BciVI | GTATCC | 1 cut(s) | 450 |
| BcnI | CCSGG | 1 cut(s) | 402 |
| BfaI | CTAG | 2 cut(s) | 141, 335 |
| BfmI | CTRYAG | 1 cut(s) | 391 |
| BfrI | CTTAAG | 1 cut(s) | 410 |
| BfuI | GTATCC | 1 cut(s) | 450 |
| BisI | GCNGC | 1 cut(s) | 66 |
| BlsI | GCNGC | 1 cut(s) | 67 |
| Bme1390I | CCNGG | 1 cut(s) | 402 |
| BmrFI | CCNGG | 1 cut(s) | 402 |
| BpiI | GAAGAC | 1 cut(s) | 263 |
| BpmI | CTGGAG | 1 cut(s) | 324 |
| BpuMI | CCSGG | 1 cut(s) | 402 |
| BsaBI | GATNNNNATC | 1 cut(s) | 110 |
| BsaWI | WCCGGW | 1 cut(s) | 17 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 24 |
| Bse118I | RCCGGY | 1 cut(s) | 17 |
| Bse1I | ACTGG | 1 cut(s) | 430 |
| Bse8I | GATNNNNATC | 1 cut(s) | 110 |
| BseGI | GGATG | 2 cut(s) | 42, 232 |
| BseJI | GATNNNNATC | 1 cut(s) | 110 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 24 |
| BseMII | CTCAG | 1 cut(s) | 339 |
| BseNI | ACTGG | 1 cut(s) | 430 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| BshFI | GGCC | 1 cut(s) | 405 |
| BshTI | ACCGGT | 1 cut(s) | 17 |
| BsiSI | CCGG | 2 cut(s) | 18, 402 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 24 |
| BsnI | GGCC | 1 cut(s) | 405 |
| BspANI | GGCC | 1 cut(s) | 405 |
| BspCNI | CTCAG | 1 cut(s) | 340 |
| BspMAI | CTGCAG | 1 cut(s) | 395 |
| BspTI | CTTAAG | 1 cut(s) | 410 |
| BsrFI | RCCGGY | 1 cut(s) | 17 |
| BsrI | ACTGG | 1 cut(s) | 430 |
| BssAI | RCCGGY | 1 cut(s) | 17 |
| Bst4CI | ACNGT | 2 cut(s) | 262, 422 |
| Bst6I | CTCTTC | 1 cut(s) | 462 |
| BstAFI | CTTAAG | 1 cut(s) | 410 |
| BstDEI | CTNAG | 5 cut(s) | 9, 169, 282, 348, 477 |
| BstF5I | GGATG | 2 cut(s) | 42, 232 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 390 |
| BstSCI | CCNGG | 1 cut(s) | 400 |
| BstSFI | CTRYAG | 1 cut(s) | 391 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BstV2I | GAAGAC | 1 cut(s) | 263 |
| BsuI | GTATCC | 1 cut(s) | 450 |
| BsuRI | GGCC | 1 cut(s) | 405 |
| BtsCI | GGATG | 2 cut(s) | 42, 232 |
| CaiI | CAGNNNCTG | 1 cut(s) | 347 |
| Cfr10I | RCCGGY | 1 cut(s) | 17 |
| Csp6I | GTAC | 3 cut(s) | 13, 218, 423 |
| CspAI | ACCGGT | 1 cut(s) | 17 |
| CviAII | CATG | 1 cut(s) | 119 |
| CviJI | RGCY | 7 cut(s) | 68, 80, 332, 338, 344, 405, 437 |
| CviKI_1 | RGCY | 7 cut(s) | 68, 80, 332, 338, 344, 405, 437 |
| CviQI | GTAC | 3 cut(s) | 13, 218, 423 |
| DdeI | CTNAG | 5 cut(s) | 9, 169, 282, 348, 477 |
| EaeI | YGGCCR | 1 cut(s) | 403 |
| Eam1104I | CTCTTC | 1 cut(s) | 462 |
| EarI | CTCTTC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| EcoRI | GAATTC | 1 cut(s) | 127 |
| FaeI | CATG | 1 cut(s) | 122 |
| FaiI | YATR | 3 cut(s) | 63, 120, 462 |
| FatI | CATG | 1 cut(s) | 118 |
| FblI | GTMKAC | 1 cut(s) | 57 |
| Fnu4HI | GCNGC | 1 cut(s) | 66 |
| FokI | GGATG | 2 cut(s) | 29, 239 |
| Fsp4HI | GCNGC | 1 cut(s) | 66 |
| FspBI | CTAG | 2 cut(s) | 141, 335 |
| GluI | GCNGC | 1 cut(s) | 66 |
| GsuI | CTGGAG | 1 cut(s) | 324 |
| HaeIII | GGCC | 1 cut(s) | 405 |
| HapII | CCGG | 2 cut(s) | 18, 402 |
| Hin1II | CATG | 1 cut(s) | 122 |
| HindIII | AAGCTT | 1 cut(s) | 435 |
| HinfI | GANTC | 2 cut(s) | 88, 350 |
| HpaII | CCGG | 2 cut(s) | 18, 402 |
| HphI | GGTGA | 1 cut(s) | 263 |
| Hpy166II | GTNNAC | 2 cut(s) | 15, 58 |
| Hpy188I | TCNGA | 5 cut(s) | 100, 126, 349, 375, 480 |
| Hpy188III | TCNNGA | 1 cut(s) | 46 |
| Hpy8I | GTNNAC | 2 cut(s) | 15, 58 |
| HpyAV | CCTTC | 1 cut(s) | 298 |
| HpyCH4III | ACNGT | 2 cut(s) | 262, 422 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 393 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 390 |
| HpyF3I | CTNAG | 5 cut(s) | 9, 169, 282, 348, 477 |
| Hsp92II | CATG | 1 cut(s) | 122 |
| LmnI | GCTCC | 1 cut(s) | 343 |
| LpnPI | CCDG | 8 cut(s) | 9, 31, 59, 105, 314, 354, 411, 415 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| MaeI | CTAG | 2 cut(s) | 141, 335 |
| MboII | GAAGA | 4 cut(s) | 97, 268, 322, 479 |
| MluCI | AATT | 6 cut(s) | 30, 127, 210, 234, 314, 357 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| MnlI | CCTC | 1 cut(s) | 355 |
| MseI | TTAA | 4 cut(s) | 237, 264, 318, 411 |
| MspCI | CTTAAG | 1 cut(s) | 410 |
| MspI | CCGG | 2 cut(s) | 18, 402 |
| MspR9I | CCNGG | 1 cut(s) | 402 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 390 |
| NciI | CCSGG | 1 cut(s) | 402 |
| NlaIII | CATG | 1 cut(s) | 122 |
| PfeI | GAWTC | 1 cut(s) | 88 |
| PinAI | ACCGGT | 1 cut(s) | 17 |
| PkrI | GCNGC | 1 cut(s) | 67 |
| PleI | GAGTC | 1 cut(s) | 358 |
| PpsI | GAGTC | 1 cut(s) | 358 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 28 |
| PstI | CTGCAG | 1 cut(s) | 395 |
| PstNI | CAGNNNCTG | 1 cut(s) | 347 |
| RsaI | GTAC | 3 cut(s) | 14, 219, 424 |
| RsaNI | GTAC | 3 cut(s) | 13, 218, 423 |
| SaqAI | TTAA | 4 cut(s) | 237, 264, 318, 411 |
| SatI | GCNGC | 1 cut(s) | 66 |
| SchI | GAGTC | 1 cut(s) | 359 |
| ScrFI | CCNGG | 1 cut(s) | 402 |
| SetI | ASST | 7 cut(s) | 70, 142, 283, 340, 370, 411, 439 |
| SfcI | CTRYAG | 1 cut(s) | 391 |
| SmlI | CTYRAG | 1 cut(s) | 410 |
| SmoI | CTYRAG | 1 cut(s) | 410 |
| Sse9I | AATT | 6 cut(s) | 30, 127, 210, 234, 314, 357 |
| SspMI | CTAG | 2 cut(s) | 141, 335 |
| StyD4I | CCNGG | 1 cut(s) | 400 |
| TaaI | ACNGT | 2 cut(s) | 262, 422 |
| TasI | AATT | 6 cut(s) | 30, 127, 210, 234, 314, 357 |
| TatI | WGTACW | 2 cut(s) | 12, 422 |
| TfiI | GAWTC | 1 cut(s) | 88 |
| Tru1I | TTAA | 4 cut(s) | 237, 264, 318, 411 |
| Tru9I | TTAA | 4 cut(s) | 237, 264, 318, 411 |
| TseI | GCWGC | 1 cut(s) | 65 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Vha464I | CTTAAG | 1 cut(s) | 410 |
| XapI | RAATTY | 3 cut(s) | 127, 314, 357 |
| XmiI | GTMKAC | 1 cut(s) | 57 |
| XspI | CTAG | 2 cut(s) | 141, 335 |