gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 15 - 124 | 4.8e-09 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 42 |
| AclWI | GGATC | 1 cut(s) | 94 |
| AcsI | RAATTY | 4 cut(s) | 74, 385, 497, 526 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AflII | CTTAAG | 1 cut(s) | 359 |
| AgsI | TTSAA | 3 cut(s) | 79, 251, 319 |
| AluBI | AGCT | 3 cut(s) | 143, 267, 287 |
| AluI | AGCT | 3 cut(s) | 143, 267, 287 |
| Alw26I | GTCTC | 2 cut(s) | 32, 360 |
| AlwI | GGATC | 1 cut(s) | 94 |
| AoxI | GGCC | 2 cut(s) | 67, 487 |
| ApoI | RAATTY | 4 cut(s) | 74, 385, 497, 526 |
| AspS9I | GGNCC | 2 cut(s) | 468, 488 |
| AsuNHI | GCTAGC | 1 cut(s) | 263 |
| AvaII | GGWCC | 1 cut(s) | 468 |
| BcoDI | GTCTC | 2 cut(s) | 32, 360 |
| BfaI | CTAG | 2 cut(s) | 192, 264 |
| BfrI | CTTAAG | 1 cut(s) | 359 |
| BlpI | GCTNAGC | 1 cut(s) | 30 |
| Bme18I | GGWCC | 1 cut(s) | 468 |
| BmgT120I | GGNCC | 2 cut(s) | 468, 488 |
| BmiI | GGNNCC | 2 cut(s) | 469, 490 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BmtI | GCTAGC | 1 cut(s) | 267 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 30 |
| BsaI | GGTCTC | 1 cut(s) | 32 |
| Bse1I | ACTGG | 1 cut(s) | 410 |
| BseGI | GGATG | 1 cut(s) | 177 |
| BseMII | CTCAG | 2 cut(s) | 21, 87 |
| BseNI | ACTGG | 1 cut(s) | 410 |
| BshFI | GGCC | 2 cut(s) | 69, 489 |
| BslFI | GGGAC | 3 cut(s) | 215, 326, 481 |
| BsmAI | GTCTC | 2 cut(s) | 32, 360 |
| BsmFI | GGGAC | 3 cut(s) | 215, 326, 481 |
| BsnI | GGCC | 2 cut(s) | 69, 489 |
| Bso31I | GGTCTC | 1 cut(s) | 32 |
| Bsp143I | GATC | 1 cut(s) | 99 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 30 |
| BspACI | CCGC | 1 cut(s) | 42 |
| BspANI | GGCC | 2 cut(s) | 69, 489 |
| BspCNI | CTCAG | 2 cut(s) | 22, 88 |
| BspLI | GGNNCC | 2 cut(s) | 469, 490 |
| BspOI | GCTAGC | 1 cut(s) | 267 |
| BspPI | GGATC | 1 cut(s) | 94 |
| BspTI | CTTAAG | 1 cut(s) | 359 |
| BspTNI | GGTCTC | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 410 |
| BssMI | GATC | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 1 cut(s) | 111 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstAFI | CTTAAG | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 1 cut(s) | 265 |
| BstDEI | CTNAG | 4 cut(s) | 30, 96, 132, 278 |
| BstF5I | GGATG | 1 cut(s) | 177 |
| BstKTI | GATC | 1 cut(s) | 102 |
| BstMAI | GTCTC | 2 cut(s) | 32, 360 |
| BstMBI | GATC | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 293, 543 |
| BstX2I | RGATCY | 1 cut(s) | 99 |
| BstYI | RGATCY | 1 cut(s) | 99 |
| BsuRI | GGCC | 2 cut(s) | 69, 489 |
| BtsCI | GGATG | 1 cut(s) | 177 |
| BtsI | GCAGTG | 2 cut(s) | 314, 483 |
| BtsIMutI | CAGTG | 2 cut(s) | 314, 483 |
| Cac8I | GCNNGC | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 2 cut(s) | 468, 488 |
| CviJI | RGCY | 7 cut(s) | 69, 95, 143, 267, 287, 425, 489 |
| CviKI_1 | RGCY | 7 cut(s) | 69, 95, 143, 267, 287, 425, 489 |
| DdeI | CTNAG | 4 cut(s) | 30, 96, 132, 278 |
| DpnI | GATC | 1 cut(s) | 101 |
| DpnII | GATC | 1 cut(s) | 99 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Eco31I | GGTCTC | 1 cut(s) | 32 |
| Eco47I | GGWCC | 1 cut(s) | 468 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| FaiI | YATR | 6 cut(s) | 54, 56, 138, 170, 240, 561 |
| FaqI | GGGAC | 3 cut(s) | 215, 326, 481 |
| FokI | GGATG | 1 cut(s) | 164 |
| FspBI | CTAG | 2 cut(s) | 192, 264 |
| HaeIII | GGCC | 2 cut(s) | 69, 489 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HindIII | AAGCTT | 1 cut(s) | 141 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 200, 221, 522, 565 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 2 cut(s) | 403, 548 |
| HpyCH4III | ACNGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 4 cut(s) | 332, 343, 449, 546 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 293, 543 |
| HpyF3I | CTNAG | 4 cut(s) | 30, 96, 132, 278 |
| Kzo9I | GATC | 1 cut(s) | 99 |
| LmnI | GCTCC | 1 cut(s) | 304 |
| LpnPI | CCDG | 7 cut(s) | 132, 194, 234, 273, 391, 414, 507 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 2 cut(s) | 192, 264 |
| MalI | GATC | 1 cut(s) | 101 |
| MboI | GATC | 1 cut(s) | 99 |
| MboII | GAAGA | 1 cut(s) | 359 |
| MflI | RGATCY | 1 cut(s) | 99 |
| MluCI | AATT | 6 cut(s) | 74, 327, 385, 497, 526, 571 |
| MnlI | CCTC | 4 cut(s) | 9, 285, 343, 448 |
| MseI | TTAA | 5 cut(s) | 72, 206, 326, 360, 531 |
| MspCI | CTTAAG | 1 cut(s) | 359 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 293, 543 |
| NdeII | GATC | 1 cut(s) | 99 |
| NheI | GCTAGC | 1 cut(s) | 263 |
| NlaIV | GGNNCC | 2 cut(s) | 469, 490 |
| PspN4I | GGNNCC | 2 cut(s) | 469, 490 |
| PspPI | GGNCC | 2 cut(s) | 468, 488 |
| PsuI | RGATCY | 1 cut(s) | 99 |
| SaqAI | TTAA | 5 cut(s) | 72, 206, 326, 360, 531 |
| Sau3AI | GATC | 1 cut(s) | 99 |
| Sau96I | GGNCC | 2 cut(s) | 468, 488 |
| SetI | ASST | 4 cut(s) | 108, 145, 269, 289 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SinI | GGWCC | 1 cut(s) | 468 |
| SmlI | CTYRAG | 1 cut(s) | 359 |
| SmoI | CTYRAG | 1 cut(s) | 359 |
| Sse9I | AATT | 6 cut(s) | 74, 327, 385, 497, 526, 571 |
| SsiI | CCGC | 1 cut(s) | 42 |
| SspMI | CTAG | 2 cut(s) | 192, 264 |
| TaaI | ACNGT | 1 cut(s) | 111 |
| TasI | AATT | 6 cut(s) | 74, 327, 385, 497, 526, 571 |
| Tru1I | TTAA | 5 cut(s) | 72, 206, 326, 360, 531 |
| Tru9I | TTAA | 5 cut(s) | 72, 206, 326, 360, 531 |
| TscAI | CASTG | 2 cut(s) | 314, 483 |
| TspDTI | ATGAA | 4 cut(s) | 102, 153, 220, 227 |
| TspRI | CASTG | 2 cut(s) | 314, 483 |
| Vha464I | CTTAAG | 1 cut(s) | 359 |
| VpaK11BI | GGWCC | 1 cut(s) | 468 |
| XapI | RAATTY | 4 cut(s) | 74, 385, 497, 526 |
| XspI | CTAG | 2 cut(s) | 192, 264 |