gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 51 - 204 | 3.7e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 285 |
| AclWI | GGATC | 1 cut(s) | 730 |
| AcsI | RAATTY | 2 cut(s) | 314, 691 |
| AcuI | CTGAAG | 1 cut(s) | 159 |
| AgsI | TTSAA | 5 cut(s) | 47, 176, 412, 688, 769 |
| AhlI | ACTAGT | 1 cut(s) | 517 |
| AluBI | AGCT | 6 cut(s) | 98, 188, 335, 436, 485, 749 |
| AluI | AGCT | 6 cut(s) | 98, 188, 335, 436, 485, 749 |
| AlwI | GGATC | 1 cut(s) | 730 |
| ApeKI | GCWGC | 1 cut(s) | 299 |
| ApoI | RAATTY | 2 cut(s) | 314, 691 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 638, 670 |
| AseI | ATTAAT | 1 cut(s) | 558 |
| AsuHPI | GGTGA | 1 cut(s) | 652 |
| BbvI | GCAGC | 1 cut(s) | 311 |
| BccI | CCATC | 1 cut(s) | 374 |
| BcuI | ACTAGT | 1 cut(s) | 517 |
| BfaI | CTAG | 5 cut(s) | 101, 162, 446, 473, 518 |
| BfmI | CTRYAG | 1 cut(s) | 456 |
| BisI | GCNGC | 2 cut(s) | 285, 300 |
| BlsI | GCNGC | 2 cut(s) | 286, 301 |
| BmsI | GCATC | 1 cut(s) | 805 |
| BpmI | CTGGAG | 1 cut(s) | 738 |
| BsaJI | CCNNGG | 1 cut(s) | 467 |
| Bse1I | ACTGG | 1 cut(s) | 61 |
| Bse3DI | GCAATG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 1 cut(s) | 467 |
| BseGI | GGATG | 1 cut(s) | 558 |
| BseMI | GCAATG | 1 cut(s) | 246 |
| BseMII | CTCAG | 3 cut(s) | 142, 518, 551 |
| BseNI | ACTGG | 1 cut(s) | 61 |
| BseRI | GAGGAG | 2 cut(s) | 273, 492 |
| BseXI | GCAGC | 1 cut(s) | 311 |
| Bsp143I | GATC | 1 cut(s) | 722 |
| Bsp19I | CCATGG | 1 cut(s) | 467 |
| BspACI | CCGC | 1 cut(s) | 285 |
| BspCNI | CTCAG | 3 cut(s) | 141, 517, 550 |
| BspHI | TCATGA | 1 cut(s) | 351 |
| BspPI | GGATC | 1 cut(s) | 730 |
| BsrDI | GCAATG | 1 cut(s) | 246 |
| BsrI | ACTGG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 467 |
| BssMI | GATC | 1 cut(s) | 722 |
| BssT1I | CCWWGG | 1 cut(s) | 467 |
| Bst4CI | ACNGT | 3 cut(s) | 253, 631, 812 |
| Bst6I | CTCTTC | 1 cut(s) | 582 |
| BstDEI | CTNAG | 4 cut(s) | 128, 504, 537, 699 |
| BstDSI | CCRYGG | 1 cut(s) | 467 |
| BstF5I | GGATG | 1 cut(s) | 558 |
| BstKTI | GATC | 1 cut(s) | 725 |
| BstMBI | GATC | 1 cut(s) | 722 |
| BstSFI | CTRYAG | 1 cut(s) | 456 |
| BstV1I | GCAGC | 1 cut(s) | 311 |
| BstX2I | RGATCY | 1 cut(s) | 722 |
| BstYI | RGATCY | 1 cut(s) | 722 |
| BtgI | CCRYGG | 1 cut(s) | 467 |
| BtsCI | GGATG | 1 cut(s) | 558 |
| BtsIMutI | CAGTG | 1 cut(s) | 636 |
| CciI | TCATGA | 1 cut(s) | 351 |
| CviAII | CATG | 3 cut(s) | 352, 468, 595 |
| DdeI | CTNAG | 4 cut(s) | 128, 504, 537, 699 |
| DpnI | GATC | 1 cut(s) | 724 |
| DpnII | GATC | 1 cut(s) | 722 |
| Eam1104I | CTCTTC | 1 cut(s) | 582 |
| EarI | CTCTTC | 1 cut(s) | 582 |
| Eco130I | CCWWGG | 1 cut(s) | 467 |
| Eco57I | CTGAAG | 1 cut(s) | 159 |
| EcoT14I | CCWWGG | 1 cut(s) | 467 |
| ErhI | CCWWGG | 1 cut(s) | 467 |
| FaeI | CATG | 3 cut(s) | 355, 471, 598 |
| FatI | CATG | 3 cut(s) | 351, 467, 594 |
| Fnu4HI | GCNGC | 2 cut(s) | 285, 300 |
| FokI | GGATG | 1 cut(s) | 565 |
| Fsp4HI | GCNGC | 2 cut(s) | 285, 300 |
| FspBI | CTAG | 5 cut(s) | 101, 162, 446, 473, 518 |
| GluI | GCNGC | 2 cut(s) | 285, 300 |
| GsuI | CTGGAG | 1 cut(s) | 738 |
| Hin1II | CATG | 3 cut(s) | 355, 471, 598 |
| HincII | GTYRAC | 1 cut(s) | 515 |
| HindII | GTYRAC | 1 cut(s) | 515 |
| HindIII | AAGCTT | 1 cut(s) | 747 |
| HinfI | GANTC | 2 cut(s) | 28, 265 |
| HphI | GGTGA | 1 cut(s) | 652 |
| Hpy166II | GTNNAC | 2 cut(s) | 515, 634 |
| Hpy188I | TCNGA | 3 cut(s) | 33, 131, 540 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 352, 446 |
| Hpy8I | GTNNAC | 2 cut(s) | 515, 634 |
| HpyAV | CCTTC | 1 cut(s) | 598 |
| HpyCH4III | ACNGT | 3 cut(s) | 253, 631, 812 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 219, 232, 428, 583 |
| HpyF3I | CTNAG | 4 cut(s) | 128, 504, 537, 699 |
| Hsp92II | CATG | 3 cut(s) | 355, 471, 598 |
| Kzo9I | GATC | 1 cut(s) | 722 |
| LmnI | GCTCC | 1 cut(s) | 400 |
| LpnPI | CCDG | 5 cut(s) | 42, 150, 282, 468, 702 |
| Lsp1109I | GCAGC | 1 cut(s) | 311 |
| LweI | GCATC | 1 cut(s) | 805 |
| MaeI | CTAG | 5 cut(s) | 101, 162, 446, 473, 518 |
| MaeIII | GTNAC | 5 cut(s) | 520, 622, 640, 782, 812 |
| MalI | GATC | 1 cut(s) | 724 |
| MboI | GATC | 1 cut(s) | 722 |
| MboII | GAAGA | 6 cut(s) | 95, 320, 424, 483, 599, 702 |
| MflI | RGATCY | 1 cut(s) | 722 |
| MluCI | AATT | 5 cut(s) | 11, 42, 150, 314, 691 |
| MlyI | GAGTC | 1 cut(s) | 37 |
| MmeI | TCCRAC | 1 cut(s) | 777 |
| MnlI | CCTC | 8 cut(s) | 228, 251, 254, 510, 513, 583, 713, 798 |
| MseI | TTAA | 5 cut(s) | 69, 318, 558, 600, 672 |
| MslI | CAYNNNNRTG | 2 cut(s) | 466, 578 |
| NcoI | CCATGG | 1 cut(s) | 467 |
| NdeII | GATC | 1 cut(s) | 722 |
| NlaIII | CATG | 3 cut(s) | 355, 471, 598 |
| NmuCI | GTSAC | 4 cut(s) | 520, 640, 782, 812 |
| PagI | TCATGA | 1 cut(s) | 351 |
| PfeI | GAWTC | 1 cut(s) | 265 |
| PflFI | GACNNNGTC | 1 cut(s) | 788 |
| PkrI | GCNGC | 2 cut(s) | 286, 301 |
| PleI | GAGTC | 1 cut(s) | 36 |
| PpsI | GAGTC | 1 cut(s) | 36 |
| PshBI | ATTAAT | 1 cut(s) | 558 |
| PsuI | RGATCY | 1 cut(s) | 722 |
| PsyI | GACNNNGTC | 1 cut(s) | 788 |
| RseI | CAYNNNNRTG | 2 cut(s) | 466, 578 |
| SaqAI | TTAA | 5 cut(s) | 69, 318, 558, 600, 672 |
| SatI | GCNGC | 2 cut(s) | 285, 300 |
| Sau3AI | GATC | 1 cut(s) | 722 |
| SchI | GAGTC | 1 cut(s) | 37 |
| SetI | ASST | 7 cut(s) | 100, 190, 337, 438, 487, 530, 751 |
| SfaNI | GCATC | 1 cut(s) | 805 |
| SfcI | CTRYAG | 1 cut(s) | 456 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 466, 578 |
| SpeI | ACTAGT | 1 cut(s) | 517 |
| Sse9I | AATT | 5 cut(s) | 11, 42, 150, 314, 691 |
| SsiI | CCGC | 1 cut(s) | 285 |
| SspMI | CTAG | 5 cut(s) | 101, 162, 446, 473, 518 |
| StyI | CCWWGG | 1 cut(s) | 467 |
| TaaI | ACNGT | 3 cut(s) | 253, 631, 812 |
| TaqI | TCGA | 1 cut(s) | 365 |
| TasI | AATT | 5 cut(s) | 11, 42, 150, 314, 691 |
| TauI | GCSGC | 1 cut(s) | 287 |
| TfiI | GAWTC | 1 cut(s) | 265 |
| Tru1I | TTAA | 5 cut(s) | 69, 318, 558, 600, 672 |
| Tru9I | TTAA | 5 cut(s) | 69, 318, 558, 600, 672 |
| TscAI | CASTG | 1 cut(s) | 636 |
| TseFI | GTSAC | 4 cut(s) | 520, 640, 782, 812 |
| TseI | GCWGC | 1 cut(s) | 299 |
| Tsp45I | GTSAC | 4 cut(s) | 520, 640, 782, 812 |
| TspDTI | ATGAA | 4 cut(s) | 368, 386, 576, 696 |
| TspRI | CASTG | 1 cut(s) | 636 |
| Tth111I | GACNNNGTC | 1 cut(s) | 788 |
| VspI | ATTAAT | 1 cut(s) | 558 |
| XapI | RAATTY | 2 cut(s) | 314, 691 |
| XbaI | TCTAGA | 1 cut(s) | 445 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 634 |
| XspI | CTAG | 5 cut(s) | 101, 162, 446, 473, 518 |