Rmu_sc0001347.1_g000005

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001347.1
OG0000077
Physical Location & Seq
Forward (+)
13485 .. 17552
4068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001347.1_g000005.1.cds

Sequence Viewer

Length: 729 bp
atgtctgcctcgatgaatgctcttggacagctgtggctgcagggattgaaagtgtcaatccaggtgattactcctacggagactaggaatgcttctggacctcttgttgtgaccttaggtcaagttgagatgcttaatgggtggaattataagaagtggagaaaccaggtcgaattttatctgtccatgcatcaaaacatggatctttgcctgatagaggatcagccttctgaactagattctgaaagtaccaatgtggataggaggcattacaaggagtggtatagcagcaacaagaaagccaaaaatgtgattaggtgtactatgtcagacacagtgaaagggtctatagtggagcccgagttagccatggattttctagaagaaattgcagacaaatatagagagagtgacaaggctgaggcagctaggttgtctaggaagtttaatgaactgagtttctctggtaagggcagtgactctaatcgtagcacagaagtggatcagaggtggtgttttttgccagcttggatgaggctcgcttcactgatctcggccggctgcattgggagcttaagtaaggtgtgcgcggcttgggtcgtcggcagtctctgcttggagtttctacctgttctgatggtacgtcctgctatggctgtaagaggccgatgggaagtccccagtcctatctcggcgagcattggtaggaggcgggagttaaccaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

242

Amino Acids

27.33

Weight (kDa)

8.5

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccII CGCG 1 cut(s) 590
AciI CCGC 2 cut(s) 590, 712
AclWI GGATC 3 cut(s) 210, 228, 510
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 3 cut(s) 250, 322, 642
AfiI CCNNNNNNNGG 1 cut(s) 217
AflII CTTAAG 1 cut(s) 574
AgsI TTSAA 1 cut(s) 49
AhdI GACNNNNNGTC 1 cut(s) 117
AjnI CCWGG 2 cut(s) 60, 165
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 4 cut(s) 31, 428, 527, 573
AluI AGCT 4 cut(s) 31, 428, 527, 573
Alw26I GTCTC 2 cut(s) 74, 614
AlwI GGATC 3 cut(s) 210, 228, 510
AlwNI CAGNNNCTG 1 cut(s) 612
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 2 cut(s) 555, 664
ApeKI GCWGC 4 cut(s) 37, 288, 425, 561
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 115
BanII GRGCYC 1 cut(s) 360
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 24, 300, 437, 548
BccI CCATC 2 cut(s) 631, 663
BciT130I CCWGG 2 cut(s) 62, 167
BcoDI GTCTC 2 cut(s) 74, 614
BfaI CTAG 5 cut(s) 84, 236, 380, 429, 438
BfmI CTRYAG 2 cut(s) 38, 348
BfrI CTTAAG 1 cut(s) 574
BisI GCNGC 5 cut(s) 38, 289, 426, 562, 591
BlsI GCNGC 5 cut(s) 39, 290, 427, 563, 592
Bme1390I CCNGG 2 cut(s) 62, 167
Bme18I GGWCC 1 cut(s) 98
BmeRI GACNNNNNGTC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 62, 167
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 2 cut(s) 120, 199
BmuI ACTGGG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 562, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 1 cut(s) 681
Bse21I CCTNAGG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 62, 167
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 411, 446
BseNI ACTGG 1 cut(s) 681
BseX3I CGGCCG 1 cut(s) 555
BseXI GCAGC 4 cut(s) 24, 300, 437, 548
Bsh1236I CGCG 1 cut(s) 590
Bsh1285I CGRYCG 1 cut(s) 558
BshFI GGCC 2 cut(s) 557, 666
BsiEI CGRYCG 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 2 cut(s) 74, 614
BsmFI GGGAC 1 cut(s) 662
BsmI GAATGC 2 cut(s) 22, 94
BsnI GGCC 2 cut(s) 557, 666
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 4 cut(s) 202, 220, 502, 549
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 2 cut(s) 590, 712
BspANI GGCC 2 cut(s) 557, 666
BspCNI CTCAG 2 cut(s) 412, 447
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 42
BspPI GGATC 3 cut(s) 210, 228, 510
BspTI CTTAAG 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 202, 220, 502, 549
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 62, 167
Bst4CI ACNGT 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 574
BstAPI GCANNNNNTGC 1 cut(s) 612
BstC8I GCNNGC 4 cut(s) 525, 540, 559, 697
BstDEI CTNAG 3 cut(s) 115, 420, 455
BstDSI CCRYGG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 4 cut(s) 205, 223, 505, 552
BstMAI GTCTC 2 cut(s) 74, 614
BstMBI GATC 4 cut(s) 202, 220, 502, 549
BstMCI CGRYCG 1 cut(s) 558
BstMWI GCNNNNNNNGC 4 cut(s) 37, 425, 570, 612
BstNI CCWGG 2 cut(s) 62, 167
BstSCI CCNGG 2 cut(s) 60, 165
BstSFI CTRYAG 2 cut(s) 38, 348
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 24, 300, 437, 548
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BstZI CGGCCG 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 115
BsuRI GGCC 2 cut(s) 557, 666
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 537
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 3 cut(s) 342, 481, 545
Cac8I GCNNGC 4 cut(s) 525, 540, 559, 697
CaiI CAGNNNCTG 1 cut(s) 612
CfoI GCGC 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 98
CsiI ACCWGGT 1 cut(s) 165
Csp6I GTAC 3 cut(s) 249, 321, 641
CviAII CATG 3 cut(s) 187, 199, 370
CviQI GTAC 3 cut(s) 249, 321, 641
DdeI CTNAG 3 cut(s) 115, 420, 455
DpnI GATC 4 cut(s) 204, 222, 504, 551
DpnII GATC 4 cut(s) 202, 220, 502, 549
DriI GACNNNNNGTC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 555
EagI CGGCCG 1 cut(s) 555
Eam1105I GACNNNNNGTC 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 98
Eco52I CGGCCG 1 cut(s) 555
Eco81I CCTNAGG 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 60, 165
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 190, 202, 373
FaiI YATR 9 cut(s) 150, 188, 200, 285, 326, 350, 371, 402, 653
FaqI GGGAC 1 cut(s) 662
FatI CATG 3 cut(s) 186, 198, 369
FauI CCCGC 1 cut(s) 705
Fnu4HI GCNGC 5 cut(s) 38, 289, 426, 562, 591
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 5 cut(s) 38, 289, 426, 562, 591
FspBI CTAG 5 cut(s) 84, 236, 380, 429, 438
GlaI GCGC 1 cut(s) 589
GluI GCNGC 5 cut(s) 38, 289, 426, 562, 591
HaeIII GGCC 2 cut(s) 557, 666
HapII CCGG 1 cut(s) 558
HhaI GCGC 1 cut(s) 590
Hin1II CATG 3 cut(s) 190, 202, 373
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HinfI GANTC 2 cut(s) 239, 479
HpaI GTTAAC 1 cut(s) 720
HpaII CCGG 1 cut(s) 558
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 321, 720
Hpy188I TCNGA 5 cut(s) 232, 244, 331, 507, 636
Hpy188III TCNNGA 2 cut(s) 96, 380
Hpy8I GTNNAC 2 cut(s) 321, 720
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 643
HpyCH4V TGCA 4 cut(s) 40, 190, 392, 564
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 425, 570, 612
HpyF3I CTNAG 3 cut(s) 115, 420, 455
HpySE526I ACGT 1 cut(s) 643
Hsp92II CATG 3 cut(s) 190, 202, 373
HspAI GCGC 1 cut(s) 588
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 4 cut(s) 202, 220, 502, 549
LmnI GCTCC 2 cut(s) 355, 570
Lsp1109I GCAGC 4 cut(s) 24, 300, 437, 548
LweI GCATC 2 cut(s) 120, 199
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 5 cut(s) 84, 236, 380, 429, 438
MaeII ACGT 1 cut(s) 643
MaeIII GTNAC 3 cut(s) 109, 410, 476
MalI GATC 4 cut(s) 204, 222, 504, 551
MboI GATC 4 cut(s) 202, 220, 502, 549
MboII GAAGA 1 cut(s) 395
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 3 cut(s) 145, 173, 387
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 9 cut(s) 19, 111, 211, 258, 415, 501, 528, 656, 702
Mph1103I ATGCAT 1 cut(s) 192
MroNI GCCGGC 1 cut(s) 557
MseI TTAA 4 cut(s) 135, 447, 575, 719
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 31
MspCI CTTAAG 1 cut(s) 574
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 2 cut(s) 62, 167
Mva1269I GAATGC 2 cut(s) 22, 94
MvaI CCWGG 2 cut(s) 62, 167
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 4 cut(s) 37, 425, 570, 612
NaeI GCCGGC 1 cut(s) 559
NcoI CCATGG 1 cut(s) 369
NdeII GATC 4 cut(s) 202, 220, 502, 549
NgoMIV GCCGGC 1 cut(s) 557
NlaIII CATG 3 cut(s) 190, 202, 373
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 2 cut(s) 533, 671
NmuCI GTSAC 3 cut(s) 109, 410, 476
NsiI ATGCAT 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 497
PctI GAATGC 2 cut(s) 22, 94
PdiI GCCGGC 1 cut(s) 559
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 5 cut(s) 39, 290, 427, 563, 592
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
PsiI TTATAA 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 60, 165
PspGI CCWGG 2 cut(s) 60, 165
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 612
PsuI RGATCY 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 3 cut(s) 250, 322, 642
RsaNI GTAC 3 cut(s) 249, 321, 641
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 4 cut(s) 135, 447, 575, 719
SatI GCNGC 5 cut(s) 38, 289, 426, 562, 591
Sau3AI GATC 4 cut(s) 202, 220, 502, 549
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 62, 167
SduI GDGCHC 1 cut(s) 360
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 2 cut(s) 120, 199
SfcI CTRYAG 2 cut(s) 38, 348
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
Sse9I AATT 3 cut(s) 145, 173, 387
SsiI CCGC 2 cut(s) 590, 712
SspMI CTAG 5 cut(s) 84, 236, 380, 429, 438
StyD4I CCNGG 2 cut(s) 60, 165
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 646
TaqI TCGA 2 cut(s) 11, 171
TasI AATT 3 cut(s) 145, 173, 387
TatI WGTACW 1 cut(s) 320
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 4 cut(s) 135, 447, 575, 719
Tru9I TTAA 4 cut(s) 135, 447, 575, 719
TscAI CASTG 3 cut(s) 342, 481, 552
TseFI GTSAC 3 cut(s) 109, 410, 476
TseI GCWGC 4 cut(s) 37, 288, 425, 561
Tsp45I GTSAC 3 cut(s) 109, 410, 476
TspDTI ATGAA 2 cut(s) 29, 465
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 3 cut(s) 342, 481, 552
Vha464I CTTAAG 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 379
XspI CTAG 5 cut(s) 84, 236, 380, 429, 438
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.