gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 41 - 192 | 2.1e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 537 |
| AclWI | GGATC | 6 cut(s) | 87, 111, 422, 627, 640, 709 |
| AcsI | RAATTY | 2 cut(s) | 15, 757 |
| AfaI | GTAC | 2 cut(s) | 130, 203 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 159, 319, 484 |
| AflII | CTTAAG | 2 cut(s) | 94, 713 |
| AgsI | TTSAA | 4 cut(s) | 294, 344, 455, 739 |
| AluBI | AGCT | 5 cut(s) | 254, 379, 492, 529, 557 |
| AluI | AGCT | 5 cut(s) | 254, 379, 492, 529, 557 |
| Alw26I | GTCTC | 1 cut(s) | 206 |
| AlwI | GGATC | 6 cut(s) | 87, 111, 422, 627, 640, 709 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 239 |
| ApeKI | GCWGC | 2 cut(s) | 263, 626 |
| ApoI | RAATTY | 2 cut(s) | 15, 757 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 459 |
| AspA2I | CCTAGG | 1 cut(s) | 67 |
| AspLEI | GCGC | 2 cut(s) | 337, 538 |
| AvrII | CCTAGG | 1 cut(s) | 67 |
| BamHI | GGATCC | 1 cut(s) | 632 |
| BbvI | GCAGC | 2 cut(s) | 275, 613 |
| BccI | CCATC | 2 cut(s) | 36, 313 |
| BcoDI | GTCTC | 1 cut(s) | 206 |
| BfaI | CTAG | 4 cut(s) | 68, 410, 558, 803 |
| BfmI | CTRYAG | 1 cut(s) | 472 |
| BfrI | CTTAAG | 2 cut(s) | 94, 713 |
| BglII | AGATCT | 1 cut(s) | 167 |
| BisI | GCNGC | 2 cut(s) | 264, 627 |
| BlnI | CCTAGG | 1 cut(s) | 67 |
| BlsI | GCNGC | 2 cut(s) | 265, 628 |
| BmcAI | AGTACT | 1 cut(s) | 130 |
| BmiI | GGNNCC | 1 cut(s) | 634 |
| BmsI | GCATC | 2 cut(s) | 235, 457 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 655, 687 |
| Bpu10I | CCTNAGC | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 1 cut(s) | 67 |
| BsaWI | WCCGGW | 1 cut(s) | 826 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 159, 319, 484 |
| Bse1I | ACTGG | 1 cut(s) | 126 |
| Bse3DI | GCAATG | 1 cut(s) | 228 |
| BseDI | CCNNGG | 1 cut(s) | 67 |
| BseGI | GGATG | 3 cut(s) | 47, 529, 692 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 159, 319, 484 |
| BseMI | GCAATG | 1 cut(s) | 228 |
| BseMII | CTCAG | 4 cut(s) | 11, 152, 380, 719 |
| BseNI | ACTGG | 1 cut(s) | 126 |
| BseRI | GAGGAG | 1 cut(s) | 676 |
| BseXI | GCAGC | 2 cut(s) | 275, 613 |
| BsiSI | CCGG | 1 cut(s) | 827 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 159, 319, 484 |
| BsmAI | GTCTC | 1 cut(s) | 206 |
| Bsp143I | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| BspCNI | CTCAG | 4 cut(s) | 12, 151, 381, 718 |
| BspHI | TCATGA | 1 cut(s) | 192 |
| BspLI | GGNNCC | 1 cut(s) | 634 |
| BspPI | GGATC | 6 cut(s) | 87, 111, 422, 627, 640, 709 |
| BspTI | CTTAAG | 2 cut(s) | 94, 713 |
| BsrDI | GCAATG | 1 cut(s) | 228 |
| BsrI | ACTGG | 1 cut(s) | 126 |
| BssECI | CCNNGG | 1 cut(s) | 67 |
| BssMI | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| BssT1I | CCWWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 4 cut(s) | 217, 327, 733, 782 |
| Bst6I | CTCTTC | 1 cut(s) | 694 |
| BstAFI | CTTAAG | 2 cut(s) | 94, 713 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 544 |
| BstDEI | CTNAG | 6 cut(s) | 20, 138, 330, 389, 705, 786 |
| BstF5I | GGATG | 3 cut(s) | 47, 529, 692 |
| BstHHI | GCGC | 2 cut(s) | 337, 538 |
| BstKTI | GATC | 6 cut(s) | 82, 106, 170, 430, 635, 704 |
| BstMAI | GTCTC | 1 cut(s) | 206 |
| BstMBI | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 260, 535, 544, 665, 750 |
| BstSFI | CTRYAG | 1 cut(s) | 472 |
| BstV1I | GCAGC | 2 cut(s) | 275, 613 |
| BstX2I | RGATCY | 4 cut(s) | 79, 167, 632, 701 |
| BstYI | RGATCY | 4 cut(s) | 79, 167, 632, 701 |
| BtsCI | GGATG | 3 cut(s) | 47, 529, 692 |
| BtsIMutI | CAGTG | 1 cut(s) | 323 |
| CaiI | CAGNNNCTG | 1 cut(s) | 239 |
| CciI | TCATGA | 1 cut(s) | 192 |
| CfoI | GCGC | 2 cut(s) | 337, 538 |
| Csp6I | GTAC | 2 cut(s) | 129, 202 |
| CviAII | CATG | 5 cut(s) | 50, 193, 205, 656, 769 |
| CviQI | GTAC | 2 cut(s) | 129, 202 |
| DdeI | CTNAG | 6 cut(s) | 20, 138, 330, 389, 705, 786 |
| DpnI | GATC | 6 cut(s) | 81, 105, 169, 429, 634, 703 |
| DpnII | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| Eam1104I | CTCTTC | 1 cut(s) | 694 |
| EarI | CTCTTC | 1 cut(s) | 694 |
| Eco130I | CCWWGG | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 1 cut(s) | 67 |
| ErhI | CCWWGG | 1 cut(s) | 67 |
| FaeI | CATG | 5 cut(s) | 53, 196, 208, 659, 772 |
| FatI | CATG | 5 cut(s) | 49, 192, 204, 655, 768 |
| Fnu4HI | GCNGC | 2 cut(s) | 264, 627 |
| FokI | GGATG | 3 cut(s) | 54, 536, 679 |
| Fsp4HI | GCNGC | 2 cut(s) | 264, 627 |
| FspBI | CTAG | 4 cut(s) | 68, 410, 558, 803 |
| FspI | TGCGCA | 1 cut(s) | 537 |
| GlaI | GCGC | 2 cut(s) | 336, 537 |
| GluI | GCNGC | 2 cut(s) | 264, 627 |
| HapII | CCGG | 1 cut(s) | 827 |
| HhaI | GCGC | 2 cut(s) | 337, 538 |
| Hin1II | CATG | 5 cut(s) | 53, 196, 208, 659, 772 |
| Hin6I | GCGC | 2 cut(s) | 335, 536 |
| HinP1I | GCGC | 2 cut(s) | 335, 536 |
| HindIII | AAGCTT | 1 cut(s) | 252 |
| HinfI | GANTC | 2 cut(s) | 287, 455 |
| HpaII | CCGG | 1 cut(s) | 827 |
| Hpy166II | GTNNAC | 2 cut(s) | 647, 824 |
| Hpy188I | TCNGA | 4 cut(s) | 21, 123, 141, 708 |
| Hpy188III | TCNNGA | 6 cut(s) | 83, 193, 284, 425, 452, 464 |
| Hpy8I | GTNNAC | 2 cut(s) | 647, 824 |
| HpyAV | CCTTC | 6 cut(s) | 338, 344, 470, 568, 616, 805 |
| HpyCH4III | ACNGT | 4 cut(s) | 217, 327, 733, 782 |
| HpyCH4IV | ACGT | 3 cut(s) | 54, 519, 643 |
| HpyCH4V | TGCA | 5 cut(s) | 26, 233, 367, 547, 753 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 260, 535, 544, 665, 750 |
| HpyF3I | CTNAG | 6 cut(s) | 20, 138, 330, 389, 705, 786 |
| HpySE526I | ACGT | 3 cut(s) | 54, 519, 643 |
| Hsp92II | CATG | 5 cut(s) | 53, 196, 208, 659, 772 |
| HspAI | GCGC | 2 cut(s) | 335, 536 |
| Kzo9I | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| Lsp1109I | GCAGC | 2 cut(s) | 275, 613 |
| LweI | GCATC | 2 cut(s) | 235, 457 |
| MaeI | CTAG | 4 cut(s) | 68, 410, 558, 803 |
| MaeII | ACGT | 3 cut(s) | 54, 519, 643 |
| MaeIII | GTNAC | 1 cut(s) | 764 |
| MalI | GATC | 6 cut(s) | 81, 105, 169, 429, 634, 703 |
| MboI | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| MboII | GAAGA | 4 cut(s) | 282, 563, 681, 784 |
| MflI | RGATCY | 4 cut(s) | 79, 167, 632, 701 |
| MluCI | AATT | 4 cut(s) | 15, 72, 414, 757 |
| MmeI | TCCRAC | 1 cut(s) | 146 |
| MnlI | CCTC | 4 cut(s) | 94, 215, 599, 697 |
| MroXI | GAANNNNTTC | 1 cut(s) | 459 |
| MseI | TTAA | 3 cut(s) | 36, 95, 714 |
| MspCI | CTTAAG | 2 cut(s) | 94, 713 |
| MspI | CCGG | 1 cut(s) | 827 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 260, 535, 544, 665, 750 |
| NdeII | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| NlaIII | CATG | 5 cut(s) | 53, 196, 208, 659, 772 |
| NlaIV | GGNNCC | 1 cut(s) | 634 |
| NmuCI | GTSAC | 1 cut(s) | 764 |
| NsbI | TGCGCA | 1 cut(s) | 537 |
| PagI | TCATGA | 1 cut(s) | 192 |
| PdmI | GAANNNNTTC | 1 cut(s) | 459 |
| PfeI | GAWTC | 2 cut(s) | 287, 455 |
| PkrI | GCNGC | 2 cut(s) | 265, 628 |
| PspN4I | GGNNCC | 1 cut(s) | 634 |
| PstNI | CAGNNNCTG | 1 cut(s) | 239 |
| PsuI | RGATCY | 4 cut(s) | 79, 167, 632, 701 |
| RsaI | GTAC | 2 cut(s) | 130, 203 |
| RsaNI | GTAC | 2 cut(s) | 129, 202 |
| SaqAI | TTAA | 3 cut(s) | 36, 95, 714 |
| SatI | GCNGC | 2 cut(s) | 264, 627 |
| Sau3AI | GATC | 6 cut(s) | 79, 103, 167, 427, 632, 701 |
| ScaI | AGTACT | 1 cut(s) | 130 |
| SfaNI | GCATC | 2 cut(s) | 235, 457 |
| SfcI | CTRYAG | 1 cut(s) | 472 |
| SmlI | CTYRAG | 2 cut(s) | 94, 713 |
| SmoI | CTYRAG | 2 cut(s) | 94, 713 |
| Sse9I | AATT | 4 cut(s) | 15, 72, 414, 757 |
| SspMI | CTAG | 4 cut(s) | 68, 410, 558, 803 |
| StyI | CCWWGG | 1 cut(s) | 67 |
| TaaI | ACNGT | 4 cut(s) | 217, 327, 733, 782 |
| TaiI | ACGT | 3 cut(s) | 57, 522, 646 |
| TaqI | TCGA | 2 cut(s) | 84, 220 |
| TasI | AATT | 4 cut(s) | 15, 72, 414, 757 |
| TatI | WGTACW | 2 cut(s) | 128, 201 |
| TfiI | GAWTC | 2 cut(s) | 287, 455 |
| Tru1I | TTAA | 3 cut(s) | 36, 95, 714 |
| Tru9I | TTAA | 3 cut(s) | 36, 95, 714 |
| TscAI | CASTG | 1 cut(s) | 330 |
| TseFI | GTSAC | 1 cut(s) | 764 |
| TseI | GCWGC | 2 cut(s) | 263, 626 |
| Tsp45I | GTSAC | 1 cut(s) | 764 |
| TspDTI | ATGAA | 6 cut(s) | 181, 209, 221, 389, 681, 785 |
| TspRI | CASTG | 1 cut(s) | 330 |
| Vha464I | CTTAAG | 2 cut(s) | 94, 713 |
| XapI | RAATTY | 2 cut(s) | 15, 757 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 256 |
| XmaJI | CCTAGG | 1 cut(s) | 67 |
| XmnI | GAANNNNTTC | 1 cut(s) | 459 |
| XspI | CTAG | 4 cut(s) | 68, 410, 558, 803 |
| ZrmI | AGTACT | 1 cut(s) | 130 |