gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 144 |
| Acc36I | ACCTGC | 1 cut(s) | 415 |
| AclWI | GGATC | 1 cut(s) | 81 |
| AcsI | RAATTY | 2 cut(s) | 44, 471 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AfaI | GTAC | 2 cut(s) | 121, 193 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 406 |
| AluBI | AGCT | 3 cut(s) | 299, 325, 370 |
| AluI | AGCT | 3 cut(s) | 299, 325, 370 |
| Alw21I | GWGCWC | 1 cut(s) | 360 |
| Alw26I | GTCTC | 1 cut(s) | 390 |
| AlwI | GGATC | 1 cut(s) | 81 |
| Ama87I | CYCGRG | 1 cut(s) | 230 |
| ApeKI | GCWGC | 2 cut(s) | 159, 367 |
| ApoI | RAATTY | 2 cut(s) | 44, 471 |
| AseI | ATTAAT | 1 cut(s) | 381 |
| AspS9I | GGNCC | 1 cut(s) | 91 |
| AvaI | CYCGRG | 1 cut(s) | 230 |
| AvaII | GGWCC | 1 cut(s) | 91 |
| BanII | GRGCYC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 1 cut(s) | 360 |
| BbvI | GCAGC | 2 cut(s) | 171, 379 |
| BcoDI | GTCTC | 1 cut(s) | 390 |
| BfaI | CTAG | 5 cut(s) | 107, 300, 309, 387, 401 |
| BfmI | CTRYAG | 1 cut(s) | 219 |
| BfuAI | ACCTGC | 1 cut(s) | 415 |
| BisI | GCNGC | 2 cut(s) | 160, 368 |
| BlsI | GCNGC | 2 cut(s) | 161, 369 |
| Bme18I | GGWCC | 1 cut(s) | 91 |
| BmeT110I | CYCGRG | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 1 cut(s) | 91 |
| BmiI | GGNNCC | 1 cut(s) | 228 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BpmI | CTGGAG | 1 cut(s) | 272 |
| BsaI | GGTCTC | 1 cut(s) | 390 |
| BsaJI | CCNNGG | 1 cut(s) | 240 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 406 |
| BseDI | CCNNGG | 1 cut(s) | 240 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 406 |
| BseMII | CTCAG | 2 cut(s) | 317, 406 |
| BseXI | GCAGC | 2 cut(s) | 171, 379 |
| BsiHKAI | GWGCWC | 1 cut(s) | 360 |
| BsiHKCI | CYCGRG | 1 cut(s) | 230 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 406 |
| BsmAI | GTCTC | 1 cut(s) | 390 |
| Bso31I | GGTCTC | 1 cut(s) | 390 |
| BsoBI | CYCGRG | 1 cut(s) | 230 |
| Bsp1286I | GDGCHC | 2 cut(s) | 231, 360 |
| Bsp143I | GATC | 1 cut(s) | 73 |
| Bsp19I | CCATGG | 1 cut(s) | 240 |
| BspCNI | CTCAG | 2 cut(s) | 318, 405 |
| BspLI | GGNNCC | 1 cut(s) | 228 |
| BspMI | ACCTGC | 1 cut(s) | 415 |
| BspPI | GGATC | 1 cut(s) | 81 |
| BspTNI | GGTCTC | 1 cut(s) | 390 |
| BssECI | CCNNGG | 1 cut(s) | 240 |
| BssMI | GATC | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 1 cut(s) | 240 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 364, 430 |
| BstDEI | CTNAG | 2 cut(s) | 326, 392 |
| BstDSI | CCRYGG | 1 cut(s) | 240 |
| BstKTI | GATC | 1 cut(s) | 76 |
| BstMAI | GTCTC | 1 cut(s) | 390 |
| BstMBI | GATC | 1 cut(s) | 73 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 296, 364, 430 |
| BstNSI | RCATGY | 1 cut(s) | 437 |
| BstSFI | CTRYAG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 2 cut(s) | 171, 379 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BtgI | CCRYGG | 1 cut(s) | 240 |
| BtsI | GCAGTG | 1 cut(s) | 352 |
| BtsIMutI | CAGTG | 2 cut(s) | 213, 352 |
| BveI | ACCTGC | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 1 cut(s) | 91 |
| Csp6I | GTAC | 2 cut(s) | 120, 192 |
| CviAII | CATG | 5 cut(s) | 38, 70, 241, 406, 434 |
| CviJI | RGCY | 8 cut(s) | 173, 229, 239, 290, 299, 325, 370, 391 |
| CviKI_1 | RGCY | 8 cut(s) | 173, 229, 239, 290, 299, 325, 370, 391 |
| CviQI | GTAC | 2 cut(s) | 120, 192 |
| DdeI | CTNAG | 2 cut(s) | 326, 392 |
| DpnI | GATC | 1 cut(s) | 75 |
| DpnII | GATC | 1 cut(s) | 73 |
| Eco130I | CCWWGG | 1 cut(s) | 240 |
| Eco24I | GRGCYC | 1 cut(s) | 231 |
| Eco31I | GGTCTC | 1 cut(s) | 390 |
| Eco47I | GGWCC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| Eco88I | CYCGRG | 1 cut(s) | 230 |
| EcoT14I | CCWWGG | 1 cut(s) | 240 |
| EcoT22I | ATGCAT | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 1 cut(s) | 231 |
| ErhI | CCWWGG | 1 cut(s) | 240 |
| FaeI | CATG | 5 cut(s) | 41, 73, 244, 409, 437 |
| FatI | CATG | 5 cut(s) | 37, 69, 240, 405, 433 |
| Fnu4HI | GCNGC | 2 cut(s) | 160, 368 |
| FriOI | GRGCYC | 1 cut(s) | 231 |
| Fsp4HI | GCNGC | 2 cut(s) | 160, 368 |
| FspBI | CTAG | 5 cut(s) | 107, 300, 309, 387, 401 |
| GluI | GCNGC | 2 cut(s) | 160, 368 |
| GsuI | CTGGAG | 1 cut(s) | 272 |
| Hin1II | CATG | 5 cut(s) | 41, 73, 244, 409, 437 |
| Hpy166II | GTNNAC | 1 cut(s) | 192 |
| Hpy188I | TCNGA | 3 cut(s) | 103, 202, 395 |
| Hpy188III | TCNNGA | 2 cut(s) | 251, 309 |
| Hpy8I | GTNNAC | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 108, 334 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4V | TGCA | 4 cut(s) | 61, 263, 367, 433 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 296, 364, 430 |
| HpyF3I | CTNAG | 2 cut(s) | 326, 392 |
| Hsp92II | CATG | 5 cut(s) | 41, 73, 244, 409, 437 |
| Kzo9I | GATC | 1 cut(s) | 73 |
| LmnI | GCTCC | 2 cut(s) | 226, 355 |
| LpnPI | CCDG | 5 cut(s) | 65, 151, 236, 321, 410 |
| Lsp1109I | GCAGC | 2 cut(s) | 171, 379 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 5 cut(s) | 107, 300, 309, 387, 401 |
| MaeIII | GTNAC | 2 cut(s) | 281, 436 |
| MalI | GATC | 1 cut(s) | 75 |
| MboI | GATC | 1 cut(s) | 73 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MhlI | GDGCHC | 2 cut(s) | 231, 360 |
| MluCI | AATT | 5 cut(s) | 44, 258, 372, 382, 471 |
| MnlI | CCTC | 6 cut(s) | 82, 121, 129, 247, 345, 464 |
| Mph1103I | ATGCAT | 1 cut(s) | 63 |
| MseI | TTAA | 5 cut(s) | 6, 318, 375, 381, 414 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 296, 364, 430 |
| NcoI | CCATGG | 1 cut(s) | 240 |
| NdeII | GATC | 1 cut(s) | 73 |
| NlaIII | CATG | 5 cut(s) | 41, 73, 244, 409, 437 |
| NlaIV | GGNNCC | 1 cut(s) | 228 |
| NmuCI | GTSAC | 2 cut(s) | 281, 436 |
| NsiI | ATGCAT | 1 cut(s) | 63 |
| NspI | RCATGY | 1 cut(s) | 437 |
| PkrI | GCNGC | 2 cut(s) | 161, 369 |
| PshBI | ATTAAT | 1 cut(s) | 381 |
| PsiI | TTATAA | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 1 cut(s) | 228 |
| PspPI | GGNCC | 1 cut(s) | 91 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| RsaI | GTAC | 2 cut(s) | 121, 193 |
| RsaNI | GTAC | 2 cut(s) | 120, 192 |
| SaqAI | TTAA | 5 cut(s) | 6, 318, 375, 381, 414 |
| SatI | GCNGC | 2 cut(s) | 160, 368 |
| Sau3AI | GATC | 1 cut(s) | 73 |
| Sau96I | GGNCC | 1 cut(s) | 91 |
| SduI | GDGCHC | 2 cut(s) | 231, 360 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| SfcI | CTRYAG | 1 cut(s) | 219 |
| SinI | GGWCC | 1 cut(s) | 91 |
| Sse9I | AATT | 5 cut(s) | 44, 258, 372, 382, 471 |
| SspMI | CTAG | 5 cut(s) | 107, 300, 309, 387, 401 |
| StyI | CCWWGG | 1 cut(s) | 240 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TasI | AATT | 5 cut(s) | 44, 258, 372, 382, 471 |
| TatI | WGTACW | 2 cut(s) | 119, 191 |
| Tru1I | TTAA | 5 cut(s) | 6, 318, 375, 381, 414 |
| Tru9I | TTAA | 5 cut(s) | 6, 318, 375, 381, 414 |
| TscAI | CASTG | 2 cut(s) | 213, 352 |
| TseFI | GTSAC | 2 cut(s) | 281, 436 |
| TseI | GCWGC | 2 cut(s) | 159, 367 |
| Tsp45I | GTSAC | 2 cut(s) | 281, 436 |
| TspRI | CASTG | 2 cut(s) | 213, 352 |
| VpaK11BI | GGWCC | 1 cut(s) | 91 |
| VspI | ATTAAT | 1 cut(s) | 381 |
| XapI | RAATTY | 2 cut(s) | 44, 471 |
| XbaI | TCTAGA | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 437 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 247 |
| XspI | CTAG | 5 cut(s) | 107, 300, 309, 387, 401 |
| Zsp2I | ATGCAT | 1 cut(s) | 63 |