gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 21 - 170 | 4.5e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 239 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 13, 307 |
| AccI | GTMKAC | 1 cut(s) | 134 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 3 cut(s) | 87, 255, 650 |
| AfaI | GTAC | 1 cut(s) | 511 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 13, 307 |
| AflII | CTTAAG | 1 cut(s) | 269 |
| AgsI | TTSAA | 2 cut(s) | 262, 691 |
| AluBI | AGCT | 7 cut(s) | 233, 313, 334, 463, 617, 625, 732 |
| AluI | AGCT | 7 cut(s) | 233, 313, 334, 463, 617, 625, 732 |
| Alw21I | GWGCWC | 1 cut(s) | 734 |
| AoxI | GGCC | 1 cut(s) | 381 |
| ApeKI | GCWGC | 3 cut(s) | 159, 611, 614 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AspS9I | GGNCC | 1 cut(s) | 16 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BaeGI | GKGCMC | 1 cut(s) | 666 |
| BanI | GGYRCC | 1 cut(s) | 239 |
| BanII | GRGCYC | 1 cut(s) | 734 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| Bbv12I | GWGCWC | 1 cut(s) | 734 |
| BbvI | GCAGC | 3 cut(s) | 146, 598, 626 |
| BccI | CCATC | 5 cut(s) | 47, 106, 420, 529, 593 |
| BciVI | GTATCC | 1 cut(s) | 139 |
| BclI | TGATCA | 1 cut(s) | 702 |
| BfaI | CTAG | 1 cut(s) | 252 |
| BfmI | CTRYAG | 2 cut(s) | 406, 612 |
| BfrI | CTTAAG | 1 cut(s) | 269 |
| BfuI | GTATCC | 1 cut(s) | 139 |
| BisI | GCNGC | 3 cut(s) | 160, 612, 615 |
| BlsI | GCNGC | 3 cut(s) | 161, 613, 616 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmgT120I | GGNCC | 1 cut(s) | 16 |
| BmiI | GGNNCC | 1 cut(s) | 241 |
| BmsI | GCATC | 2 cut(s) | 171, 352 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 452, 484, 716 |
| BsaBI | GATNNNNATC | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 1 cut(s) | 735 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 13, 307 |
| Bse1I | ACTGG | 1 cut(s) | 98 |
| Bse3DI | GCAATG | 1 cut(s) | 201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 320 |
| BseDI | CCNNGG | 1 cut(s) | 735 |
| BseGI | GGATG | 2 cut(s) | 58, 705 |
| BseJI | GATNNNNATC | 1 cut(s) | 320 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 13, 307 |
| BseMI | GCAATG | 1 cut(s) | 201 |
| BseMII | CTCAG | 3 cut(s) | 165, 221, 326 |
| BseNI | ACTGG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 740 |
| BseSI | GKGCMC | 1 cut(s) | 666 |
| BseXI | GCAGC | 3 cut(s) | 146, 598, 626 |
| BshFI | GGCC | 1 cut(s) | 383 |
| BshNI | GGYRCC | 1 cut(s) | 239 |
| BsiHKAI | GWGCWC | 1 cut(s) | 734 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 13, 307 |
| BsnI | GGCC | 1 cut(s) | 383 |
| Bsp1286I | GDGCHC | 2 cut(s) | 666, 734 |
| Bsp143I | GATC | 2 cut(s) | 633, 702 |
| BspANI | GGCC | 1 cut(s) | 383 |
| BspCNI | CTCAG | 3 cut(s) | 166, 220, 327 |
| BspLI | GGNNCC | 1 cut(s) | 241 |
| BspMAI | CTGCAG | 1 cut(s) | 616 |
| BspT107I | GGYRCC | 1 cut(s) | 239 |
| BspTI | CTTAAG | 1 cut(s) | 269 |
| BsrDI | GCAATG | 1 cut(s) | 201 |
| BsrI | ACTGG | 1 cut(s) | 98 |
| BssECI | CCNNGG | 1 cut(s) | 735 |
| BssMI | GATC | 2 cut(s) | 633, 702 |
| BssT1I | CCWWGG | 1 cut(s) | 735 |
| Bst4CI | ACNGT | 2 cut(s) | 151, 526 |
| BstAFI | CTTAAG | 1 cut(s) | 269 |
| BstDEI | CTNAG | 5 cut(s) | 174, 207, 335, 385, 416 |
| BstF5I | GGATG | 2 cut(s) | 58, 705 |
| BstKTI | GATC | 2 cut(s) | 636, 705 |
| BstMBI | GATC | 2 cut(s) | 633, 702 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 239, 648 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstSFI | CTRYAG | 2 cut(s) | 406, 612 |
| BstSLI | GKGCMC | 1 cut(s) | 666 |
| BstV1I | GCAGC | 3 cut(s) | 146, 598, 626 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 112 |
| BsuI | GTATCC | 1 cut(s) | 139 |
| BsuRI | GGCC | 1 cut(s) | 383 |
| BtsCI | GGATG | 2 cut(s) | 58, 705 |
| BtsI | GCAGTG | 1 cut(s) | 683 |
| BtsIMutI | CAGTG | 5 cut(s) | 63, 156, 452, 600, 683 |
| Cfr13I | GGNCC | 1 cut(s) | 16 |
| Csp6I | GTAC | 1 cut(s) | 510 |
| CviAII | CATG | 6 cut(s) | 13, 307, 349, 377, 667, 744 |
| CviQI | GTAC | 1 cut(s) | 510 |
| DdeI | CTNAG | 5 cut(s) | 174, 207, 335, 385, 416 |
| DpnI | GATC | 2 cut(s) | 635, 704 |
| DpnII | GATC | 2 cut(s) | 633, 702 |
| Ecl136II | GAGCTC | 1 cut(s) | 732 |
| Eco130I | CCWWGG | 1 cut(s) | 735 |
| Eco24I | GRGCYC | 1 cut(s) | 734 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| Eco53kI | GAGCTC | 1 cut(s) | 732 |
| Eco57I | CTGAAG | 3 cut(s) | 87, 255, 650 |
| EcoICRI | GAGCTC | 1 cut(s) | 732 |
| EcoT14I | CCWWGG | 1 cut(s) | 735 |
| EcoT38I | GRGCYC | 1 cut(s) | 734 |
| ErhI | CCWWGG | 1 cut(s) | 735 |
| FaeI | CATG | 6 cut(s) | 16, 310, 352, 380, 670, 747 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 629, 661 |
| FatI | CATG | 6 cut(s) | 12, 306, 348, 376, 666, 743 |
| FbaI | TGATCA | 1 cut(s) | 702 |
| FblI | GTMKAC | 1 cut(s) | 134 |
| Fnu4HI | GCNGC | 3 cut(s) | 160, 612, 615 |
| FokI | GGATG | 2 cut(s) | 65, 712 |
| FriOI | GRGCYC | 1 cut(s) | 734 |
| Fsp4HI | GCNGC | 3 cut(s) | 160, 612, 615 |
| FspBI | CTAG | 1 cut(s) | 252 |
| GluI | GCNGC | 3 cut(s) | 160, 612, 615 |
| HaeIII | GGCC | 1 cut(s) | 383 |
| Hin1II | CATG | 6 cut(s) | 16, 310, 352, 380, 670, 747 |
| HincII | GTYRAC | 2 cut(s) | 187, 529 |
| HindII | GTYRAC | 2 cut(s) | 187, 529 |
| HinfI | GANTC | 2 cut(s) | 246, 389 |
| Hpy166II | GTNNAC | 4 cut(s) | 135, 187, 512, 529 |
| Hpy188I | TCNGA | 4 cut(s) | 145, 210, 218, 561 |
| Hpy188III | TCNNGA | 1 cut(s) | 691 |
| Hpy8I | GTNNAC | 4 cut(s) | 135, 187, 512, 529 |
| HpyAV | CCTTC | 2 cut(s) | 230, 496 |
| HpyCH4III | ACNGT | 2 cut(s) | 151, 526 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 162, 182, 365, 376, 614, 651 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 239, 648 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 207, 335, 385, 416 |
| Hsp92II | CATG | 6 cut(s) | 16, 310, 352, 380, 670, 747 |
| Ksp22I | TGATCA | 1 cut(s) | 702 |
| Kzo9I | GATC | 2 cut(s) | 633, 702 |
| LmnI | GCTCC | 2 cut(s) | 310, 737 |
| LpnPI | CCDG | 7 cut(s) | 79, 115, 186, 256, 353, 545, 603 |
| Lsp1109I | GCAGC | 3 cut(s) | 146, 598, 626 |
| LweI | GCATC | 2 cut(s) | 171, 352 |
| MaeI | CTAG | 1 cut(s) | 252 |
| MaeIII | GTNAC | 1 cut(s) | 224 |
| MalI | GATC | 2 cut(s) | 635, 704 |
| MboI | GATC | 2 cut(s) | 633, 702 |
| MboII | GAAGA | 5 cut(s) | 80, 179, 592, 643, 682 |
| MhlI | GDGCHC | 2 cut(s) | 666, 734 |
| MluCI | AATT | 1 cut(s) | 212 |
| MlyI | GAGTC | 1 cut(s) | 240 |
| MmeI | TCCRAC | 2 cut(s) | 30, 123 |
| MnlI | CCTC | 5 cut(s) | 149, 404, 486, 676, 718 |
| MseI | TTAA | 3 cut(s) | 270, 498, 717 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| MspA1I | CMGCKG | 1 cut(s) | 617 |
| MspCI | CTTAAG | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 239, 648 |
| NdeII | GATC | 2 cut(s) | 633, 702 |
| NlaIII | CATG | 6 cut(s) | 16, 310, 352, 380, 670, 747 |
| NlaIV | GGNNCC | 1 cut(s) | 241 |
| NmuCI | GTSAC | 1 cut(s) | 224 |
| NspI | RCATGY | 1 cut(s) | 380 |
| PfeI | GAWTC | 1 cut(s) | 389 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 13, 307 |
| PkrI | GCNGC | 3 cut(s) | 161, 613, 616 |
| PleI | GAGTC | 1 cut(s) | 240 |
| PpsI | GAGTC | 1 cut(s) | 240 |
| Psp124BI | GAGCTC | 1 cut(s) | 734 |
| PspN4I | GGNNCC | 1 cut(s) | 241 |
| PspPI | GGNCC | 1 cut(s) | 16 |
| PstI | CTGCAG | 1 cut(s) | 616 |
| PvuII | CAGCTG | 1 cut(s) | 617 |
| RsaI | GTAC | 1 cut(s) | 511 |
| RsaNI | GTAC | 1 cut(s) | 510 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SacI | GAGCTC | 1 cut(s) | 734 |
| SaqAI | TTAA | 3 cut(s) | 270, 498, 717 |
| SatI | GCNGC | 3 cut(s) | 160, 612, 615 |
| Sau3AI | GATC | 2 cut(s) | 633, 702 |
| Sau96I | GGNCC | 1 cut(s) | 16 |
| SchI | GAGTC | 1 cut(s) | 240 |
| SduI | GDGCHC | 2 cut(s) | 666, 734 |
| SfaNI | GCATC | 2 cut(s) | 171, 352 |
| SfcI | CTRYAG | 2 cut(s) | 406, 612 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| Sse9I | AATT | 1 cut(s) | 212 |
| SspMI | CTAG | 1 cut(s) | 252 |
| SstI | GAGCTC | 1 cut(s) | 734 |
| StyI | CCWWGG | 1 cut(s) | 735 |
| TaaI | ACNGT | 2 cut(s) | 151, 526 |
| TaqI | TCGA | 1 cut(s) | 165 |
| TasI | AATT | 1 cut(s) | 212 |
| TatI | WGTACW | 1 cut(s) | 509 |
| TfiI | GAWTC | 1 cut(s) | 389 |
| Tru1I | TTAA | 3 cut(s) | 270, 498, 717 |
| Tru9I | TTAA | 3 cut(s) | 270, 498, 717 |
| TscAI | CASTG | 5 cut(s) | 70, 156, 459, 607, 683 |
| TseFI | GTSAC | 1 cut(s) | 224 |
| TseI | GCWGC | 3 cut(s) | 159, 611, 614 |
| Tsp45I | GTSAC | 1 cut(s) | 224 |
| TspDTI | ATGAA | 2 cut(s) | 48, 683 |
| TspRI | CASTG | 5 cut(s) | 70, 156, 459, 607, 683 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 13, 307 |
| Vha464I | CTTAAG | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 380 |
| XmiI | GTMKAC | 1 cut(s) | 134 |
| XspI | CTAG | 1 cut(s) | 252 |