gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 41 - 198 | 9.4e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 142 |
| AatII | GACGTC | 1 cut(s) | 356 |
| Acc36I | ACCTGC | 1 cut(s) | 142 |
| AccI | GTMKAC | 1 cut(s) | 408 |
| AclWI | GGATC | 1 cut(s) | 438 |
| AcsI | RAATTY | 3 cut(s) | 4, 52, 613 |
| AcyI | GRCGYC | 1 cut(s) | 353 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 44 |
| AflII | CTTAAG | 1 cut(s) | 506 |
| AgsI | TTSAA | 7 cut(s) | 43, 58, 400, 500, 628, 790, 841 |
| AjnI | CCWGG | 2 cut(s) | 282, 601 |
| AluBI | AGCT | 1 cut(s) | 424 |
| AluI | AGCT | 1 cut(s) | 424 |
| Alw21I | GWGCWC | 1 cut(s) | 393 |
| Alw26I | GTCTC | 1 cut(s) | 230 |
| AlwI | GGATC | 1 cut(s) | 438 |
| Ama87I | CYCGRG | 1 cut(s) | 434 |
| AoxI | GGCC | 2 cut(s) | 641, 833 |
| ApaI | GGGCCC | 1 cut(s) | 837 |
| ApeKI | GCWGC | 3 cut(s) | 413, 416, 695 |
| ApoI | RAATTY | 3 cut(s) | 4, 52, 613 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 278 |
| AspS9I | GGNCC | 3 cut(s) | 722, 833, 834 |
| AsuHPI | GGTGA | 1 cut(s) | 226 |
| AsuII | TTCGAA | 1 cut(s) | 8 |
| AvaI | CYCGRG | 1 cut(s) | 434 |
| AvaII | GGWCC | 1 cut(s) | 722 |
| BaeGI | GKGCMC | 1 cut(s) | 837 |
| BanII | GRGCYC | 2 cut(s) | 39, 837 |
| BbsI | GAAGAC | 2 cut(s) | 129, 179 |
| Bbv12I | GWGCWC | 1 cut(s) | 393 |
| BbvI | GCAGC | 3 cut(s) | 400, 428, 682 |
| BccI | CCATC | 4 cut(s) | 91, 177, 196, 362 |
| BciT130I | CCWGG | 2 cut(s) | 284, 603 |
| BcoDI | GTCTC | 1 cut(s) | 230 |
| BfaI | CTAG | 2 cut(s) | 89, 717 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BfrI | CTTAAG | 1 cut(s) | 506 |
| BfuAI | ACCTGC | 1 cut(s) | 142 |
| BisI | GCNGC | 3 cut(s) | 414, 417, 696 |
| BlpI | GCTNAGC | 1 cut(s) | 587 |
| BlsI | GCNGC | 3 cut(s) | 415, 418, 697 |
| Bme1390I | CCNGG | 2 cut(s) | 284, 603 |
| Bme18I | GGWCC | 1 cut(s) | 722 |
| BmeT110I | CYCGRG | 1 cut(s) | 434 |
| BmgT120I | GGNCC | 3 cut(s) | 722, 833, 834 |
| BmiI | GGNNCC | 1 cut(s) | 835 |
| BmrFI | CCNGG | 2 cut(s) | 284, 603 |
| BmsI | GCATC | 1 cut(s) | 429 |
| BpiI | GAAGAC | 2 cut(s) | 129, 179 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 542, 574 |
| BpmI | CTGGAG | 1 cut(s) | 305 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 587 |
| Bpu14I | TTCGAA | 1 cut(s) | 8 |
| BpuEI | CTTGAG | 2 cut(s) | 344, 509 |
| BsaBI | GATNNNNATC | 1 cut(s) | 105 |
| BsaHI | GRCGYC | 1 cut(s) | 353 |
| BsaJI | CCNNGG | 1 cut(s) | 602 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 44 |
| Bse1I | ACTGG | 2 cut(s) | 257, 378 |
| Bse8I | GATNNNNATC | 1 cut(s) | 105 |
| BseBI | CCWGG | 2 cut(s) | 284, 603 |
| BseDI | CCNNGG | 1 cut(s) | 602 |
| BseGI | GGATG | 2 cut(s) | 174, 207 |
| BseJI | GATNNNNATC | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 44 |
| BseMII | CTCAG | 3 cut(s) | 107, 225, 578 |
| BseNI | ACTGG | 2 cut(s) | 257, 378 |
| BseRI | GAGGAG | 3 cut(s) | 16, 590, 703 |
| BseSI | GKGCMC | 1 cut(s) | 837 |
| BseXI | GCAGC | 3 cut(s) | 400, 428, 682 |
| BshFI | GGCC | 2 cut(s) | 643, 835 |
| BsiHKAI | GWGCWC | 1 cut(s) | 393 |
| BsiHKCI | CYCGRG | 1 cut(s) | 434 |
| BslFI | GGGAC | 3 cut(s) | 619, 795, 809 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 44 |
| BsmAI | GTCTC | 1 cut(s) | 230 |
| BsmFI | GGGAC | 3 cut(s) | 619, 795, 809 |
| BsmI | GAATGC | 1 cut(s) | 16 |
| BsnI | GGCC | 2 cut(s) | 643, 835 |
| BsoBI | CYCGRG | 1 cut(s) | 434 |
| Bsp119I | TTCGAA | 1 cut(s) | 8 |
| Bsp120I | GGGCCC | 1 cut(s) | 833 |
| Bsp1286I | GDGCHC | 3 cut(s) | 39, 393, 837 |
| Bsp143I | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 587 |
| BspANI | GGCC | 2 cut(s) | 643, 835 |
| BspCNI | CTCAG | 3 cut(s) | 108, 226, 579 |
| BspLI | GGNNCC | 1 cut(s) | 835 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspMI | ACCTGC | 1 cut(s) | 142 |
| BspPI | GGATC | 1 cut(s) | 438 |
| BspQI | GCTCTTC | 1 cut(s) | 839 |
| BspT104I | TTCGAA | 1 cut(s) | 8 |
| BspTI | CTTAAG | 1 cut(s) | 506 |
| BsrI | ACTGG | 2 cut(s) | 257, 378 |
| BssECI | CCNNGG | 1 cut(s) | 602 |
| BssMI | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| BssNI | GRCGYC | 1 cut(s) | 353 |
| Bst2UI | CCWGG | 2 cut(s) | 284, 603 |
| Bst4CI | ACNGT | 3 cut(s) | 241, 610, 800 |
| Bst6I | CTCTTC | 2 cut(s) | 215, 839 |
| BstACI | GRCGYC | 1 cut(s) | 353 |
| BstAFI | CTTAAG | 1 cut(s) | 506 |
| BstBI | TTCGAA | 1 cut(s) | 8 |
| BstDEI | CTNAG | 5 cut(s) | 17, 116, 234, 587, 669 |
| BstF5I | GGATG | 2 cut(s) | 174, 207 |
| BstKTI | GATC | 5 cut(s) | 84, 109, 433, 558, 597 |
| BstMAI | GTCTC | 1 cut(s) | 230 |
| BstMBI | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 296, 670, 704 |
| BstNI | CCWGG | 2 cut(s) | 284, 603 |
| BstSCI | CCNGG | 2 cut(s) | 282, 601 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstSLI | GKGCMC | 1 cut(s) | 837 |
| BstV1I | GCAGC | 3 cut(s) | 400, 428, 682 |
| BstV2I | GAAGAC | 2 cut(s) | 129, 179 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 202 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BsuRI | GGCC | 2 cut(s) | 643, 835 |
| BtsCI | GGATG | 2 cut(s) | 174, 207 |
| BtsI | GCAGTG | 1 cut(s) | 828 |
| BtsIMutI | CAGTG | 5 cut(s) | 113, 231, 264, 385, 828 |
| BveI | ACCTGC | 1 cut(s) | 142 |
| Cfr13I | GGNCC | 3 cut(s) | 722, 833, 834 |
| CseI | GACGC | 2 cut(s) | 419, 838 |
| CviAII | CATG | 1 cut(s) | 211 |
| DdeI | CTNAG | 5 cut(s) | 17, 116, 234, 587, 669 |
| DpnI | GATC | 5 cut(s) | 83, 108, 432, 557, 596 |
| DpnII | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| Eam1104I | CTCTTC | 2 cut(s) | 215, 839 |
| EarI | CTCTTC | 2 cut(s) | 215, 839 |
| Eco147I | AGGCCT | 1 cut(s) | 643 |
| Eco24I | GRGCYC | 2 cut(s) | 39, 837 |
| Eco32I | GATATC | 1 cut(s) | 513 |
| Eco47I | GGWCC | 1 cut(s) | 722 |
| Eco88I | CYCGRG | 1 cut(s) | 434 |
| EcoO109I | RGGNCCY | 3 cut(s) | 722, 833, 834 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 2 cut(s) | 282, 601 |
| EcoRV | GATATC | 1 cut(s) | 513 |
| EcoT38I | GRGCYC | 2 cut(s) | 39, 837 |
| FaeI | CATG | 1 cut(s) | 214 |
| FaiI | YATR | 8 cut(s) | 212, 468, 470, 517, 647, 678, 735, 755 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 728, 760 |
| FaqI | GGGAC | 3 cut(s) | 619, 795, 809 |
| FatI | CATG | 1 cut(s) | 210 |
| FauNDI | CATATG | 1 cut(s) | 468 |
| FblI | GTMKAC | 1 cut(s) | 408 |
| Fnu4HI | GCNGC | 3 cut(s) | 414, 417, 696 |
| FokI | GGATG | 2 cut(s) | 181, 214 |
| FriOI | GRGCYC | 2 cut(s) | 39, 837 |
| Fsp4HI | GCNGC | 3 cut(s) | 414, 417, 696 |
| FspBI | CTAG | 2 cut(s) | 89, 717 |
| GluI | GCNGC | 3 cut(s) | 414, 417, 696 |
| GsuI | CTGGAG | 1 cut(s) | 305 |
| HaeIII | GGCC | 2 cut(s) | 643, 835 |
| HgaI | GACGC | 2 cut(s) | 419, 838 |
| Hin1I | GRCGYC | 1 cut(s) | 353 |
| Hin1II | CATG | 1 cut(s) | 214 |
| HincII | GTYRAC | 1 cut(s) | 853 |
| HindII | GTYRAC | 1 cut(s) | 853 |
| HinfI | GANTC | 2 cut(s) | 253, 491 |
| HphI | GGTGA | 1 cut(s) | 226 |
| Hpy166II | GTNNAC | 5 cut(s) | 409, 540, 622, 742, 853 |
| Hpy188I | TCNGA | 3 cut(s) | 245, 316, 351 |
| Hpy188III | TCNNGA | 6 cut(s) | 58, 386, 434, 436, 717, 841 |
| Hpy8I | GTNNAC | 5 cut(s) | 409, 540, 622, 742, 853 |
| HpyAV | CCTTC | 2 cut(s) | 313, 847 |
| HpyCH4III | ACNGT | 3 cut(s) | 241, 610, 800 |
| HpyCH4IV | ACGT | 1 cut(s) | 353 |
| HpyCH4V | TGCA | 5 cut(s) | 113, 299, 416, 571, 771 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 296, 670, 704 |
| HpyF3I | CTNAG | 5 cut(s) | 17, 116, 234, 587, 669 |
| HpySE526I | ACGT | 1 cut(s) | 353 |
| Hsp92I | GRCGYC | 1 cut(s) | 353 |
| Hsp92II | CATG | 1 cut(s) | 214 |
| Kzo9I | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| LguI | GCTCTTC | 1 cut(s) | 839 |
| LpnPI | CCDG | 9 cut(s) | 140, 147, 184, 269, 270, 296, 391, 588, 615 |
| Lsp1109I | GCAGC | 3 cut(s) | 400, 428, 682 |
| LweI | GCATC | 1 cut(s) | 429 |
| MaeI | CTAG | 2 cut(s) | 89, 717 |
| MaeII | ACGT | 1 cut(s) | 353 |
| MaeIII | GTNAC | 2 cut(s) | 139, 354 |
| MalI | GATC | 5 cut(s) | 83, 108, 432, 557, 596 |
| MboI | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| MboII | GAAGA | 5 cut(s) | 134, 184, 232, 838, 856 |
| MfeI | CAATTG | 1 cut(s) | 776 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MhlI | GDGCHC | 3 cut(s) | 39, 393, 837 |
| MluCI | AATT | 4 cut(s) | 4, 52, 613, 776 |
| MlyI | GAGTC | 1 cut(s) | 500 |
| MmeI | TCCRAC | 1 cut(s) | 219 |
| MroXI | GAANNNNTTC | 1 cut(s) | 278 |
| MseI | TTAA | 2 cut(s) | 306, 507 |
| MslI | CAYNNNNRTG | 1 cut(s) | 215 |
| MspCI | CTTAAG | 1 cut(s) | 506 |
| MspR9I | CCNGG | 2 cut(s) | 284, 603 |
| MunI | CAATTG | 1 cut(s) | 776 |
| Mva1269I | GAATGC | 1 cut(s) | 16 |
| MvaI | CCWGG | 2 cut(s) | 284, 603 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 296, 670, 704 |
| NdeI | CATATG | 1 cut(s) | 468 |
| NdeII | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| NlaIII | CATG | 1 cut(s) | 214 |
| NlaIV | GGNNCC | 1 cut(s) | 835 |
| NmuCI | GTSAC | 2 cut(s) | 139, 354 |
| NspV | TTCGAA | 1 cut(s) | 8 |
| PaeR7I | CTCGAG | 1 cut(s) | 434 |
| PaqCI | CACCTGC | 1 cut(s) | 142 |
| PceI | AGGCCT | 1 cut(s) | 643 |
| PciSI | GCTCTTC | 1 cut(s) | 839 |
| PctI | GAATGC | 1 cut(s) | 16 |
| PdmI | GAANNNNTTC | 1 cut(s) | 278 |
| PfeI | GAWTC | 1 cut(s) | 253 |
| PfoI | TCCNGGA | 1 cut(s) | 282 |
| PkrI | GCNGC | 3 cut(s) | 415, 418, 697 |
| PleI | GAGTC | 1 cut(s) | 499 |
| PpsI | GAGTC | 1 cut(s) | 499 |
| PpuMI | RGGWCCY | 1 cut(s) | 722 |
| Psp5II | RGGWCCY | 1 cut(s) | 722 |
| Psp6I | CCWGG | 2 cut(s) | 282, 601 |
| PspGI | CCWGG | 2 cut(s) | 282, 601 |
| PspN4I | GGNNCC | 1 cut(s) | 835 |
| PspOMI | GGGCCC | 1 cut(s) | 833 |
| PspPI | GGNCC | 3 cut(s) | 722, 833, 834 |
| PspPPI | RGGWCCY | 1 cut(s) | 722 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| RseI | CAYNNNNRTG | 1 cut(s) | 215 |
| SapI | GCTCTTC | 1 cut(s) | 839 |
| SaqAI | TTAA | 2 cut(s) | 306, 507 |
| SatI | GCNGC | 3 cut(s) | 414, 417, 696 |
| Sau3AI | GATC | 5 cut(s) | 81, 106, 430, 555, 594 |
| Sau96I | GGNCC | 3 cut(s) | 722, 833, 834 |
| SchI | GAGTC | 1 cut(s) | 500 |
| ScrFI | CCNGG | 2 cut(s) | 284, 603 |
| SduI | GDGCHC | 3 cut(s) | 39, 393, 837 |
| SetI | ASST | 9 cut(s) | 136, 227, 250, 312, 356, 426, 686, 727, 741 |
| SfaNI | GCATC | 1 cut(s) | 429 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| Sfr274I | CTCGAG | 1 cut(s) | 434 |
| SfuI | TTCGAA | 1 cut(s) | 8 |
| SinI | GGWCC | 1 cut(s) | 722 |
| SlaI | CTCGAG | 1 cut(s) | 434 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 4 cut(s) | 359, 434, 488, 506 |
| SmoI | CTYRAG | 4 cut(s) | 359, 434, 488, 506 |
| Sse9I | AATT | 4 cut(s) | 4, 52, 613, 776 |
| SseBI | AGGCCT | 1 cut(s) | 643 |
| SspI | AATATT | 1 cut(s) | 703 |
| SspMI | CTAG | 2 cut(s) | 89, 717 |
| StuI | AGGCCT | 1 cut(s) | 643 |
| StyD4I | CCNGG | 2 cut(s) | 282, 601 |
| TaaI | ACNGT | 3 cut(s) | 241, 610, 800 |
| TaiI | ACGT | 1 cut(s) | 356 |
| TaqI | TCGA | 3 cut(s) | 8, 366, 435 |
| TasI | AATT | 4 cut(s) | 4, 52, 613, 776 |
| TfiI | GAWTC | 1 cut(s) | 253 |
| Tru1I | TTAA | 2 cut(s) | 306, 507 |
| Tru9I | TTAA | 2 cut(s) | 306, 507 |
| TscAI | CASTG | 5 cut(s) | 120, 238, 264, 385, 828 |
| TseFI | GTSAC | 2 cut(s) | 139, 354 |
| TseI | GCWGC | 3 cut(s) | 413, 416, 695 |
| Tsp45I | GTSAC | 2 cut(s) | 139, 354 |
| TspDTI | ATGAA | 5 cut(s) | 17, 185, 233, 455, 770 |
| TspRI | CASTG | 5 cut(s) | 120, 238, 264, 385, 828 |
| Vha464I | CTTAAG | 1 cut(s) | 506 |
| VpaK11BI | GGWCC | 1 cut(s) | 722 |
| XapI | RAATTY | 3 cut(s) | 4, 52, 613 |
| XbaI | TCTAGA | 1 cut(s) | 716 |
| XhoI | CTCGAG | 1 cut(s) | 434 |
| XmiI | GTMKAC | 1 cut(s) | 408 |
| XmnI | GAANNNNTTC | 1 cut(s) | 278 |
| XspI | CTAG | 2 cut(s) | 89, 717 |
| ZraI | GACGTC | 1 cut(s) | 354 |