gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 26 - 175 | 1.3e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 231 |
| AccB1I | GGYRCC | 1 cut(s) | 231 |
| AcuI | CTGAAG | 1 cut(s) | 11 |
| AfaI | GTAC | 1 cut(s) | 233 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 436 |
| AflIII | ACRYGT | 1 cut(s) | 544 |
| AgsI | TTSAA | 1 cut(s) | 500 |
| AluBI | AGCT | 4 cut(s) | 344, 352, 419, 433 |
| AluI | AGCT | 4 cut(s) | 344, 352, 419, 433 |
| Alw21I | GWGCWC | 1 cut(s) | 83 |
| Alw26I | GTCTC | 1 cut(s) | 158 |
| AoxI | GGCC | 1 cut(s) | 132 |
| Asp718I | GGTACC | 1 cut(s) | 231 |
| AspS9I | GGNCC | 2 cut(s) | 133, 391 |
| AsuHPI | GGTGA | 3 cut(s) | 151, 389, 451 |
| AvaII | GGWCC | 1 cut(s) | 391 |
| BanI | GGYRCC | 1 cut(s) | 231 |
| BbsI | GAAGAC | 1 cut(s) | 96 |
| Bbv12I | GWGCWC | 1 cut(s) | 83 |
| BccI | CCATC | 4 cut(s) | 124, 290, 402, 497 |
| BciVI | GTATCC | 1 cut(s) | 191 |
| BclI | TGATCA | 1 cut(s) | 379 |
| BcoDI | GTCTC | 1 cut(s) | 158 |
| BfmI | CTRYAG | 1 cut(s) | 212 |
| BfuI | GTATCC | 1 cut(s) | 191 |
| Bme18I | GGWCC | 1 cut(s) | 391 |
| BmgT120I | GGNCC | 2 cut(s) | 133, 391 |
| BmiI | GGNNCC | 1 cut(s) | 233 |
| BpiI | GAAGAC | 1 cut(s) | 96 |
| BpuEI | CTTGAG | 2 cut(s) | 67, 419 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 436 |
| Bse1I | ACTGG | 1 cut(s) | 116 |
| BseGI | GGATG | 1 cut(s) | 135 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BseMII | CTCAG | 4 cut(s) | 66, 183, 243, 367 |
| BseNI | ACTGG | 1 cut(s) | 116 |
| BseYI | CCCAGC | 1 cut(s) | 429 |
| BshFI | GGCC | 1 cut(s) | 134 |
| BshNI | GGYRCC | 1 cut(s) | 231 |
| BsiHKAI | GWGCWC | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BsmAI | GTCTC | 1 cut(s) | 158 |
| BsmI | GAATGC | 3 cut(s) | 202, 271, 309 |
| BsnI | GGCC | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 83 |
| Bsp143I | GATC | 1 cut(s) | 379 |
| BspANI | GGCC | 1 cut(s) | 134 |
| BspCNI | CTCAG | 4 cut(s) | 67, 184, 244, 366 |
| BspHI | TCATGA | 1 cut(s) | 324 |
| BspLI | GGNNCC | 1 cut(s) | 233 |
| BspMAI | CTGCAG | 1 cut(s) | 216 |
| BspT107I | GGYRCC | 1 cut(s) | 231 |
| BsrI | ACTGG | 1 cut(s) | 116 |
| BssMI | GATC | 1 cut(s) | 379 |
| Bst4CI | ACNGT | 1 cut(s) | 169 |
| Bst6I | CTCTTC | 2 cut(s) | 143, 498 |
| BstC8I | GCNNGC | 1 cut(s) | 417 |
| BstDEI | CTNAG | 7 cut(s) | 75, 99, 192, 202, 252, 353, 515 |
| BstF5I | GGATG | 1 cut(s) | 135 |
| BstKTI | GATC | 1 cut(s) | 382 |
| BstMAI | GTCTC | 1 cut(s) | 158 |
| BstMBI | GATC | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 306, 527 |
| BstNSI | RCATGY | 1 cut(s) | 548 |
| BstSFI | CTRYAG | 1 cut(s) | 212 |
| BstV2I | GAAGAC | 1 cut(s) | 96 |
| BsuI | GTATCC | 1 cut(s) | 191 |
| BsuRI | GGCC | 1 cut(s) | 134 |
| BtsCI | GGATG | 1 cut(s) | 135 |
| BtsI | GCAGTG | 1 cut(s) | 69 |
| BtsIMutI | CAGTG | 2 cut(s) | 69, 267 |
| Cac8I | GCNNGC | 1 cut(s) | 417 |
| CciI | TCATGA | 1 cut(s) | 324 |
| Cfr13I | GGNCC | 2 cut(s) | 133, 391 |
| Csp6I | GTAC | 1 cut(s) | 232 |
| CviAII | CATG | 2 cut(s) | 325, 545 |
| CviJI | RGCY | 9 cut(s) | 44, 134, 251, 344, 352, 419, 433, 472, 521 |
| CviKI_1 | RGCY | 9 cut(s) | 44, 134, 251, 344, 352, 419, 433, 472, 521 |
| CviQI | GTAC | 1 cut(s) | 232 |
| DdeI | CTNAG | 7 cut(s) | 75, 99, 192, 202, 252, 353, 515 |
| DpnI | GATC | 1 cut(s) | 381 |
| DpnII | GATC | 1 cut(s) | 379 |
| Eam1104I | CTCTTC | 2 cut(s) | 143, 498 |
| EarI | CTCTTC | 2 cut(s) | 143, 498 |
| Eco47I | GGWCC | 1 cut(s) | 391 |
| Eco57I | CTGAAG | 1 cut(s) | 11 |
| EcoT22I | ATGCAT | 1 cut(s) | 273 |
| FaeI | CATG | 2 cut(s) | 328, 548 |
| FaiI | YATR | 7 cut(s) | 8, 36, 105, 146, 269, 326, 546 |
| FatI | CATG | 2 cut(s) | 324, 544 |
| FbaI | TGATCA | 1 cut(s) | 379 |
| FokI | GGATG | 1 cut(s) | 142 |
| GsaI | CCCAGC | 1 cut(s) | 433 |
| HaeIII | GGCC | 1 cut(s) | 134 |
| Hin1II | CATG | 2 cut(s) | 328, 548 |
| HinfI | GANTC | 2 cut(s) | 239, 254 |
| HphI | GGTGA | 3 cut(s) | 151, 389, 451 |
| Hpy166II | GTNNAC | 2 cut(s) | 542, 550 |
| Hpy188I | TCNGA | 3 cut(s) | 226, 244, 356 |
| Hpy188III | TCNNGA | 3 cut(s) | 314, 325, 500 |
| Hpy8I | GTNNAC | 2 cut(s) | 542, 550 |
| HpyCH4III | ACNGT | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 3 cut(s) | 17, 214, 271 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 306, 527 |
| HpyF3I | CTNAG | 7 cut(s) | 75, 99, 192, 202, 252, 353, 515 |
| Hsp92II | CATG | 2 cut(s) | 328, 548 |
| KpnI | GGTACC | 1 cut(s) | 235 |
| Ksp22I | TGATCA | 1 cut(s) | 379 |
| Kzo9I | GATC | 1 cut(s) | 379 |
| LpnPI | CCDG | 9 cut(s) | 14, 69, 97, 198, 383, 429, 443, 467, 566 |
| MaeIII | GTNAC | 3 cut(s) | 67, 280, 439 |
| MalI | GATC | 1 cut(s) | 381 |
| MboI | GATC | 1 cut(s) | 379 |
| MboII | GAAGA | 3 cut(s) | 101, 160, 515 |
| MhlI | GDGCHC | 1 cut(s) | 83 |
| MluCI | AATT | 2 cut(s) | 383, 483 |
| MlyI | GAGTC | 2 cut(s) | 248, 263 |
| MnlI | CCTC | 4 cut(s) | 167, 321, 364, 371 |
| Mph1103I | ATGCAT | 1 cut(s) | 273 |
| MspA1I | CMGCKG | 1 cut(s) | 419 |
| Mva1269I | GAATGC | 3 cut(s) | 202, 271, 309 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 306, 527 |
| NdeII | GATC | 1 cut(s) | 379 |
| NlaIII | CATG | 2 cut(s) | 328, 548 |
| NlaIV | GGNNCC | 1 cut(s) | 233 |
| NmuCI | GTSAC | 3 cut(s) | 67, 280, 439 |
| NsiI | ATGCAT | 1 cut(s) | 273 |
| NspI | RCATGY | 1 cut(s) | 548 |
| PagI | TCATGA | 1 cut(s) | 324 |
| PciI | ACATGT | 1 cut(s) | 544 |
| PctI | GAATGC | 3 cut(s) | 202, 271, 309 |
| PleI | GAGTC | 2 cut(s) | 247, 262 |
| PpsI | GAGTC | 2 cut(s) | 247, 262 |
| PscI | ACATGT | 1 cut(s) | 544 |
| PspFI | CCCAGC | 1 cut(s) | 429 |
| PspN4I | GGNNCC | 1 cut(s) | 233 |
| PspPI | GGNCC | 2 cut(s) | 133, 391 |
| PstI | CTGCAG | 1 cut(s) | 216 |
| PvuII | CAGCTG | 1 cut(s) | 419 |
| RsaI | GTAC | 1 cut(s) | 233 |
| RsaNI | GTAC | 1 cut(s) | 232 |
| Sau3AI | GATC | 1 cut(s) | 379 |
| Sau96I | GGNCC | 2 cut(s) | 133, 391 |
| SchI | GAGTC | 2 cut(s) | 248, 263 |
| SduI | GDGCHC | 1 cut(s) | 83 |
| SfcI | CTRYAG | 1 cut(s) | 212 |
| SinI | GGWCC | 1 cut(s) | 391 |
| SmlI | CTYRAG | 2 cut(s) | 46, 434 |
| SmoI | CTYRAG | 2 cut(s) | 46, 434 |
| Sse9I | AATT | 2 cut(s) | 383, 483 |
| TaaI | ACNGT | 1 cut(s) | 169 |
| TasI | AATT | 2 cut(s) | 383, 483 |
| TscAI | CASTG | 2 cut(s) | 76, 267 |
| TseFI | GTSAC | 3 cut(s) | 67, 280, 439 |
| Tsp45I | GTSAC | 3 cut(s) | 67, 280, 439 |
| TspDTI | ATGAA | 4 cut(s) | 161, 208, 302, 492 |
| TspRI | CASTG | 2 cut(s) | 76, 267 |
| VpaK11BI | GGWCC | 1 cut(s) | 391 |
| XceI | RCATGY | 1 cut(s) | 548 |
| Zsp2I | ATGCAT | 1 cut(s) | 273 |