gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 482 |
| Acc36I | ACCTGC | 2 cut(s) | 226, 310 |
| AclWI | GGATC | 2 cut(s) | 195, 793 |
| AcsI | RAATTY | 2 cut(s) | 407, 601 |
| AcuI | CTGAAG | 1 cut(s) | 464 |
| AfaI | GTAC | 2 cut(s) | 23, 1345 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 131 |
| AflII | CTTAAG | 1 cut(s) | 1174 |
| AluBI | AGCT | 6 cut(s) | 317, 368, 448, 631, 780, 912 |
| AluI | AGCT | 6 cut(s) | 317, 368, 448, 631, 780, 912 |
| Alw21I | GWGCWC | 2 cut(s) | 438, 616 |
| AlwI | GGATC | 2 cut(s) | 195, 793 |
| ApeKI | GCWGC | 2 cut(s) | 80, 912 |
| ApoI | RAATTY | 2 cut(s) | 407, 601 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 816 |
| AspS9I | GGNCC | 1 cut(s) | 484 |
| AsuHPI | GGTGA | 3 cut(s) | 389, 1117, 1162 |
| AvaII | GGWCC | 1 cut(s) | 484 |
| AxyI | CCTNAGG | 1 cut(s) | 1237 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 545, 577 |
| Bbv12I | GWGCWC | 2 cut(s) | 438, 616 |
| BbvI | GCAGC | 2 cut(s) | 67, 899 |
| BccI | CCATC | 3 cut(s) | 169, 178, 1344 |
| BciVI | GTATCC | 1 cut(s) | 291 |
| BclI | TGATCA | 1 cut(s) | 544 |
| BfaI | CTAG | 5 cut(s) | 329, 590, 927, 1268, 1296 |
| BfrI | CTTAAG | 1 cut(s) | 1174 |
| BfuAI | ACCTGC | 2 cut(s) | 226, 310 |
| BfuI | GTATCC | 1 cut(s) | 291 |
| BisI | GCNGC | 2 cut(s) | 81, 913 |
| BlsI | GCNGC | 2 cut(s) | 82, 914 |
| Bme18I | GGWCC | 1 cut(s) | 484 |
| BmgT120I | GGNCC | 1 cut(s) | 484 |
| BmiI | GGNNCC | 2 cut(s) | 485, 486 |
| BmrI | ACTGGG | 1 cut(s) | 482 |
| BmsI | GCATC | 1 cut(s) | 487 |
| BmuI | ACTGGG | 1 cut(s) | 482 |
| Bpu10I | CCTNAGC | 3 cut(s) | 85, 318, 615 |
| BpuEI | CTTGAG | 1 cut(s) | 1388 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 131 |
| Bse1I | ACTGG | 3 cut(s) | 399, 488, 802 |
| Bse21I | CCTNAGG | 1 cut(s) | 1237 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseMII | CTCAG | 3 cut(s) | 629, 759, 1251 |
| BseNI | ACTGG | 3 cut(s) | 399, 488, 802 |
| BseXI | GCAGC | 2 cut(s) | 67, 899 |
| BsgI | GTGCAG | 2 cut(s) | 204, 898 |
| Bsh1285I | CGRYCG | 1 cut(s) | 120 |
| BsiEI | CGRYCG | 1 cut(s) | 120 |
| BsiHKAI | GWGCWC | 2 cut(s) | 438, 616 |
| BslFI | GGGAC | 1 cut(s) | 470 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BsmFI | GGGAC | 1 cut(s) | 470 |
| BsmI | GAATGC | 1 cut(s) | 900 |
| Bsp1286I | GDGCHC | 2 cut(s) | 438, 616 |
| Bsp1407I | TGTACA | 1 cut(s) | 21 |
| Bsp143I | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| BspCNI | CTCAG | 3 cut(s) | 628, 760, 1250 |
| BspLI | GGNNCC | 2 cut(s) | 485, 486 |
| BspMI | ACCTGC | 2 cut(s) | 226, 310 |
| BspPI | GGATC | 2 cut(s) | 195, 793 |
| BspTI | CTTAAG | 1 cut(s) | 1174 |
| BsrGI | TGTACA | 1 cut(s) | 21 |
| BsrI | ACTGG | 3 cut(s) | 399, 488, 802 |
| BssMI | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| Bst4CI | ACNGT | 3 cut(s) | 244, 884, 1023 |
| BstAFI | CTTAAG | 1 cut(s) | 1174 |
| BstAUI | TGTACA | 1 cut(s) | 21 |
| BstC8I | GCNNGC | 1 cut(s) | 629 |
| BstDEI | CTNAG | 8 cut(s) | 85, 104, 318, 478, 615, 768, 1237, 1340 |
| BstKTI | GATC | 6 cut(s) | 120, 190, 547, 558, 801, 1117 |
| BstMBI | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| BstMCI | CGRYCG | 1 cut(s) | 120 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 86 |
| BstNSI | RCATGY | 4 cut(s) | 309, 688, 746, 902 |
| BstV1I | GCAGC | 2 cut(s) | 67, 899 |
| BstX2I | RGATCY | 1 cut(s) | 187 |
| BstYI | RGATCY | 1 cut(s) | 187 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1237 |
| BsuI | GTATCC | 1 cut(s) | 291 |
| BtsI | GCAGTG | 1 cut(s) | 456 |
| BtsIMutI | CAGTG | 2 cut(s) | 456, 889 |
| BveI | ACCTGC | 2 cut(s) | 226, 310 |
| Cac8I | GCNNGC | 1 cut(s) | 629 |
| Cfr13I | GGNCC | 1 cut(s) | 484 |
| CseI | GACGC | 1 cut(s) | 400 |
| Csp6I | GTAC | 2 cut(s) | 22, 1344 |
| CviQI | GTAC | 2 cut(s) | 22, 1344 |
| DdeI | CTNAG | 8 cut(s) | 85, 104, 318, 478, 615, 768, 1237, 1340 |
| DpnI | GATC | 6 cut(s) | 119, 189, 546, 557, 800, 1116 |
| DpnII | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 482 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 482 |
| Eco32I | GATATC | 2 cut(s) | 290, 1208 |
| Eco47I | GGWCC | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 1 cut(s) | 464 |
| Eco81I | CCTNAGG | 1 cut(s) | 1237 |
| EcoO109I | RGGNCCY | 1 cut(s) | 484 |
| EcoRV | GATATC | 2 cut(s) | 290, 1208 |
| EcoT22I | ATGCAT | 2 cut(s) | 744, 900 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 655, 687, 1195, 1227 |
| FaqI | GGGAC | 1 cut(s) | 470 |
| FauNDI | CATATG | 3 cut(s) | 513, 608, 1348 |
| FbaI | TGATCA | 1 cut(s) | 544 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 913 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 913 |
| FspBI | CTAG | 5 cut(s) | 329, 590, 927, 1268, 1296 |
| GluI | GCNGC | 2 cut(s) | 81, 913 |
| HgaI | GACGC | 1 cut(s) | 400 |
| HincII | GTYRAC | 3 cut(s) | 282, 454, 1251 |
| HindII | GTYRAC | 3 cut(s) | 282, 454, 1251 |
| HindIII | AAGCTT | 1 cut(s) | 446 |
| HinfI | GANTC | 8 cut(s) | 332, 356, 751, 817, 872, 1127, 1376, 1388 |
| HpaI | GTTAAC | 1 cut(s) | 1251 |
| HphI | GGTGA | 3 cut(s) | 389, 1117, 1162 |
| Hpy166II | GTNNAC | 3 cut(s) | 282, 454, 1251 |
| Hpy188I | TCNGA | 3 cut(s) | 17, 361, 769 |
| Hpy188III | TCNNGA | 6 cut(s) | 191, 329, 617, 927, 1367, 1385 |
| Hpy8I | GTNNAC | 3 cut(s) | 282, 454, 1251 |
| Hpy99I | CGWCG | 1 cut(s) | 118 |
| HpyAV | CCTTC | 6 cut(s) | 31, 410, 466, 617, 988, 1391 |
| HpyCH4III | ACNGT | 3 cut(s) | 244, 884, 1023 |
| HpyCH4IV | ACGT | 3 cut(s) | 934, 941, 1042 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 86 |
| HpyF3I | CTNAG | 8 cut(s) | 85, 104, 318, 478, 615, 768, 1237, 1340 |
| HpySE526I | ACGT | 3 cut(s) | 934, 941, 1042 |
| KflI | GGGWCCC | 1 cut(s) | 484 |
| Ksp22I | TGATCA | 1 cut(s) | 544 |
| KspAI | GTTAAC | 1 cut(s) | 1251 |
| Kzo9I | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| LmnI | GCTCC | 2 cut(s) | 341, 433 |
| LpnPI | CCDG | 8 cut(s) | 231, 270, 315, 412, 501, 602, 815, 1224 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 899 |
| LweI | GCATC | 1 cut(s) | 487 |
| MaeI | CTAG | 5 cut(s) | 329, 590, 927, 1268, 1296 |
| MaeII | ACGT | 3 cut(s) | 934, 941, 1042 |
| MaeIII | GTNAC | 3 cut(s) | 308, 585, 1012 |
| MalI | GATC | 6 cut(s) | 119, 189, 546, 557, 800, 1116 |
| MboI | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| MboII | GAAGA | 4 cut(s) | 565, 1215, 1420, 1423 |
| MfeI | CAATTG | 3 cut(s) | 336, 548, 1086 |
| MflI | RGATCY | 1 cut(s) | 187 |
| MhlI | GDGCHC | 2 cut(s) | 438, 616 |
| MlyI | GAGTC | 3 cut(s) | 365, 881, 1121 |
| MnlI | CCTC | 6 cut(s) | 103, 135, 543, 613, 1088, 1246 |
| Mph1103I | ATGCAT | 2 cut(s) | 744, 900 |
| MroXI | GAANNNNTTC | 1 cut(s) | 816 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1351 |
| MspCI | CTTAAG | 1 cut(s) | 1174 |
| MunI | CAATTG | 3 cut(s) | 336, 548, 1086 |
| Mva1269I | GAATGC | 1 cut(s) | 900 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 86 |
| NdeI | CATATG | 3 cut(s) | 513, 608, 1348 |
| NdeII | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| NlaIV | GGNNCC | 2 cut(s) | 485, 486 |
| NmuCI | GTSAC | 2 cut(s) | 308, 585 |
| NsiI | ATGCAT | 2 cut(s) | 744, 900 |
| NspI | RCATGY | 4 cut(s) | 309, 688, 746, 902 |
| PctI | GAATGC | 1 cut(s) | 900 |
| PdmI | GAANNNNTTC | 1 cut(s) | 816 |
| PfeI | GAWTC | 5 cut(s) | 332, 751, 817, 1376, 1388 |
| PkrI | GCNGC | 2 cut(s) | 82, 914 |
| Ple19I | CGATCG | 1 cut(s) | 120 |
| PleI | GAGTC | 3 cut(s) | 364, 880, 1121 |
| PpsI | GAGTC | 3 cut(s) | 364, 880, 1121 |
| PpuMI | RGGWCCY | 1 cut(s) | 484 |
| Psp5II | RGGWCCY | 1 cut(s) | 484 |
| PspN4I | GGNNCC | 2 cut(s) | 485, 486 |
| PspPI | GGNCC | 1 cut(s) | 484 |
| PspPPI | RGGWCCY | 1 cut(s) | 484 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 207, 239 |
| PsuI | RGATCY | 1 cut(s) | 187 |
| PvuI | CGATCG | 1 cut(s) | 120 |
| RsaI | GTAC | 2 cut(s) | 23, 1345 |
| RsaNI | GTAC | 2 cut(s) | 22, 1344 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1351 |
| SatI | GCNGC | 2 cut(s) | 81, 913 |
| Sau3AI | GATC | 6 cut(s) | 117, 187, 544, 555, 798, 1114 |
| Sau96I | GGNCC | 1 cut(s) | 484 |
| SchI | GAGTC | 3 cut(s) | 365, 881, 1121 |
| SduI | GDGCHC | 2 cut(s) | 438, 616 |
| SfaNI | GCATC | 1 cut(s) | 487 |
| SinI | GGWCC | 1 cut(s) | 484 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1351 |
| SmlI | CTYRAG | 2 cut(s) | 1174, 1367 |
| SmoI | CTYRAG | 2 cut(s) | 1174, 1367 |
| SspI | AATATT | 2 cut(s) | 1284, 1311 |
| SspMI | CTAG | 5 cut(s) | 329, 590, 927, 1268, 1296 |
| TaaI | ACNGT | 3 cut(s) | 244, 884, 1023 |
| TaiI | ACGT | 3 cut(s) | 937, 944, 1045 |
| TaqI | TCGA | 6 cut(s) | 116, 120, 192, 239, 797, 1374 |
| TatI | WGTACW | 2 cut(s) | 21, 1343 |
| TfiI | GAWTC | 5 cut(s) | 332, 751, 817, 1376, 1388 |
| TscAI | CASTG | 2 cut(s) | 463, 889 |
| TseFI | GTSAC | 2 cut(s) | 308, 585 |
| TseI | GCWGC | 2 cut(s) | 80, 912 |
| Tsp45I | GTSAC | 2 cut(s) | 308, 585 |
| TspRI | CASTG | 2 cut(s) | 463, 889 |
| Vha464I | CTTAAG | 1 cut(s) | 1174 |
| VpaK11BI | GGWCC | 1 cut(s) | 484 |
| XapI | RAATTY | 2 cut(s) | 407, 601 |
| XbaI | TCTAGA | 2 cut(s) | 328, 926 |
| XceI | RCATGY | 4 cut(s) | 309, 688, 746, 902 |
| XmnI | GAANNNNTTC | 1 cut(s) | 816 |
| XspI | CTAG | 5 cut(s) | 329, 590, 927, 1268, 1296 |
| Zsp2I | ATGCAT | 2 cut(s) | 744, 900 |