gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 131 | 1.6e-13 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 497 |
| AcsI | RAATTY | 1 cut(s) | 293 |
| AfaI | GTAC | 2 cut(s) | 264, 490 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 530 |
| AflII | CTTAAG | 1 cut(s) | 608 |
| AgsI | TTSAA | 2 cut(s) | 346, 520 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 337 |
| AhlI | ACTAGT | 1 cut(s) | 467 |
| AjnI | CCWGG | 1 cut(s) | 369 |
| AleI | CACNNNNGTG | 1 cut(s) | 179 |
| AluBI | AGCT | 5 cut(s) | 10, 122, 136, 223, 352 |
| AluI | AGCT | 5 cut(s) | 10, 122, 136, 223, 352 |
| Alw21I | GWGCWC | 1 cut(s) | 192 |
| Alw26I | GTCTC | 2 cut(s) | 29, 203 |
| AoxI | GGCC | 1 cut(s) | 568 |
| ApoI | RAATTY | 1 cut(s) | 293 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 381 |
| AspS9I | GGNCC | 3 cut(s) | 24, 339, 568 |
| AsuHPI | GGTGA | 1 cut(s) | 145 |
| AvaII | GGWCC | 2 cut(s) | 24, 339 |
| AxyI | CCTNAGG | 1 cut(s) | 493 |
| BanI | GGYRCC | 1 cut(s) | 497 |
| Bbv12I | GWGCWC | 1 cut(s) | 192 |
| BbvCI | CCTCAGC | 1 cut(s) | 224 |
| BciT130I | CCWGG | 1 cut(s) | 371 |
| BclI | TGATCA | 1 cut(s) | 150 |
| BcoDI | GTCTC | 2 cut(s) | 29, 203 |
| BcuI | ACTAGT | 1 cut(s) | 467 |
| BfaI | CTAG | 2 cut(s) | 468, 486 |
| BfrI | CTTAAG | 1 cut(s) | 608 |
| Bme1390I | CCNGG | 1 cut(s) | 371 |
| Bme18I | GGWCC | 2 cut(s) | 24, 339 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 3 cut(s) | 24, 339, 568 |
| BmiI | GGNNCC | 2 cut(s) | 499, 640 |
| BmrFI | CCNGG | 1 cut(s) | 371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 224 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 365, 395 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 530 |
| Bse1I | ACTGG | 2 cut(s) | 133, 608 |
| Bse21I | CCTNAGG | 1 cut(s) | 493 |
| BseBI | CCWGG | 1 cut(s) | 371 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 530 |
| BseMII | CTCAG | 3 cut(s) | 87, 215, 507 |
| BseNI | ACTGG | 2 cut(s) | 133, 608 |
| BshFI | GGCC | 1 cut(s) | 570 |
| BshNI | GGYRCC | 1 cut(s) | 497 |
| BsiHKAI | GWGCWC | 1 cut(s) | 192 |
| BslFI | GGGAC | 2 cut(s) | 38, 614 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 530 |
| BsmAI | GTCTC | 2 cut(s) | 29, 203 |
| BsmFI | GGGAC | 2 cut(s) | 38, 614 |
| BsnI | GGCC | 1 cut(s) | 570 |
| Bsp1286I | GDGCHC | 1 cut(s) | 192 |
| Bsp143I | GATC | 2 cut(s) | 150, 472 |
| BspANI | GGCC | 1 cut(s) | 570 |
| BspCNI | CTCAG | 3 cut(s) | 88, 216, 506 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 2 cut(s) | 499, 640 |
| BspT107I | GGYRCC | 1 cut(s) | 497 |
| BspTI | CTTAAG | 1 cut(s) | 608 |
| BsrI | ACTGG | 2 cut(s) | 133, 608 |
| BssMI | GATC | 2 cut(s) | 150, 472 |
| Bst2UI | CCWGG | 1 cut(s) | 371 |
| Bst4CI | ACNGT | 1 cut(s) | 40 |
| Bst6I | CTCTTC | 3 cut(s) | 372, 572, 608 |
| BstAFI | CTTAAG | 1 cut(s) | 608 |
| BstDEI | CTNAG | 5 cut(s) | 6, 96, 224, 493, 591 |
| BstKTI | GATC | 2 cut(s) | 153, 475 |
| BstMAI | GTCTC | 2 cut(s) | 29, 203 |
| BstMBI | GATC | 2 cut(s) | 150, 472 |
| BstNI | CCWGG | 1 cut(s) | 371 |
| BstSCI | CCNGG | 1 cut(s) | 369 |
| Bsu36I | CCTNAGG | 1 cut(s) | 493 |
| BsuRI | GGCC | 1 cut(s) | 570 |
| CciI | TCATGA | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 3 cut(s) | 24, 339, 568 |
| Csp6I | GTAC | 2 cut(s) | 263, 489 |
| CviAII | CATG | 6 cut(s) | 28, 157, 196, 268, 435, 574 |
| CviQI | GTAC | 2 cut(s) | 263, 489 |
| DdeI | CTNAG | 5 cut(s) | 6, 96, 224, 493, 591 |
| DpnI | GATC | 2 cut(s) | 152, 474 |
| DpnII | GATC | 2 cut(s) | 150, 472 |
| DraI | TTTAAA | 2 cut(s) | 445, 544 |
| DriI | GACNNNNNGTC | 1 cut(s) | 337 |
| Eam1104I | CTCTTC | 3 cut(s) | 372, 572, 608 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 337 |
| EarI | CTCTTC | 3 cut(s) | 372, 572, 608 |
| Eco47I | GGWCC | 2 cut(s) | 24, 339 |
| Eco81I | CCTNAGG | 1 cut(s) | 493 |
| EcoRII | CCWGG | 1 cut(s) | 369 |
| FaeI | CATG | 6 cut(s) | 31, 160, 199, 271, 438, 577 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 326, 358 |
| FaqI | GGGAC | 2 cut(s) | 38, 614 |
| FatI | CATG | 6 cut(s) | 27, 156, 195, 267, 434, 573 |
| FbaI | TGATCA | 1 cut(s) | 150 |
| FspBI | CTAG | 2 cut(s) | 468, 486 |
| HaeIII | GGCC | 1 cut(s) | 570 |
| Hin1II | CATG | 6 cut(s) | 31, 160, 199, 271, 438, 577 |
| HinfI | GANTC | 2 cut(s) | 143, 170 |
| HphI | GGTGA | 1 cut(s) | 145 |
| Hpy166II | GTNNAC | 2 cut(s) | 265, 406 |
| Hpy188I | TCNGA | 1 cut(s) | 97 |
| Hpy188III | TCNNGA | 3 cut(s) | 19, 107, 196 |
| Hpy8I | GTNNAC | 2 cut(s) | 265, 406 |
| HpyAV | CCTTC | 3 cut(s) | 56, 448, 556 |
| HpyCH4III | ACNGT | 1 cut(s) | 40 |
| HpyCH4V | TGCA | 2 cut(s) | 160, 235 |
| HpyF3I | CTNAG | 5 cut(s) | 6, 96, 224, 493, 591 |
| Hsp92II | CATG | 6 cut(s) | 31, 160, 199, 271, 438, 577 |
| Ksp22I | TGATCA | 1 cut(s) | 150 |
| Kzo9I | GATC | 2 cut(s) | 150, 472 |
| LmnI | GCTCC | 1 cut(s) | 187 |
| MaeI | CTAG | 2 cut(s) | 468, 486 |
| MalI | GATC | 2 cut(s) | 152, 474 |
| MboI | GATC | 2 cut(s) | 150, 472 |
| MboII | GAAGA | 5 cut(s) | 389, 430, 463, 589, 625 |
| MfeI | CAATTG | 2 cut(s) | 243, 507 |
| MhlI | GDGCHC | 1 cut(s) | 192 |
| MluCI | AATT | 4 cut(s) | 243, 254, 293, 507 |
| MroXI | GAANNNNTTC | 1 cut(s) | 381 |
| MseI | TTAA | 3 cut(s) | 444, 543, 609 |
| MslI | CAYNNNNRTG | 2 cut(s) | 179, 200 |
| MspCI | CTTAAG | 1 cut(s) | 608 |
| MspR9I | CCNGG | 1 cut(s) | 371 |
| MunI | CAATTG | 2 cut(s) | 243, 507 |
| MvaI | CCWGG | 1 cut(s) | 371 |
| NdeII | GATC | 2 cut(s) | 150, 472 |
| NlaIII | CATG | 6 cut(s) | 31, 160, 199, 271, 438, 577 |
| NlaIV | GGNNCC | 2 cut(s) | 499, 640 |
| OliI | CACNNNNGTG | 1 cut(s) | 179 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 381 |
| PfeI | GAWTC | 2 cut(s) | 143, 170 |
| PfoI | TCCNGGA | 1 cut(s) | 369 |
| Psp6I | CCWGG | 1 cut(s) | 369 |
| PspGI | CCWGG | 1 cut(s) | 369 |
| PspN4I | GGNNCC | 2 cut(s) | 499, 640 |
| PspPI | GGNCC | 3 cut(s) | 24, 339, 568 |
| RsaI | GTAC | 2 cut(s) | 264, 490 |
| RsaNI | GTAC | 2 cut(s) | 263, 489 |
| RseI | CAYNNNNRTG | 2 cut(s) | 179, 200 |
| SaqAI | TTAA | 3 cut(s) | 444, 543, 609 |
| Sau3AI | GATC | 2 cut(s) | 150, 472 |
| Sau96I | GGNCC | 3 cut(s) | 24, 339, 568 |
| ScrFI | CCNGG | 1 cut(s) | 371 |
| SduI | GDGCHC | 1 cut(s) | 192 |
| SinI | GGWCC | 2 cut(s) | 24, 339 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 179, 200 |
| SmlI | CTYRAG | 1 cut(s) | 608 |
| SmoI | CTYRAG | 1 cut(s) | 608 |
| SpeI | ACTAGT | 1 cut(s) | 467 |
| Sse9I | AATT | 4 cut(s) | 243, 254, 293, 507 |
| SspMI | CTAG | 2 cut(s) | 468, 486 |
| StyD4I | CCNGG | 1 cut(s) | 369 |
| TaaI | ACNGT | 1 cut(s) | 40 |
| TasI | AATT | 4 cut(s) | 243, 254, 293, 507 |
| TatI | WGTACW | 1 cut(s) | 262 |
| TfiI | GAWTC | 2 cut(s) | 143, 170 |
| Tru1I | TTAA | 3 cut(s) | 444, 543, 609 |
| Tru9I | TTAA | 3 cut(s) | 444, 543, 609 |
| TspDTI | ATGAA | 4 cut(s) | 75, 212, 247, 590 |
| Vha464I | CTTAAG | 1 cut(s) | 608 |
| VpaK11BI | GGWCC | 2 cut(s) | 24, 339 |
| XapI | RAATTY | 1 cut(s) | 293 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 508 |
| XmnI | GAANNNNTTC | 1 cut(s) | 381 |
| XspI | CTAG | 2 cut(s) | 468, 486 |