gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 47 - 193 | 4.3e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 549 |
| AccB1I | GGYRCC | 1 cut(s) | 830 |
| AciI | CCGC | 1 cut(s) | 687 |
| AclWI | GGATC | 3 cut(s) | 425, 572, 703 |
| AcsI | RAATTY | 4 cut(s) | 63, 322, 341, 665 |
| AfaI | GTAC | 2 cut(s) | 133, 444 |
| AgsI | TTSAA | 5 cut(s) | 17, 322, 340, 379, 736 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 9, 41 |
| AluBI | AGCT | 6 cut(s) | 95, 140, 206, 251, 428, 484 |
| AluI | AGCT | 6 cut(s) | 95, 140, 206, 251, 428, 484 |
| Alw21I | GWGCWC | 1 cut(s) | 372 |
| Alw26I | GTCTC | 1 cut(s) | 465 |
| AlwI | GGATC | 3 cut(s) | 425, 572, 703 |
| ApoI | RAATTY | 4 cut(s) | 63, 322, 341, 665 |
| AspLEI | GCGC | 1 cut(s) | 550 |
| AsuHPI | GGTGA | 2 cut(s) | 118, 626 |
| BaeGI | GKGCMC | 1 cut(s) | 833 |
| BanI | GGYRCC | 1 cut(s) | 830 |
| BanII | GRGCYC | 1 cut(s) | 680 |
| BbsI | GAAGAC | 2 cut(s) | 639, 724 |
| Bbv12I | GWGCWC | 1 cut(s) | 372 |
| BccI | CCATC | 2 cut(s) | 341, 789 |
| BclI | TGATCA | 1 cut(s) | 123 |
| BcoDI | GTCTC | 1 cut(s) | 465 |
| BfaI | CTAG | 6 cut(s) | 59, 71, 135, 440, 605, 690 |
| BfmI | CTRYAG | 3 cut(s) | 252, 270, 423 |
| BmcAI | AGTACT | 1 cut(s) | 133 |
| BmiI | GGNNCC | 1 cut(s) | 832 |
| BmsI | GCATC | 1 cut(s) | 772 |
| BpiI | GAAGAC | 2 cut(s) | 639, 724 |
| BpuEI | CTTGAG | 1 cut(s) | 284 |
| Bse1I | ACTGG | 2 cut(s) | 113, 129 |
| BseGI | GGATG | 1 cut(s) | 800 |
| BseMII | CTCAG | 2 cut(s) | 112, 485 |
| BseNI | ACTGG | 2 cut(s) | 113, 129 |
| BseRI | GAGGAG | 2 cut(s) | 290, 459 |
| BseSI | GKGCMC | 1 cut(s) | 833 |
| BshNI | GGYRCC | 1 cut(s) | 830 |
| BsiHKAI | GWGCWC | 1 cut(s) | 372 |
| BslFI | GGGAC | 2 cut(s) | 179, 403 |
| BsmAI | GTCTC | 1 cut(s) | 465 |
| BsmFI | GGGAC | 2 cut(s) | 179, 403 |
| Bsp1286I | GDGCHC | 3 cut(s) | 372, 680, 833 |
| Bsp143I | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| BspACI | CCGC | 1 cut(s) | 687 |
| BspCNI | CTCAG | 2 cut(s) | 111, 484 |
| BspLI | GGNNCC | 1 cut(s) | 832 |
| BspPI | GGATC | 3 cut(s) | 425, 572, 703 |
| BspT107I | GGYRCC | 1 cut(s) | 830 |
| BsrI | ACTGG | 2 cut(s) | 113, 129 |
| BssMI | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| Bst4CI | ACNGT | 5 cut(s) | 240, 598, 631, 730, 779 |
| Bst6I | CTCTTC | 1 cut(s) | 549 |
| BstDEI | CTNAG | 3 cut(s) | 91, 98, 471 |
| BstF5I | GGATG | 1 cut(s) | 800 |
| BstHHI | GCGC | 1 cut(s) | 550 |
| BstKTI | GATC | 5 cut(s) | 126, 433, 453, 567, 698 |
| BstMAI | GTCTC | 1 cut(s) | 465 |
| BstMBI | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| BstSFI | CTRYAG | 3 cut(s) | 252, 270, 423 |
| BstSLI | GKGCMC | 1 cut(s) | 833 |
| BstV2I | GAAGAC | 2 cut(s) | 639, 724 |
| BstX2I | RGATCY | 1 cut(s) | 695 |
| BstYI | RGATCY | 1 cut(s) | 695 |
| BtsCI | GGATG | 1 cut(s) | 800 |
| BtsI | GCAGTG | 1 cut(s) | 370 |
| BtsIMutI | CAGTG | 3 cut(s) | 236, 370, 704 |
| CfoI | GCGC | 1 cut(s) | 550 |
| Csp6I | GTAC | 2 cut(s) | 132, 443 |
| CviAII | CATG | 1 cut(s) | 448 |
| CviQI | GTAC | 2 cut(s) | 132, 443 |
| DdeI | CTNAG | 3 cut(s) | 91, 98, 471 |
| DpnI | GATC | 5 cut(s) | 125, 432, 452, 566, 697 |
| DpnII | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| Eam1104I | CTCTTC | 1 cut(s) | 549 |
| EarI | CTCTTC | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 1 cut(s) | 680 |
| EcoRI | GAATTC | 1 cut(s) | 322 |
| EcoT38I | GRGCYC | 1 cut(s) | 680 |
| FaeI | CATG | 1 cut(s) | 451 |
| FaqI | GGGAC | 2 cut(s) | 179, 403 |
| FatI | CATG | 1 cut(s) | 447 |
| FbaI | TGATCA | 1 cut(s) | 123 |
| FokI | GGATG | 1 cut(s) | 807 |
| FriOI | GRGCYC | 1 cut(s) | 680 |
| FspBI | CTAG | 6 cut(s) | 59, 71, 135, 440, 605, 690 |
| FspI | TGCGCA | 1 cut(s) | 549 |
| GlaI | GCGC | 1 cut(s) | 549 |
| HhaI | GCGC | 1 cut(s) | 550 |
| Hin1II | CATG | 1 cut(s) | 451 |
| Hin6I | GCGC | 1 cut(s) | 548 |
| HinP1I | GCGC | 1 cut(s) | 548 |
| HinfI | GANTC | 4 cut(s) | 232, 416, 721, 814 |
| HphI | GGTGA | 2 cut(s) | 118, 626 |
| Hpy166II | GTNNAC | 3 cut(s) | 445, 601, 634 |
| Hpy188I | TCNGA | 2 cut(s) | 101, 768 |
| Hpy188III | TCNNGA | 3 cut(s) | 263, 454, 568 |
| Hpy8I | GTNNAC | 3 cut(s) | 445, 601, 634 |
| HpyAV | CCTTC | 1 cut(s) | 817 |
| HpyCH4III | ACNGT | 5 cut(s) | 240, 598, 631, 730, 779 |
| HpyCH4V | TGCA | 1 cut(s) | 199 |
| HpyF3I | CTNAG | 3 cut(s) | 91, 98, 471 |
| Hsp92II | CATG | 1 cut(s) | 451 |
| HspAI | GCGC | 1 cut(s) | 548 |
| Ksp22I | TGATCA | 1 cut(s) | 123 |
| Kzo9I | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| LpnPI | CCDG | 3 cut(s) | 121, 126, 142 |
| LweI | GCATC | 1 cut(s) | 772 |
| MaeI | CTAG | 6 cut(s) | 59, 71, 135, 440, 605, 690 |
| MaeIII | GTNAC | 1 cut(s) | 779 |
| MalI | GATC | 5 cut(s) | 125, 432, 452, 566, 697 |
| MboI | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| MboII | GAAGA | 5 cut(s) | 61, 391, 566, 639, 724 |
| MflI | RGATCY | 1 cut(s) | 695 |
| MhlI | GDGCHC | 3 cut(s) | 372, 680, 833 |
| MluCI | AATT | 7 cut(s) | 34, 63, 192, 322, 341, 652, 665 |
| MlyI | GAGTC | 1 cut(s) | 425 |
| MmeI | TCCRAC | 1 cut(s) | 749 |
| MnlI | CCTC | 9 cut(s) | 17, 221, 259, 268, 477, 480, 610, 686, 820 |
| MseI | TTAA | 1 cut(s) | 39 |
| NdeII | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| NlaIII | CATG | 1 cut(s) | 451 |
| NlaIV | GGNNCC | 1 cut(s) | 832 |
| NmuCI | GTSAC | 1 cut(s) | 779 |
| NsbI | TGCGCA | 1 cut(s) | 549 |
| PfeI | GAWTC | 3 cut(s) | 232, 721, 814 |
| PleI | GAGTC | 1 cut(s) | 424 |
| PpsI | GAGTC | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 1 cut(s) | 832 |
| PsuI | RGATCY | 1 cut(s) | 695 |
| RsaI | GTAC | 2 cut(s) | 133, 444 |
| RsaNI | GTAC | 2 cut(s) | 132, 443 |
| SaqAI | TTAA | 1 cut(s) | 39 |
| Sau3AI | GATC | 5 cut(s) | 123, 430, 450, 564, 695 |
| ScaI | AGTACT | 1 cut(s) | 133 |
| SchI | GAGTC | 1 cut(s) | 425 |
| SduI | GDGCHC | 3 cut(s) | 372, 680, 833 |
| SfaNI | GCATC | 1 cut(s) | 772 |
| SfcI | CTRYAG | 3 cut(s) | 252, 270, 423 |
| SmlI | CTYRAG | 1 cut(s) | 263 |
| SmoI | CTYRAG | 1 cut(s) | 263 |
| Sse9I | AATT | 7 cut(s) | 34, 63, 192, 322, 341, 652, 665 |
| SsiI | CCGC | 1 cut(s) | 687 |
| SspMI | CTAG | 6 cut(s) | 59, 71, 135, 440, 605, 690 |
| TaaI | ACNGT | 5 cut(s) | 240, 598, 631, 730, 779 |
| TaqI | TCGA | 1 cut(s) | 539 |
| TasI | AATT | 7 cut(s) | 34, 63, 192, 322, 341, 652, 665 |
| TatI | WGTACW | 2 cut(s) | 131, 442 |
| TfiI | GAWTC | 3 cut(s) | 232, 721, 814 |
| Tru1I | TTAA | 1 cut(s) | 39 |
| Tru9I | TTAA | 1 cut(s) | 39 |
| TscAI | CASTG | 3 cut(s) | 243, 377, 711 |
| TseFI | GTSAC | 1 cut(s) | 779 |
| Tsp45I | GTSAC | 1 cut(s) | 779 |
| TspDTI | ATGAA | 3 cut(s) | 17, 645, 806 |
| TspRI | CASTG | 3 cut(s) | 243, 377, 711 |
| XapI | RAATTY | 4 cut(s) | 63, 322, 341, 665 |
| XspI | CTAG | 6 cut(s) | 59, 71, 135, 440, 605, 690 |
| ZrmI | AGTACT | 1 cut(s) | 133 |