Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004208.1

Orthogroup ID

OG0000077

Physical Location & Seq

Genomic Coordinates Forward (+)

77788 .. 78111

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004208.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgaacaactcaggactaagtttagctaccatcgagccactcaatggacacaactttaagaagtggaggtctgatattgagctgtacctggggttgaacaatattgataattgtttaaccgaagaggcgcctgtgatcactaatgcgagcacagcccaggataggatgaagtctattgagtggattagagccaataggatgtctctgttgattatgaaaaggcttatgagtgatgctgtgaagggtagcttcccagatgtttggacccaaaatgagcattttggcctgacaaggcacgtcttggagaaattgagccaatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

107

Amino Acids

12.22

Weight (kDa)

6.82

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53670
fragaria_vesca	FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica	MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica	Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis	pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis	RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata	RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora	Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii	Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa	Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha	Rh3BG243300 Rh4BG398100
rosa_wichuraiana	Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	44, 162
AgsI	TTSAA	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	87, 156
AluBI	AGCT	3 cut(s)	26, 82, 249
AluI	AGCT	3 cut(s)	26, 82, 249
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	152
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	89, 158
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	89, 158
Bme18I	GGWCC	1 cut(s)	264
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	129, 266
BmrFI	CCNGG	2 cut(s)	89, 158
BmsI	GCATC	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	88, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 162
BseBI	CCWGG	2 cut(s)	89, 158
BseDI	CCNNGG	2 cut(s)	88, 156
BseGI	GGATG	2 cut(s)	171, 204
BseLI	CCNNNNNNNGG	2 cut(s)	44, 162
BseMII	CTCAG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	44, 162
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	129, 266
BspT107I	GGYRCC	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	88, 156
BssMI	GATC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	89, 158
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	10, 17
BstF5I	GGATG	2 cut(s)	171, 204
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	89, 158
BstSCI	CCNGG	2 cut(s)	87, 156
BstXI	CCANNNNNNTGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	171, 204
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	85
CviJI	RGCY	9 cut(s)	26, 37, 82, 155, 191, 223, 249, 285, 315
CviKI_1	RGCY	9 cut(s)	26, 37, 82, 155, 191, 223, 249, 285, 315
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	10, 17
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	87, 156
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
FaiI	YATR	2 cut(s)	215, 227
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FbaI	TGATCA	1 cut(s)	135
FokI	GGATG	2 cut(s)	178, 211
GlaI	GCGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	10, 17
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	128
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	135
LpnPI	CCDG	7 cut(s)	74, 101, 143, 144, 170, 267, 299
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	297
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	109, 308
Mly113I	GGCGCC	1 cut(s)	128
MnlI	CCTC	2 cut(s)	60, 118
MseI	TTAA	2 cut(s)	57, 116
MspR9I	CCNGG	2 cut(s)	89, 158
MvaI	CCWGG	2 cut(s)	89, 158
MwoI	GCNNNNNNNGC	1 cut(s)	152
NarI	GGCGCC	1 cut(s)	128
NdeII	GATC	1 cut(s)	135
NlaIV	GGNNCC	2 cut(s)	129, 266
PflMI	CCANNNNNTGG	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	87, 156
PspGI	CCWGG	2 cut(s)	87, 156
PspN4I	GGNNCC	2 cut(s)	129, 266
PspPI	GGNCC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	57, 116
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	89, 158
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	6 cut(s)	28, 71, 84, 90, 251, 300
SfaNI	GCATC	1 cut(s)	223
SfoI	GGCGCC	1 cut(s)	129
SinI	GGWCC	1 cut(s)	264
Sse9I	AATT	2 cut(s)	109, 308
SspDI	GGCGCC	1 cut(s)	127
SspI	AATATT	1 cut(s)	103
StyD4I	CCNGG	2 cut(s)	87, 156
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	109, 308
Tru1I	TTAA	2 cut(s)	57, 116
Tru9I	TTAA	2 cut(s)	57, 116
TspDTI	ATGAA	3 cut(s)	17, 182, 230
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.