pycom11g20370

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
23301917 .. 23303278
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20370.1

Sequence Viewer

Length: 1362 bp
ATGACTACCTTGACAACTCTGAAATATCATGGGAAAGGCACTGTCAGAGAACACATTCTGAAGCTAGTGGAGGCTGCTGCGAAGCTAACAGACCTGGAGGTTCCCATTGATGATGCTTTTGTTGTTCATATGGCCCTTAATTCCCTCCCAGATGCATATGAACAACTGAAGACGTCATACAACACACAAAAGGAGAAGTGGAGTCTGAATGATCTCATTTCCATATGTGTTCAAGAAGAAAGCAGGATCAAAAGGGTGTCAAATGAAACAGTGAATTTCATAAAGGCAGAGACTACGAGGAAAACTATCTCGACATCTGGTAAGCCATATAAACCTTTTTCCTATTCTCATGCTGCTGGAAATGATACTCCATCATCCTCCAAGGGATCTCAAGGTTTTAAAGGCAACATTGAAAATATTAAATGTTATTTCTGCAAAGAATTTGGTCACTTGAAGAGGGACTGTGAAAAACGAAAGAAATGGGCACCTAAGAAAGGTAATAAAATTGAAAATGTTTTTGTCTGTGTTAATGTTAATCTTGTTGAAATCCCTCCAAATTCTTGGTGGTTTGACACTGGTTGTTCGGTGCATATTACCAATTCTTTGCAGGGGTTCACAAGAAGGGAAATTTCAAGAAATGAGGTCTATGATGTCCACGTTGGGGATGGGAATAAAGTAGTTGTGGAGGCAATAGGCACCCTAAAGCTCAAGTTGTCAAGTGGTTTCGTTTTACAGTTGCTAGATGTTCTTTATGTTCCTAGGTTAACTAGAAGTTTAATTTCTGCTTCAAAGCTTGTAAAAGACGGTTATGTTTTTGTTGGGGATGATGAAAGTGTACGGATTTATAAGAAAAGTAATATGAATCTTTTGCTTGGTATTTGTTTTTTAAACAATGATCTTTGGAGGATGAATTGTCAAGTAATGTTAAATTCAAAATGTTTGACAGTGGAATCAAATTTATCTTTGAAAAGGTCTCTGACTAATGAAGGGTCTTCAATGCTTTGGCATAGAAGGCTTGGACATATTAACAAGCAAAGATTAGAAATTCTGGTTAAAGAACAAATGCTTCCAACGTTGGATTTTAATGATATGCAAAATTGTATTGACTGTTGGAAAGGGAAATTAACAAACACAAGGAAAATTGGTTCCACAAGAAGTCTTAACCTCTTAGAAGTCGTCCATTCAGATGTTTGTGGACCTTTCTCCACGCAAACAATCTGCAAAAATGCCTATTTTGTGTCTTTCATTGATGATTTTTCTCGATATGCATATGTATATCTTATATCCGAGAAAAATCAAGTGTTTGATTGTTTTAAAAATTTCAAAAATGAAGTGGAAAGACAACTAGAAAAGAGAAATTAA

Protein Analysis

454

Amino Acids

51.8

Weight (kDa)

9.1

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 3 - 85 2.3e-12 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 188 - 270 1.9e-17 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 324 - 374 8.2e-14 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 846
AatII GACGTC 1 cut(s) 176
AccB1I GGYRCC 2 cut(s) 484, 695
AclI AACGTT 1 cut(s) 1073
AclWI GGATC 2 cut(s) 254, 394
AcsI RAATTY 8 cut(s) 274, 440, 556, 627, 928, 955, 1044, 1318
AcuI CTGAAG 2 cut(s) 80, 188
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 1 cut(s) 837
AfiI CCNNNNNNNGG 2 cut(s) 494, 661
AjnI CCWGG 1 cut(s) 93
AloI GAACNNNNNNTCC 2 cut(s) 1129, 1161
AluBI AGCT 4 cut(s) 64, 85, 706, 793
AluI AGCT 4 cut(s) 64, 85, 706, 793
Alw26I GTCTC 2 cut(s) 284, 978
AlwI GGATC 2 cut(s) 254, 394
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 74, 77, 353
ApoI RAATTY 8 cut(s) 274, 440, 556, 627, 928, 955, 1044, 1318
Asp700I GAANNNNTTC 1 cut(s) 54
AspA2I CCTAGG 1 cut(s) 758
AspS9I GGNCC 2 cut(s) 133, 1196
AvaII GGWCC 1 cut(s) 1196
AvrII CCTAGG 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 487
BanI GGYRCC 2 cut(s) 484, 695
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BbsI GAAGAC 2 cut(s) 176, 984
BbvI GCAGC 3 cut(s) 61, 64, 340
BccI CCATC 2 cut(s) 379, 659
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 284, 978
BfaI CTAG 5 cut(s) 65, 740, 759, 768, 1346
BisI GCNGC 3 cut(s) 75, 78, 354
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 3 cut(s) 76, 79, 355
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 1196
BmgT120I GGNCC 2 cut(s) 133, 1196
BmiI GGNNCC 4 cut(s) 102, 486, 697, 1147
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 103, 142
BpiI GAAGAC 2 cut(s) 176, 984
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 375, 692
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 978
BsaJI CCNNGG 2 cut(s) 381, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 494, 661
Bse1I ACTGG 1 cut(s) 580
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 381, 758
BseGI GGATG 4 cut(s) 374, 670, 829, 912
BseLI CCNNNNNNNGG 2 cut(s) 494, 661
BseNI ACTGG 1 cut(s) 580
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 3 cut(s) 61, 64, 340
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 2 cut(s) 484, 695
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 2 cut(s) 494, 661
BsmAI GTCTC 2 cut(s) 284, 978
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 978
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 4 cut(s) 211, 246, 386, 895
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 4 cut(s) 102, 486, 697, 1147
BspPI GGATC 2 cut(s) 254, 394
BspT107I GGYRCC 2 cut(s) 484, 695
BspTNI GGTCTC 1 cut(s) 978
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 381, 758
BssMI GATC 4 cut(s) 211, 246, 386, 895
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 381, 758
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 7 cut(s) 43, 271, 464, 735, 806, 946, 1109
Bst6I CTCTTC 1 cut(s) 449
BstACI GRCGYC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 489, 1168
BstENI CCTNNNNNAGG 1 cut(s) 492
BstF5I GGATG 4 cut(s) 374, 670, 829, 912
BstKTI GATC 4 cut(s) 214, 249, 389, 898
BstMAI GTCTC 2 cut(s) 284, 978
BstMBI GATC 4 cut(s) 211, 246, 386, 895
BstMWI GCNNNNNNNGC 1 cut(s) 1012
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 3 cut(s) 61, 64, 340
BstV2I GAAGAC 2 cut(s) 176, 984
BstX2I RGATCY 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 561
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 4 cut(s) 374, 670, 829, 912
BtsIMutI CAGTG 4 cut(s) 39, 276, 573, 951
Cfr13I GGNCC 2 cut(s) 133, 1196
Csp6I GTAC 1 cut(s) 836
CviAII CATG 2 cut(s) 29, 350
CviJI RGCY 8 cut(s) 64, 74, 85, 134, 325, 706, 793, 1015
CviKI_1 RGCY 8 cut(s) 64, 74, 85, 134, 325, 706, 793, 1015
CviQI GTAC 1 cut(s) 836
DdeI CTNAG 2 cut(s) 489, 1168
DpnI GATC 4 cut(s) 213, 248, 388, 897
DpnII GATC 4 cut(s) 211, 246, 386, 895
DraI TTTAAA 3 cut(s) 400, 888, 1315
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco130I CCWWGG 2 cut(s) 381, 758
Eco31I GGTCTC 1 cut(s) 978
Eco47I GGWCC 1 cut(s) 1196
Eco57I CTGAAG 2 cut(s) 80, 188
EcoNI CCTNNNNNAGG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 2 cut(s) 381, 758
EcoT22I ATGCAT 2 cut(s) 157, 1270
ErhI CCWWGG 2 cut(s) 381, 758
FaeI CATG 2 cut(s) 32, 353
FaqI GGGAC 1 cut(s) 473
FatI CATG 2 cut(s) 28, 349
FauNDI CATATG 4 cut(s) 129, 157, 224, 1270
Fnu4HI GCNGC 3 cut(s) 75, 78, 354
FokI GGATG 4 cut(s) 361, 677, 836, 919
Fsp4HI GCNGC 3 cut(s) 75, 78, 354
FspBI CTAG 5 cut(s) 65, 740, 759, 768, 1346
GluI GCNGC 3 cut(s) 75, 78, 354
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 2 cut(s) 32, 353
HincII GTYRAC 1 cut(s) 765
HindII GTYRAC 1 cut(s) 765
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 3 cut(s) 202, 862, 950
HpaI GTTAAC 1 cut(s) 765
Hpy166II GTNNAC 5 cut(s) 615, 655, 765, 836, 1196
Hpy188I TCNGA 7 cut(s) 21, 47, 60, 207, 978, 1186, 1288
Hpy188III TCNNGA 4 cut(s) 233, 310, 633, 1260
Hpy8I GTNNAC 5 cut(s) 615, 655, 765, 836, 1196
HpyAV CCTTC 3 cut(s) 615, 980, 1005
HpyCH4III ACNGT 7 cut(s) 43, 271, 464, 735, 806, 946, 1109
HpyCH4IV ACGT 3 cut(s) 173, 657, 1073
HpyCH4V TGCA 7 cut(s) 155, 435, 589, 607, 1093, 1221, 1268
HpyF10VI GCNNNNNNNGC 1 cut(s) 1012
HpyF3I CTNAG 2 cut(s) 489, 1168
HpySE526I ACGT 3 cut(s) 173, 657, 1073
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 32, 353
KspAI GTTAAC 1 cut(s) 765
Kzo9I GATC 4 cut(s) 211, 246, 386, 895
LpnPI CCDG 9 cut(s) 80, 107, 162, 229, 303, 342, 561, 593, 1034
Lsp1109I GCAGC 3 cut(s) 61, 64, 340
LweI GCATC 2 cut(s) 103, 142
MaeI CTAG 5 cut(s) 65, 740, 759, 768, 1346
MaeII ACGT 3 cut(s) 173, 657, 1073
MaeIII GTNAC 1 cut(s) 446
MalI GATC 4 cut(s) 213, 248, 388, 897
MboI GATC 4 cut(s) 211, 246, 386, 895
MboII GAAGA 4 cut(s) 181, 248, 466, 984
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 487
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 3 cut(s) 1056, 1091, 1094
Mph1103I ATGCAT 2 cut(s) 157, 1270
MroXI GAANNNNTTC 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 1185
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 1012
NdeI CATATG 4 cut(s) 129, 157, 224, 1270
NdeII GATC 4 cut(s) 211, 246, 386, 895
NlaIII CATG 2 cut(s) 32, 353
NlaIV GGNNCC 4 cut(s) 102, 486, 697, 1147
NmuCI GTSAC 1 cut(s) 446
NsiI ATGCAT 2 cut(s) 157, 1270
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 862, 950
PkrI GCNGC 3 cut(s) 76, 79, 355
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PsiI TTATAA 1 cut(s) 846
Psp1406I AACGTT 1 cut(s) 1073
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 4 cut(s) 102, 486, 697, 1147
PspPI GGNCC 2 cut(s) 133, 1196
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 1 cut(s) 837
RsaNI GTAC 1 cut(s) 836
RseI CAYNNNNRTG 1 cut(s) 1185
SatI GCNGC 3 cut(s) 75, 78, 354
Sau3AI GATC 4 cut(s) 211, 246, 386, 895
Sau96I GGNCC 2 cut(s) 133, 1196
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 487
SfaNI GCATC 2 cut(s) 103, 142
SinI GGWCC 1 cut(s) 1196
SmiMI CAYNNNNRTG 1 cut(s) 1185
SmlI CTYRAG 2 cut(s) 390, 707
SmoI CTYRAG 2 cut(s) 390, 707
SspI AATATT 1 cut(s) 418
SspMI CTAG 5 cut(s) 65, 740, 759, 768, 1346
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 2 cut(s) 381, 758
TaaI ACNGT 7 cut(s) 43, 271, 464, 735, 806, 946, 1109
TaiI ACGT 3 cut(s) 176, 660, 1076
TaqI TCGA 2 cut(s) 311, 1261
TfiI GAWTC 2 cut(s) 862, 950
TscAI CASTG 4 cut(s) 46, 276, 580, 951
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 3 cut(s) 74, 77, 353
Tsp45I GTSAC 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 853
TspRI CASTG 4 cut(s) 46, 276, 580, 951
VpaK11BI GGWCC 1 cut(s) 1196
XagI CCTNNNNNAGG 1 cut(s) 492
XapI RAATTY 8 cut(s) 274, 440, 556, 627, 928, 955, 1044, 1318
XcmI CCANNNNNNNNNTGG 2 cut(s) 561, 662
XmaJI CCTAGG 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 5 cut(s) 65, 740, 759, 768, 1346
ZraI GACGTC 1 cut(s) 174
Zsp2I ATGCAT 2 cut(s) 157, 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.