gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 14 - 133 | 2.2e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 470 |
| AcsI | RAATTY | 1 cut(s) | 101 |
| AcuI | CTGAAG | 1 cut(s) | 602 |
| AgsI | TTSAA | 2 cut(s) | 371, 604 |
| AjnI | CCWGG | 2 cut(s) | 81, 231 |
| AluBI | AGCT | 6 cut(s) | 56, 122, 223, 304, 352, 461 |
| AluI | AGCT | 6 cut(s) | 56, 122, 223, 304, 352, 461 |
| AlwI | GGATC | 1 cut(s) | 470 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 274 |
| AoxI | GGCC | 2 cut(s) | 270, 509 |
| ApoI | RAATTY | 1 cut(s) | 101 |
| AspA2I | CCTAGG | 1 cut(s) | 479 |
| AspS9I | GGNCC | 2 cut(s) | 271, 537 |
| AsuHPI | GGTGA | 1 cut(s) | 512 |
| AvaII | GGWCC | 1 cut(s) | 537 |
| AvrII | CCTAGG | 1 cut(s) | 479 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 387, 420 |
| BbsI | GAAGAC | 1 cut(s) | 384 |
| BccI | CCATC | 2 cut(s) | 496, 607 |
| BceAI | ACGGC | 1 cut(s) | 414 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 338, 372 |
| BciT130I | CCWGG | 2 cut(s) | 83, 233 |
| BciVI | GTATCC | 1 cut(s) | 388 |
| BclI | TGATCA | 1 cut(s) | 12 |
| BfaI | CTAG | 2 cut(s) | 416, 480 |
| BfmI | CTRYAG | 1 cut(s) | 174 |
| BfuI | GTATCC | 1 cut(s) | 388 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 433 |
| BlnI | CCTAGG | 1 cut(s) | 479 |
| Bme1390I | CCNGG | 2 cut(s) | 83, 233 |
| Bme18I | GGWCC | 1 cut(s) | 537 |
| BmgT120I | GGNCC | 2 cut(s) | 271, 537 |
| BmiI | GGNNCC | 1 cut(s) | 341 |
| BmrFI | CCNGG | 2 cut(s) | 83, 233 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BpiI | GAAGAC | 1 cut(s) | 384 |
| BpmI | CTGGAG | 1 cut(s) | 519 |
| BsaJI | CCNNGG | 1 cut(s) | 479 |
| Bse1I | ACTGG | 2 cut(s) | 253, 540 |
| Bse3DI | GCAATG | 3 cut(s) | 5, 90, 281 |
| BseBI | CCWGG | 2 cut(s) | 83, 233 |
| BseDI | CCNNGG | 1 cut(s) | 479 |
| BseGI | GGATG | 2 cut(s) | 390, 618 |
| BseMI | GCAATG | 3 cut(s) | 5, 90, 281 |
| BseMII | CTCAG | 3 cut(s) | 87, 305, 443 |
| BseNI | ACTGG | 2 cut(s) | 253, 540 |
| BshFI | GGCC | 2 cut(s) | 272, 511 |
| BsnI | GGCC | 2 cut(s) | 272, 511 |
| Bsp143I | GATC | 2 cut(s) | 12, 475 |
| BspANI | GGCC | 2 cut(s) | 272, 511 |
| BspCNI | CTCAG | 3 cut(s) | 88, 304, 442 |
| BspHI | TCATGA | 1 cut(s) | 15 |
| BspLI | GGNNCC | 1 cut(s) | 341 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BsrDI | GCAATG | 3 cut(s) | 5, 90, 281 |
| BsrI | ACTGG | 2 cut(s) | 253, 540 |
| BssECI | CCNNGG | 1 cut(s) | 479 |
| BssMI | GATC | 2 cut(s) | 12, 475 |
| BssT1I | CCWWGG | 1 cut(s) | 479 |
| Bst2UI | CCWGG | 2 cut(s) | 83, 233 |
| Bst4CI | ACNGT | 1 cut(s) | 409 |
| Bst6I | CTCTTC | 4 cut(s) | 14, 383, 578, 633 |
| BstDEI | CTNAG | 4 cut(s) | 96, 291, 429, 633 |
| BstF5I | GGATG | 2 cut(s) | 390, 618 |
| BstKTI | GATC | 2 cut(s) | 15, 478 |
| BstMBI | GATC | 2 cut(s) | 12, 475 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 128, 433 |
| BstNI | CCWGG | 2 cut(s) | 83, 233 |
| BstNSI | RCATGY | 1 cut(s) | 241 |
| BstSCI | CCNGG | 2 cut(s) | 81, 231 |
| BstSFI | CTRYAG | 1 cut(s) | 174 |
| BstV2I | GAAGAC | 1 cut(s) | 384 |
| BsuI | GTATCC | 1 cut(s) | 388 |
| BsuRI | GGCC | 2 cut(s) | 272, 511 |
| BtsCI | GGATG | 2 cut(s) | 390, 618 |
| BtsIMutI | CAGTG | 2 cut(s) | 437, 472 |
| CaiI | CAGNNNCTG | 1 cut(s) | 274 |
| CciI | TCATGA | 1 cut(s) | 15 |
| Cfr13I | GGNCC | 2 cut(s) | 271, 537 |
| CviAII | CATG | 3 cut(s) | 16, 157, 238 |
| DdeI | CTNAG | 4 cut(s) | 96, 291, 429, 633 |
| DpnI | GATC | 2 cut(s) | 14, 477 |
| DpnII | GATC | 2 cut(s) | 12, 475 |
| Eam1104I | CTCTTC | 4 cut(s) | 14, 383, 578, 633 |
| EarI | CTCTTC | 4 cut(s) | 14, 383, 578, 633 |
| Eco130I | CCWWGG | 1 cut(s) | 479 |
| Eco32I | GATATC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 537 |
| Eco57I | CTGAAG | 1 cut(s) | 602 |
| EcoO109I | RGGNCCY | 1 cut(s) | 271 |
| EcoRII | CCWGG | 2 cut(s) | 81, 231 |
| EcoRV | GATATC | 1 cut(s) | 37 |
| EcoT14I | CCWWGG | 1 cut(s) | 479 |
| ErhI | CCWWGG | 1 cut(s) | 479 |
| FaeI | CATG | 3 cut(s) | 19, 160, 241 |
| FaiI | YATR | 7 cut(s) | 17, 53, 158, 176, 192, 239, 444 |
| FatI | CATG | 3 cut(s) | 15, 156, 237 |
| FbaI | TGATCA | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 397, 625 |
| FspBI | CTAG | 2 cut(s) | 416, 480 |
| GsuI | CTGGAG | 1 cut(s) | 519 |
| HaeIII | GGCC | 2 cut(s) | 272, 511 |
| Hin1II | CATG | 3 cut(s) | 19, 160, 241 |
| HinfI | GANTC | 3 cut(s) | 86, 143, 643 |
| HphI | GGTGA | 1 cut(s) | 512 |
| Hpy166II | GTNNAC | 3 cut(s) | 412, 421, 520 |
| Hpy188I | TCNGA | 1 cut(s) | 582 |
| Hpy188III | TCNNGA | 5 cut(s) | 16, 140, 371, 498, 604 |
| Hpy8I | GTNNAC | 3 cut(s) | 412, 421, 520 |
| HpyCH4III | ACNGT | 1 cut(s) | 409 |
| HpyCH4V | TGCA | 3 cut(s) | 71, 265, 359 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 128, 433 |
| HpyF3I | CTNAG | 4 cut(s) | 96, 291, 429, 633 |
| Hsp92II | CATG | 3 cut(s) | 19, 160, 241 |
| Ksp22I | TGATCA | 1 cut(s) | 12 |
| Kzo9I | GATC | 2 cut(s) | 12, 475 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 2 cut(s) | 416, 480 |
| MaeIII | GTNAC | 1 cut(s) | 403 |
| MalI | GATC | 2 cut(s) | 14, 477 |
| MboI | GATC | 2 cut(s) | 12, 475 |
| MboII | GAAGA | 6 cut(s) | 31, 386, 389, 400, 595, 650 |
| MluCI | AATT | 1 cut(s) | 101 |
| MlyI | GAGTC | 2 cut(s) | 80, 137 |
| MnlI | CCTC | 8 cut(s) | 15, 226, 298, 384, 438, 528, 565, 579 |
| MseI | TTAA | 2 cut(s) | 195, 297 |
| MspA1I | CMGCKG | 1 cut(s) | 304 |
| MspR9I | CCNGG | 2 cut(s) | 83, 233 |
| MvaI | CCWGG | 2 cut(s) | 83, 233 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 128, 433 |
| NdeII | GATC | 2 cut(s) | 12, 475 |
| NlaIII | CATG | 3 cut(s) | 19, 160, 241 |
| NlaIV | GGNNCC | 1 cut(s) | 341 |
| NspI | RCATGY | 1 cut(s) | 241 |
| PagI | TCATGA | 1 cut(s) | 15 |
| PfeI | GAWTC | 1 cut(s) | 643 |
| PfoI | TCCNGGA | 1 cut(s) | 81 |
| PleI | GAGTC | 2 cut(s) | 80, 137 |
| PpsI | GAGTC | 2 cut(s) | 80, 137 |
| Psp6I | CCWGG | 2 cut(s) | 81, 231 |
| PspGI | CCWGG | 2 cut(s) | 81, 231 |
| PspN4I | GGNNCC | 1 cut(s) | 341 |
| PspPI | GGNCC | 2 cut(s) | 271, 537 |
| PstNI | CAGNNNCTG | 1 cut(s) | 274 |
| PvuII | CAGCTG | 1 cut(s) | 304 |
| SaqAI | TTAA | 2 cut(s) | 195, 297 |
| Sau3AI | GATC | 2 cut(s) | 12, 475 |
| Sau96I | GGNCC | 2 cut(s) | 271, 537 |
| SchI | GAGTC | 2 cut(s) | 80, 137 |
| ScrFI | CCNGG | 2 cut(s) | 83, 233 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfcI | CTRYAG | 1 cut(s) | 174 |
| SinI | GGWCC | 1 cut(s) | 537 |
| Sse9I | AATT | 1 cut(s) | 101 |
| SspMI | CTAG | 2 cut(s) | 416, 480 |
| StyD4I | CCNGG | 2 cut(s) | 81, 231 |
| StyI | CCWWGG | 1 cut(s) | 479 |
| TaaI | ACNGT | 1 cut(s) | 409 |
| TasI | AATT | 1 cut(s) | 101 |
| TfiI | GAWTC | 1 cut(s) | 643 |
| Tru1I | TTAA | 2 cut(s) | 195, 297 |
| Tru9I | TTAA | 2 cut(s) | 195, 297 |
| TscAI | CASTG | 2 cut(s) | 437, 472 |
| TspDTI | ATGAA | 4 cut(s) | 32, 173, 247, 401 |
| TspRI | CASTG | 2 cut(s) | 437, 472 |
| VpaK11BI | GGWCC | 1 cut(s) | 537 |
| XapI | RAATTY | 1 cut(s) | 101 |
| XceI | RCATGY | 1 cut(s) | 241 |
| XmaJI | CCTAGG | 1 cut(s) | 479 |
| XspI | CTAG | 2 cut(s) | 416, 480 |