gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 59 - 207 | 2.4e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 482 |
| Acc16I | TGCGCA | 1 cut(s) | 546 |
| AccI | GTMKAC | 1 cut(s) | 386 |
| AclWI | GGATC | 1 cut(s) | 73 |
| AcsI | RAATTY | 3 cut(s) | 37, 323, 671 |
| AcuI | CTGAAG | 1 cut(s) | 36 |
| AfaI | GTAC | 1 cut(s) | 793 |
| AflII | CTTAAG | 1 cut(s) | 526 |
| AjnI | CCWGG | 1 cut(s) | 80 |
| Alw26I | GTCTC | 1 cut(s) | 195 |
| AlwI | GGATC | 1 cut(s) | 73 |
| AoxI | GGCC | 1 cut(s) | 78 |
| ApeKI | GCWGC | 5 cut(s) | 350, 409, 622, 716, 719 |
| ApoI | RAATTY | 3 cut(s) | 37, 323, 671 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 671 |
| AspLEI | GCGC | 1 cut(s) | 547 |
| AspS9I | GGNCC | 1 cut(s) | 561 |
| AsuHPI | GGTGA | 1 cut(s) | 19 |
| AvaII | GGWCC | 1 cut(s) | 561 |
| BbvI | GCAGC | 5 cut(s) | 362, 421, 634, 728, 731 |
| BccI | CCATC | 2 cut(s) | 517, 709 |
| BciT130I | CCWGG | 1 cut(s) | 82 |
| BcoDI | GTCTC | 1 cut(s) | 195 |
| BfaI | CTAG | 5 cut(s) | 171, 354, 441, 513, 534 |
| BfmI | CTRYAG | 2 cut(s) | 690, 714 |
| BfrI | CTTAAG | 1 cut(s) | 526 |
| BglII | AGATCT | 1 cut(s) | 457 |
| BisI | GCNGC | 5 cut(s) | 351, 410, 623, 717, 720 |
| BlsI | GCNGC | 5 cut(s) | 352, 411, 624, 718, 721 |
| Bme1390I | CCNGG | 1 cut(s) | 82 |
| Bme18I | GGWCC | 1 cut(s) | 561 |
| BmgT120I | GGNCC | 1 cut(s) | 561 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 82 |
| BmsI | GCATC | 3 cut(s) | 45, 102, 154 |
| Bpu10I | CCTNAGC | 1 cut(s) | 446 |
| BsaBI | GATNNNNATC | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 1 cut(s) | 363 |
| Bse1I | ACTGG | 3 cut(s) | 67, 209, 394 |
| Bse8I | GATNNNNATC | 1 cut(s) | 456 |
| BseBI | CCWGG | 1 cut(s) | 82 |
| BseDI | CCNNGG | 1 cut(s) | 363 |
| BseGI | GGATG | 4 cut(s) | 176, 478, 598, 841 |
| BseJI | GATNNNNATC | 1 cut(s) | 456 |
| BseMII | CTCAG | 3 cut(s) | 309, 420, 460 |
| BseNI | ACTGG | 3 cut(s) | 67, 209, 394 |
| BseRI | GAGGAG | 1 cut(s) | 611 |
| BseXI | GCAGC | 5 cut(s) | 362, 421, 634, 728, 731 |
| BshFI | GGCC | 1 cut(s) | 80 |
| BsmAI | GTCTC | 1 cut(s) | 195 |
| BsnI | GGCC | 1 cut(s) | 80 |
| Bsp1407I | TGTACA | 1 cut(s) | 791 |
| Bsp143I | GATC | 2 cut(s) | 65, 457 |
| BspANI | GGCC | 1 cut(s) | 80 |
| BspCNI | CTCAG | 3 cut(s) | 310, 421, 459 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspMAI | CTGCAG | 1 cut(s) | 718 |
| BspPI | GGATC | 1 cut(s) | 73 |
| BspQI | GCTCTTC | 1 cut(s) | 273 |
| BspTI | CTTAAG | 1 cut(s) | 526 |
| BsrGI | TGTACA | 1 cut(s) | 791 |
| BsrI | ACTGG | 3 cut(s) | 67, 209, 394 |
| BssECI | CCNNGG | 1 cut(s) | 363 |
| BssMI | GATC | 2 cut(s) | 65, 457 |
| BssNAI | GTATAC | 1 cut(s) | 387 |
| BssT1I | CCWWGG | 1 cut(s) | 363 |
| Bst1107I | GTATAC | 1 cut(s) | 387 |
| Bst2UI | CCWGG | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 2 cut(s) | 262, 791 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 273 |
| BstAFI | CTTAAG | 1 cut(s) | 526 |
| BstAUI | TGTACA | 1 cut(s) | 791 |
| BstDEI | CTNAG | 6 cut(s) | 228, 318, 429, 446, 496, 681 |
| BstF5I | GGATG | 4 cut(s) | 176, 478, 598, 841 |
| BstHHI | GCGC | 1 cut(s) | 547 |
| BstKTI | GATC | 2 cut(s) | 68, 460 |
| BstMAI | GTCTC | 1 cut(s) | 195 |
| BstMBI | GATC | 2 cut(s) | 65, 457 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 350, 430 |
| BstNI | CCWGG | 1 cut(s) | 82 |
| BstSCI | CCNGG | 1 cut(s) | 80 |
| BstSFI | CTRYAG | 2 cut(s) | 690, 714 |
| BstV1I | GCAGC | 5 cut(s) | 362, 421, 634, 728, 731 |
| BstX2I | RGATCY | 1 cut(s) | 457 |
| BstYI | RGATCY | 1 cut(s) | 457 |
| BstZ17I | GTATAC | 1 cut(s) | 387 |
| BsuRI | GGCC | 1 cut(s) | 80 |
| BtsCI | GGATG | 4 cut(s) | 176, 478, 598, 841 |
| BtsIMutI | CAGTG | 1 cut(s) | 426 |
| CfoI | GCGC | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 1 cut(s) | 561 |
| Csp6I | GTAC | 1 cut(s) | 792 |
| CviAII | CATG | 6 cut(s) | 34, 116, 124, 250, 778, 807 |
| CviQI | GTAC | 1 cut(s) | 792 |
| DdeI | CTNAG | 6 cut(s) | 228, 318, 429, 446, 496, 681 |
| DpnI | GATC | 2 cut(s) | 67, 459 |
| DpnII | GATC | 2 cut(s) | 65, 457 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 482 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 482 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 273 |
| EarI | CTCTTC | 2 cut(s) | 80, 273 |
| Eco130I | CCWWGG | 1 cut(s) | 363 |
| Eco147I | AGGCCT | 1 cut(s) | 80 |
| Eco47I | GGWCC | 1 cut(s) | 561 |
| Eco57I | CTGAAG | 1 cut(s) | 36 |
| EcoRII | CCWGG | 1 cut(s) | 80 |
| EcoT14I | CCWWGG | 1 cut(s) | 363 |
| EcoT22I | ATGCAT | 1 cut(s) | 117 |
| ErhI | CCWWGG | 1 cut(s) | 363 |
| FaeI | CATG | 6 cut(s) | 37, 119, 127, 253, 781, 810 |
| FatI | CATG | 6 cut(s) | 33, 115, 123, 249, 777, 806 |
| FblI | GTMKAC | 1 cut(s) | 386 |
| Fnu4HI | GCNGC | 5 cut(s) | 351, 410, 623, 717, 720 |
| FokI | GGATG | 4 cut(s) | 163, 485, 605, 848 |
| Fsp4HI | GCNGC | 5 cut(s) | 351, 410, 623, 717, 720 |
| FspBI | CTAG | 5 cut(s) | 171, 354, 441, 513, 534 |
| FspI | TGCGCA | 1 cut(s) | 546 |
| GlaI | GCGC | 1 cut(s) | 546 |
| GluI | GCNGC | 5 cut(s) | 351, 410, 623, 717, 720 |
| HaeIII | GGCC | 1 cut(s) | 80 |
| HhaI | GCGC | 1 cut(s) | 547 |
| Hin1II | CATG | 6 cut(s) | 37, 119, 127, 253, 781, 810 |
| Hin6I | GCGC | 1 cut(s) | 545 |
| HinP1I | GCGC | 1 cut(s) | 545 |
| HincII | GTYRAC | 2 cut(s) | 298, 730 |
| HindII | GTYRAC | 2 cut(s) | 298, 730 |
| HinfI | GANTC | 4 cut(s) | 24, 465, 500, 826 |
| HphI | GGTGA | 1 cut(s) | 19 |
| Hpy166II | GTNNAC | 4 cut(s) | 298, 387, 487, 730 |
| Hpy188I | TCNGA | 2 cut(s) | 181, 256 |
| Hpy188III | TCNNGA | 4 cut(s) | 52, 200, 418, 705 |
| Hpy8I | GTNNAC | 4 cut(s) | 298, 387, 487, 730 |
| HpyAV | CCTTC | 3 cut(s) | 14, 544, 778 |
| HpyCH4III | ACNGT | 2 cut(s) | 262, 791 |
| HpyCH4V | TGCA | 3 cut(s) | 115, 167, 716 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 350, 430 |
| HpyF3I | CTNAG | 6 cut(s) | 228, 318, 429, 446, 496, 681 |
| Hsp92II | CATG | 6 cut(s) | 37, 119, 127, 253, 781, 810 |
| HspAI | GCGC | 1 cut(s) | 545 |
| Kzo9I | GATC | 2 cut(s) | 65, 457 |
| LguI | GCTCTTC | 1 cut(s) | 273 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 5 cut(s) | 362, 421, 634, 728, 731 |
| LweI | GCATC | 3 cut(s) | 45, 102, 154 |
| MaeI | CTAG | 5 cut(s) | 171, 354, 441, 513, 534 |
| MalI | GATC | 2 cut(s) | 67, 459 |
| MboI | GATC | 2 cut(s) | 65, 457 |
| MboII | GAAGA | 5 cut(s) | 29, 97, 290, 622, 793 |
| MflI | RGATCY | 1 cut(s) | 457 |
| MluCI | AATT | 5 cut(s) | 37, 217, 323, 640, 671 |
| MlyI | GAGTC | 1 cut(s) | 474 |
| MnlI | CCTC | 6 cut(s) | 258, 340, 589, 637, 643, 832 |
| Mph1103I | ATGCAT | 1 cut(s) | 117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 671 |
| MseI | TTAA | 5 cut(s) | 75, 435, 527, 741, 801 |
| MslI | CAYNNNNRTG | 2 cut(s) | 32, 834 |
| MspCI | CTTAAG | 1 cut(s) | 526 |
| MspR9I | CCNGG | 1 cut(s) | 82 |
| MvaI | CCWGG | 1 cut(s) | 82 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 350, 430 |
| NdeII | GATC | 2 cut(s) | 65, 457 |
| NlaIII | CATG | 6 cut(s) | 37, 119, 127, 253, 781, 810 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NsbI | TGCGCA | 1 cut(s) | 546 |
| NsiI | ATGCAT | 1 cut(s) | 117 |
| PceI | AGGCCT | 1 cut(s) | 80 |
| PciSI | GCTCTTC | 1 cut(s) | 273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 671 |
| PfeI | GAWTC | 3 cut(s) | 24, 500, 826 |
| PkrI | GCNGC | 5 cut(s) | 352, 411, 624, 718, 721 |
| PleI | GAGTC | 1 cut(s) | 473 |
| PpsI | GAGTC | 1 cut(s) | 473 |
| Psp6I | CCWGG | 1 cut(s) | 80 |
| PspGI | CCWGG | 1 cut(s) | 80 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 561 |
| PstI | CTGCAG | 1 cut(s) | 718 |
| PsuI | RGATCY | 1 cut(s) | 457 |
| RsaI | GTAC | 1 cut(s) | 793 |
| RsaNI | GTAC | 1 cut(s) | 792 |
| RseI | CAYNNNNRTG | 2 cut(s) | 32, 834 |
| SapI | GCTCTTC | 1 cut(s) | 273 |
| SaqAI | TTAA | 5 cut(s) | 75, 435, 527, 741, 801 |
| SatI | GCNGC | 5 cut(s) | 351, 410, 623, 717, 720 |
| Sau3AI | GATC | 2 cut(s) | 65, 457 |
| Sau96I | GGNCC | 1 cut(s) | 561 |
| SchI | GAGTC | 1 cut(s) | 474 |
| ScrFI | CCNGG | 1 cut(s) | 82 |
| SfaNI | GCATC | 3 cut(s) | 45, 102, 154 |
| SfcI | CTRYAG | 2 cut(s) | 690, 714 |
| SinI | GGWCC | 1 cut(s) | 561 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 32, 834 |
| SmlI | CTYRAG | 1 cut(s) | 526 |
| SmoI | CTYRAG | 1 cut(s) | 526 |
| Sse9I | AATT | 5 cut(s) | 37, 217, 323, 640, 671 |
| SseBI | AGGCCT | 1 cut(s) | 80 |
| SspI | AATATT | 1 cut(s) | 194 |
| SspMI | CTAG | 5 cut(s) | 171, 354, 441, 513, 534 |
| StuI | AGGCCT | 1 cut(s) | 80 |
| StyD4I | CCNGG | 1 cut(s) | 80 |
| StyI | CCWWGG | 1 cut(s) | 363 |
| TaaI | ACNGT | 2 cut(s) | 262, 791 |
| TaqI | TCGA | 1 cut(s) | 199 |
| TasI | AATT | 5 cut(s) | 37, 217, 323, 640, 671 |
| TatI | WGTACW | 1 cut(s) | 791 |
| TfiI | GAWTC | 3 cut(s) | 24, 500, 826 |
| Tru1I | TTAA | 5 cut(s) | 75, 435, 527, 741, 801 |
| Tru9I | TTAA | 5 cut(s) | 75, 435, 527, 741, 801 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseI | GCWGC | 5 cut(s) | 350, 409, 622, 716, 719 |
| TspDTI | ATGAA | 5 cut(s) | 50, 386, 623, 794, 818 |
| TspRI | CASTG | 1 cut(s) | 433 |
| Vha464I | CTTAAG | 1 cut(s) | 526 |
| VpaK11BI | GGWCC | 1 cut(s) | 561 |
| XapI | RAATTY | 3 cut(s) | 37, 323, 671 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 59 |
| XmiI | GTMKAC | 1 cut(s) | 386 |
| XmnI | GAANNNNTTC | 1 cut(s) | 671 |
| XspI | CTAG | 5 cut(s) | 171, 354, 441, 513, 534 |
| Zsp2I | ATGCAT | 1 cut(s) | 117 |