gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 12 - 123 | 1.3e-13 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 211 |
| AccB1I | GGYRCC | 1 cut(s) | 211 |
| AccII | CGCG | 1 cut(s) | 18 |
| AciI | CCGC | 1 cut(s) | 18 |
| AclWI | GGATC | 1 cut(s) | 57 |
| AcsI | RAATTY | 2 cut(s) | 115, 250 |
| AfaI | GTAC | 2 cut(s) | 213, 475 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 434 |
| AgsI | TTSAA | 4 cut(s) | 68, 149, 199, 523 |
| AluBI | AGCT | 3 cut(s) | 305, 414, 581 |
| AluI | AGCT | 3 cut(s) | 305, 414, 581 |
| Alw26I | GTCTC | 3 cut(s) | 92, 218, 289 |
| AlwI | GGATC | 1 cut(s) | 57 |
| AoxI | GGCC | 1 cut(s) | 547 |
| ApoI | RAATTY | 2 cut(s) | 115, 250 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 153, 165, 475 |
| Asp718I | GGTACC | 1 cut(s) | 211 |
| AspLEI | GCGC | 1 cut(s) | 18 |
| AsuHPI | GGTGA | 2 cut(s) | 115, 356 |
| BanI | GGYRCC | 1 cut(s) | 211 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| BccI | CCATC | 1 cut(s) | 134 |
| BcoDI | GTCTC | 3 cut(s) | 92, 218, 289 |
| BmcAI | AGTACT | 1 cut(s) | 475 |
| BmiI | GGNNCC | 1 cut(s) | 213 |
| BmsI | GCATC | 2 cut(s) | 192, 451 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| BpuEI | CTTGAG | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 1 cut(s) | 45 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 434 |
| Bse3DI | GCAATG | 1 cut(s) | 183 |
| BseDI | CCNNGG | 1 cut(s) | 45 |
| BseGI | GGATG | 1 cut(s) | 35 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 434 |
| BseMI | GCAATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 3 cut(s) | 213, 287, 366 |
| BseRI | GAGGAG | 1 cut(s) | 472 |
| Bsh1236I | CGCG | 1 cut(s) | 18 |
| BshFI | GGCC | 1 cut(s) | 549 |
| BshNI | GGYRCC | 1 cut(s) | 211 |
| BslFI | GGGAC | 1 cut(s) | 326 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 434 |
| BsmAI | GTCTC | 3 cut(s) | 92, 218, 289 |
| BsmFI | GGGAC | 1 cut(s) | 326 |
| BsnI | GGCC | 1 cut(s) | 549 |
| Bsp143I | GATC | 1 cut(s) | 49 |
| BspACI | CCGC | 1 cut(s) | 18 |
| BspANI | GGCC | 1 cut(s) | 549 |
| BspCNI | CTCAG | 3 cut(s) | 214, 286, 367 |
| BspFNI | CGCG | 1 cut(s) | 18 |
| BspLI | GGNNCC | 1 cut(s) | 213 |
| BspPI | GGATC | 1 cut(s) | 57 |
| BspT107I | GGYRCC | 1 cut(s) | 211 |
| BsrDI | GCAATG | 1 cut(s) | 183 |
| BssECI | CCNNGG | 1 cut(s) | 45 |
| BssMI | GATC | 1 cut(s) | 49 |
| BssT1I | CCWWGG | 1 cut(s) | 45 |
| Bst4CI | ACNGT | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 3 cut(s) | 303, 547, 588 |
| BstDEI | CTNAG | 5 cut(s) | 222, 273, 306, 375, 486 |
| BstEII | GGTNACC | 2 cut(s) | 104, 437 |
| BstF5I | GGATG | 1 cut(s) | 35 |
| BstFNI | CGCG | 1 cut(s) | 18 |
| BstHHI | GCGC | 1 cut(s) | 18 |
| BstKTI | GATC | 1 cut(s) | 52 |
| BstMAI | GTCTC | 3 cut(s) | 92, 218, 289 |
| BstMBI | GATC | 1 cut(s) | 49 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 302, 587, 592 |
| BstPI | GGTNACC | 2 cut(s) | 104, 437 |
| BstUI | CGCG | 1 cut(s) | 18 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 49 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 340 |
| BstYI | RGATCY | 1 cut(s) | 49 |
| BsuRI | GGCC | 1 cut(s) | 549 |
| BtsCI | GGATG | 1 cut(s) | 35 |
| BtsI | GCAGTG | 1 cut(s) | 296 |
| BtsIMutI | CAGTG | 2 cut(s) | 296, 402 |
| Cac8I | GCNNGC | 3 cut(s) | 303, 547, 588 |
| CfoI | GCGC | 1 cut(s) | 18 |
| Csp6I | GTAC | 2 cut(s) | 212, 474 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 290, 325 |
| CviAII | CATG | 4 cut(s) | 239, 434, 443, 553 |
| CviJI | RGCY | 8 cut(s) | 44, 305, 374, 389, 414, 549, 581, 586 |
| CviKI_1 | RGCY | 8 cut(s) | 44, 305, 374, 389, 414, 549, 581, 586 |
| CviQI | GTAC | 2 cut(s) | 212, 474 |
| DdeI | CTNAG | 5 cut(s) | 222, 273, 306, 375, 486 |
| DpnI | GATC | 1 cut(s) | 51 |
| DpnII | GATC | 1 cut(s) | 49 |
| DraI | TTTAAA | 1 cut(s) | 499 |
| Eco130I | CCWWGG | 1 cut(s) | 45 |
| Eco91I | GGTNACC | 2 cut(s) | 104, 437 |
| EcoO65I | GGTNACC | 2 cut(s) | 104, 437 |
| EcoRI | GAATTC | 2 cut(s) | 115, 250 |
| EcoT14I | CCWWGG | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 45 |
| FaeI | CATG | 4 cut(s) | 242, 437, 446, 556 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 570, 602 |
| FaqI | GGGAC | 1 cut(s) | 326 |
| FatI | CATG | 4 cut(s) | 238, 433, 442, 552 |
| FauI | CCCGC | 1 cut(s) | 11 |
| FauNDI | CATATG | 1 cut(s) | 335 |
| FokI | GGATG | 1 cut(s) | 22 |
| GlaI | GCGC | 1 cut(s) | 17 |
| HaeIII | GGCC | 1 cut(s) | 549 |
| HhaI | GCGC | 1 cut(s) | 18 |
| Hin1II | CATG | 4 cut(s) | 242, 437, 446, 556 |
| Hin6I | GCGC | 1 cut(s) | 16 |
| HinP1I | GCGC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 1 cut(s) | 579 |
| HinfI | GANTC | 2 cut(s) | 83, 392 |
| HphI | GGTGA | 2 cut(s) | 115, 356 |
| Hpy166II | GTNNAC | 1 cut(s) | 181 |
| Hpy188I | TCNGA | 4 cut(s) | 88, 223, 356, 455 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| Hpy8I | GTNNAC | 1 cut(s) | 181 |
| HpyCH4III | ACNGT | 1 cut(s) | 451 |
| HpyCH4V | TGCA | 3 cut(s) | 296, 301, 537 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 302, 587, 592 |
| HpyF3I | CTNAG | 5 cut(s) | 222, 273, 306, 375, 486 |
| Hsp92II | CATG | 4 cut(s) | 242, 437, 446, 556 |
| HspAI | GCGC | 1 cut(s) | 16 |
| KpnI | GGTACC | 1 cut(s) | 215 |
| Kzo9I | GATC | 1 cut(s) | 49 |
| LpnPI | CCDG | 7 cut(s) | 42, 87, 122, 174, 273, 481, 531 |
| LweI | GCATC | 2 cut(s) | 192, 451 |
| MaeIII | GTNAC | 3 cut(s) | 104, 266, 437 |
| MalI | GATC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 49 |
| MboII | GAAGA | 4 cut(s) | 80, 103, 211, 568 |
| MflI | RGATCY | 1 cut(s) | 49 |
| MluCI | AATT | 8 cut(s) | 115, 194, 216, 250, 323, 357, 400, 562 |
| MlyI | GAGTC | 1 cut(s) | 92 |
| MnlI | CCTC | 4 cut(s) | 202, 340, 490, 493 |
| MroXI | GAANNNNTTC | 3 cut(s) | 153, 165, 475 |
| MseI | TTAA | 3 cut(s) | 278, 360, 498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 338 |
| MvnI | CGCG | 1 cut(s) | 18 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 302, 587, 592 |
| NdeI | CATATG | 1 cut(s) | 335 |
| NdeII | GATC | 1 cut(s) | 49 |
| NlaIII | CATG | 4 cut(s) | 242, 437, 446, 556 |
| NlaIV | GGNNCC | 1 cut(s) | 213 |
| PdmI | GAANNNNTTC | 3 cut(s) | 153, 165, 475 |
| PfeI | GAWTC | 1 cut(s) | 392 |
| PleI | GAGTC | 1 cut(s) | 91 |
| PpsI | GAGTC | 1 cut(s) | 91 |
| PspEI | GGTNACC | 2 cut(s) | 104, 437 |
| PspN4I | GGNNCC | 1 cut(s) | 213 |
| PsuI | RGATCY | 1 cut(s) | 49 |
| RsaI | GTAC | 2 cut(s) | 213, 475 |
| RsaNI | GTAC | 2 cut(s) | 212, 474 |
| RseI | CAYNNNNRTG | 1 cut(s) | 338 |
| SaqAI | TTAA | 3 cut(s) | 278, 360, 498 |
| Sau3AI | GATC | 1 cut(s) | 49 |
| ScaI | AGTACT | 1 cut(s) | 475 |
| SchI | GAGTC | 1 cut(s) | 92 |
| SetI | ASST | 8 cut(s) | 106, 111, 213, 262, 307, 416, 505, 583 |
| SfaNI | GCATC | 2 cut(s) | 192, 451 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 338 |
| SmlI | CTYRAG | 1 cut(s) | 206 |
| SmoI | CTYRAG | 1 cut(s) | 206 |
| Sse9I | AATT | 8 cut(s) | 115, 194, 216, 250, 323, 357, 400, 562 |
| SsiI | CCGC | 1 cut(s) | 18 |
| StyI | CCWWGG | 1 cut(s) | 45 |
| TaaI | ACNGT | 1 cut(s) | 451 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 8 cut(s) | 115, 194, 216, 250, 323, 357, 400, 562 |
| TatI | WGTACW | 1 cut(s) | 473 |
| TfiI | GAWTC | 1 cut(s) | 392 |
| Tru1I | TTAA | 3 cut(s) | 278, 360, 498 |
| Tru9I | TTAA | 3 cut(s) | 278, 360, 498 |
| TscAI | CASTG | 2 cut(s) | 303, 402 |
| TspDTI | ATGAA | 6 cut(s) | 71, 128, 227, 263, 336, 569 |
| TspRI | CASTG | 2 cut(s) | 303, 402 |
| XapI | RAATTY | 2 cut(s) | 115, 250 |
| XmnI | GAANNNNTTC | 3 cut(s) | 153, 165, 475 |
| ZrmI | AGTACT | 1 cut(s) | 475 |