gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 55 - 206 | 3.5e-15 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 755 |
| Acc36I | ACCTGC | 2 cut(s) | 755, 769 |
| AciI | CCGC | 1 cut(s) | 165 |
| AclWI | GGATC | 2 cut(s) | 140, 467 |
| AcoI | YGGCCR | 1 cut(s) | 799 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcuI | CTGAAG | 1 cut(s) | 794 |
| AfaI | GTAC | 2 cut(s) | 209, 712 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 589, 767 |
| AjnI | CCWGG | 1 cut(s) | 796 |
| AluBI | AGCT | 1 cut(s) | 358 |
| AluI | AGCT | 1 cut(s) | 358 |
| AlwI | GGATC | 2 cut(s) | 140, 467 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 350 |
| AoxI | GGCC | 2 cut(s) | 769, 799 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 272, 304 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 700, 779 |
| BalI | TGGCCA | 1 cut(s) | 801 |
| BccI | CCATC | 1 cut(s) | 217 |
| BciT130I | CCWGG | 1 cut(s) | 798 |
| BclI | TGATCA | 4 cut(s) | 127, 231, 237, 520 |
| BfaI | CTAG | 1 cut(s) | 119 |
| BfmI | CTRYAG | 1 cut(s) | 762 |
| BfuAI | ACCTGC | 2 cut(s) | 755, 769 |
| Bme1390I | CCNGG | 1 cut(s) | 798 |
| BmrFI | CCNGG | 1 cut(s) | 798 |
| BmsI | GCATC | 1 cut(s) | 26 |
| BsaBI | GATNNNNATC | 2 cut(s) | 236, 867 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 589, 767 |
| Bse1I | ACTGG | 2 cut(s) | 355, 712 |
| Bse3DI | GCAATG | 3 cut(s) | 158, 312, 432 |
| Bse8I | GATNNNNATC | 2 cut(s) | 236, 867 |
| BseBI | CCWGG | 1 cut(s) | 798 |
| BseGI | GGATG | 1 cut(s) | 607 |
| BseJI | GATNNNNATC | 2 cut(s) | 236, 867 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 589, 767 |
| BseMI | GCAATG | 3 cut(s) | 158, 312, 432 |
| BseMII | CTCAG | 3 cut(s) | 246, 297, 460 |
| BseNI | ACTGG | 2 cut(s) | 355, 712 |
| BseYI | CCCAGC | 1 cut(s) | 437 |
| BshFI | GGCC | 2 cut(s) | 771, 801 |
| BslFI | GGGAC | 1 cut(s) | 631 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 589, 767 |
| BsmFI | GGGAC | 1 cut(s) | 631 |
| BsnI | GGCC | 2 cut(s) | 771, 801 |
| Bsp143I | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| BspACI | CCGC | 1 cut(s) | 165 |
| BspANI | GGCC | 2 cut(s) | 771, 801 |
| BspCNI | CTCAG | 3 cut(s) | 247, 296, 459 |
| BspHI | TCATGA | 2 cut(s) | 234, 372 |
| BspMAI | CTGCAG | 1 cut(s) | 766 |
| BspMI | ACCTGC | 2 cut(s) | 755, 769 |
| BspPI | GGATC | 2 cut(s) | 140, 467 |
| BspQI | GCTCTTC | 1 cut(s) | 239 |
| BsrDI | GCAATG | 3 cut(s) | 158, 312, 432 |
| BsrI | ACTGG | 2 cut(s) | 355, 712 |
| BssMI | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| Bst2UI | CCWGG | 1 cut(s) | 798 |
| Bst6I | CTCTTC | 2 cut(s) | 239, 662 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 175 |
| BstDEI | CTNAG | 3 cut(s) | 255, 283, 446 |
| BstF5I | GGATG | 1 cut(s) | 607 |
| BstKTI | GATC | 6 cut(s) | 130, 148, 234, 240, 475, 523 |
| BstMBI | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 164, 183 |
| BstNI | CCWGG | 1 cut(s) | 798 |
| BstSCI | CCNGG | 1 cut(s) | 796 |
| BstSFI | CTRYAG | 1 cut(s) | 762 |
| BstX2I | RGATCY | 2 cut(s) | 145, 472 |
| BstYI | RGATCY | 2 cut(s) | 145, 472 |
| BsuRI | GGCC | 2 cut(s) | 771, 801 |
| BtsCI | GGATG | 1 cut(s) | 607 |
| BtsIMutI | CAGTG | 1 cut(s) | 639 |
| BveI | ACCTGC | 2 cut(s) | 755, 769 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 175 |
| CaiI | CAGNNNCTG | 1 cut(s) | 350 |
| CciI | TCATGA | 2 cut(s) | 234, 372 |
| Csp6I | GTAC | 2 cut(s) | 208, 711 |
| CviAII | CATG | 5 cut(s) | 131, 235, 373, 460, 643 |
| CviJI | RGCY | 6 cut(s) | 69, 358, 464, 771, 801, 838 |
| CviKI_1 | RGCY | 6 cut(s) | 69, 358, 464, 771, 801, 838 |
| CviQI | GTAC | 2 cut(s) | 208, 711 |
| DdeI | CTNAG | 3 cut(s) | 255, 283, 446 |
| DpnI | GATC | 6 cut(s) | 129, 147, 233, 239, 474, 522 |
| DpnII | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| DraI | TTTAAA | 1 cut(s) | 751 |
| EaeI | YGGCCR | 1 cut(s) | 799 |
| Eam1104I | CTCTTC | 2 cut(s) | 239, 662 |
| EarI | CTCTTC | 2 cut(s) | 239, 662 |
| Eco57I | CTGAAG | 1 cut(s) | 794 |
| EcoRII | CCWGG | 1 cut(s) | 796 |
| FaeI | CATG | 5 cut(s) | 134, 238, 376, 463, 646 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 767, 799 |
| FaqI | GGGAC | 1 cut(s) | 631 |
| FatI | CATG | 5 cut(s) | 130, 234, 372, 459, 642 |
| FauI | CCCGC | 1 cut(s) | 172 |
| FbaI | TGATCA | 4 cut(s) | 127, 231, 237, 520 |
| FokI | GGATG | 1 cut(s) | 614 |
| FspBI | CTAG | 1 cut(s) | 119 |
| GsaI | CCCAGC | 1 cut(s) | 441 |
| HaeIII | GGCC | 2 cut(s) | 771, 801 |
| Hin1II | CATG | 5 cut(s) | 134, 238, 376, 463, 646 |
| HindIII | AAGCTT | 1 cut(s) | 356 |
| HinfI | GANTC | 4 cut(s) | 106, 281, 500, 637 |
| Hpy188I | TCNGA | 5 cut(s) | 51, 286, 430, 449, 736 |
| Hpy188III | TCNNGA | 7 cut(s) | 79, 119, 235, 241, 278, 373, 661 |
| HpyAV | CCTTC | 2 cut(s) | 415, 610 |
| HpyCH4V | TGCA | 8 cut(s) | 17, 28, 173, 293, 317, 382, 764, 789 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 164, 183 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 283, 446 |
| Hsp92II | CATG | 5 cut(s) | 134, 238, 376, 463, 646 |
| Ksp22I | TGATCA | 4 cut(s) | 127, 231, 237, 520 |
| Kzo9I | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| LguI | GCTCTTC | 1 cut(s) | 239 |
| LweI | GCATC | 1 cut(s) | 26 |
| MaeI | CTAG | 1 cut(s) | 119 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 6 cut(s) | 129, 147, 233, 239, 474, 522 |
| MboI | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| MboII | GAAGA | 7 cut(s) | 155, 256, 295, 482, 676, 679, 775 |
| MflI | RGATCY | 2 cut(s) | 145, 472 |
| MlsI | TGGCCA | 1 cut(s) | 801 |
| MluCI | AATT | 4 cut(s) | 73, 101, 307, 606 |
| MluNI | TGGCCA | 1 cut(s) | 801 |
| MlyI | GAGTC | 1 cut(s) | 275 |
| MmeI | TCCRAC | 1 cut(s) | 360 |
| MnlI | CCTC | 8 cut(s) | 263, 369, 443, 592, 663, 723, 814, 842 |
| Mox20I | TGGCCA | 1 cut(s) | 801 |
| MroXI | GAANNNNTTC | 2 cut(s) | 700, 779 |
| MscI | TGGCCA | 1 cut(s) | 801 |
| MseI | TTAA | 4 cut(s) | 609, 744, 750, 807 |
| Msp20I | TGGCCA | 1 cut(s) | 801 |
| MspR9I | CCNGG | 1 cut(s) | 798 |
| MvaI | CCWGG | 1 cut(s) | 798 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 164, 183 |
| NdeII | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| NlaIII | CATG | 5 cut(s) | 134, 238, 376, 463, 646 |
| NmuCI | GTSAC | 1 cut(s) | 92 |
| PagI | TCATGA | 2 cut(s) | 234, 372 |
| PaqCI | CACCTGC | 1 cut(s) | 755 |
| PciSI | GCTCTTC | 1 cut(s) | 239 |
| PdmI | GAANNNNTTC | 2 cut(s) | 700, 779 |
| PfeI | GAWTC | 3 cut(s) | 106, 500, 637 |
| PleI | GAGTC | 1 cut(s) | 275 |
| PpsI | GAGTC | 1 cut(s) | 275 |
| Psp6I | CCWGG | 1 cut(s) | 796 |
| PspFI | CCCAGC | 1 cut(s) | 437 |
| PspGI | CCWGG | 1 cut(s) | 796 |
| PstI | CTGCAG | 1 cut(s) | 766 |
| PstNI | CAGNNNCTG | 1 cut(s) | 350 |
| PsuI | RGATCY | 2 cut(s) | 145, 472 |
| RsaI | GTAC | 2 cut(s) | 209, 712 |
| RsaNI | GTAC | 2 cut(s) | 208, 711 |
| SapI | GCTCTTC | 1 cut(s) | 239 |
| SaqAI | TTAA | 4 cut(s) | 609, 744, 750, 807 |
| Sau3AI | GATC | 6 cut(s) | 127, 145, 231, 237, 472, 520 |
| SbfI | CCTGCAGG | 1 cut(s) | 766 |
| SchI | GAGTC | 1 cut(s) | 275 |
| ScrFI | CCNGG | 1 cut(s) | 798 |
| SdaI | CCTGCAGG | 1 cut(s) | 766 |
| SetI | ASST | 9 cut(s) | 274, 333, 360, 380, 674, 734, 763, 769, 799 |
| SfaNI | GCATC | 1 cut(s) | 26 |
| SfcI | CTRYAG | 1 cut(s) | 762 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 766 |
| Sse9I | AATT | 4 cut(s) | 73, 101, 307, 606 |
| SsiI | CCGC | 1 cut(s) | 165 |
| SspMI | CTAG | 1 cut(s) | 119 |
| StyD4I | CCNGG | 1 cut(s) | 796 |
| TasI | AATT | 4 cut(s) | 73, 101, 307, 606 |
| TfiI | GAWTC | 3 cut(s) | 106, 500, 637 |
| Tru1I | TTAA | 4 cut(s) | 609, 744, 750, 807 |
| Tru9I | TTAA | 4 cut(s) | 609, 744, 750, 807 |
| TscAI | CASTG | 1 cut(s) | 639 |
| TseFI | GTSAC | 1 cut(s) | 92 |
| Tsp45I | GTSAC | 1 cut(s) | 92 |
| TspDTI | ATGAA | 4 cut(s) | 17, 377, 585, 618 |
| TspRI | CASTG | 1 cut(s) | 639 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XbaI | TCTAGA | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 2 cut(s) | 700, 779 |
| XspI | CTAG | 1 cut(s) | 119 |