FvH4_2g02290

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000077
Physical Location & Seq
Reverse (-)
1898307 .. 1901048
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02290.t1

Sequence Viewer

Length: 780 bp
ATGGGGATTCGTCTGCAAGAAATAGTTGTTCACGCCAAGCACATCATGCAGCTGCGCCGGAATGCCGCGACGTCGTCGAAGAACCAAATAAGGTGCAGCAGTACTACTAGTAGTAACGTTGATGATGTGCCAAAAGGTCACTTCGCAATTTATGTCGGGGTAGAAGAAGAGAGGAAGGAGCGGTTTGTGGTTCCTATTTCATACTTGAAGCAACCAATGTTCCAAGACTTGCTTGCTCAAGGCTGCCGAGGAGTTTGCTATGGGATTTACATTGATTGTTTGTTTGATTTTGAAAGCATATACCATTCTGGATCTCTGTTTTTGAATGTGACTCAAGTGGAGTTGTTGCATGGTAATAATTATAAGAATTGGAGGAAACATATAGATTACCATATAACTATGACCCTAGGCATGGACCTCTGCATTGTTGATGAGCAACCTGAAGAATTAGATGCTGATAGTAATCCTGAGGAAAGGAAAGCCTATAGGGATTGGCATAACAGTAACAGGAAAGCCAAAACCTTGATTAGGACTACCATGATTGACTCAATTAGGAGATCCATTGAGGAACCTGATACTGCTTGGGATTTTTTGGAGGCTATCTCTGAGAAATATCTAGAGAATGATAAGGCTGAAATATTGAGACTGAACAGGGAGTTTAATGACATGAGCTTTTCTGGGAATGGTTCAGTGAGGGAGCACATCATGACAATGATGGACCTTAATTCTAGGCTCAAGGATTTAGAAGTGGGTGTTAAGGATGAACAGGTTGTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

260

Amino Acids

30.03

Weight (kDa)

5.52

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 80 1e-12 Auxin responsive protein
Retrotran_gag_2 PF14223 141 - 258 9.2e-15 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AatII GACGTC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 181
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 66, 181
AclI AACGTT 1 cut(s) 117
AclWI GGATC 2 cut(s) 319, 552
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 412, 528
AgsI TTSAA 3 cut(s) 208, 293, 325
AhlI ACTAGT 1 cut(s) 107
AluBI AGCT 2 cut(s) 52, 672
AluI AGCT 2 cut(s) 52, 672
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 2 cut(s) 319, 552
ApeKI GCWGC 4 cut(s) 49, 52, 96, 243
AspA2I CCTAGG 1 cut(s) 406
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 415, 718
AvaII GGWCC 2 cut(s) 415, 718
AvrII CCTAGG 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 4 cut(s) 39, 61, 108, 230
BccI CCATC 1 cut(s) 709
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BcoDI GTCTC 1 cut(s) 637
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 4 cut(s) 108, 407, 617, 729
BfmI CTRYAG 1 cut(s) 484
BisI GCNGC 5 cut(s) 50, 53, 66, 97, 244
BlnI CCTAGG 1 cut(s) 406
BlsI GCNGC 5 cut(s) 51, 54, 67, 98, 245
BmcAI AGTACT 1 cut(s) 103
Bme18I GGWCC 2 cut(s) 415, 718
BmgT120I GGNCC 2 cut(s) 415, 718
BmiI GGNNCC 2 cut(s) 192, 570
BmsI GCATC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 587, 619
BpuEI CTTGAG 3 cut(s) 222, 318, 719
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 247, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 528
Bse21I CCTNAGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 247, 406
BseGI GGATG 1 cut(s) 766
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 412, 528
BseMII CTCAG 2 cut(s) 459, 597
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 4 cut(s) 39, 61, 108, 230
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 412, 528
BsmAI GTCTC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 2 cut(s) 311, 557
BspACI CCGC 2 cut(s) 66, 181
BspCNI CTCAG 2 cut(s) 460, 598
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 2 cut(s) 192, 570
BspPI GGATC 2 cut(s) 319, 552
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 247, 406
BssMI GATC 2 cut(s) 311, 557
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 406
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 468, 606
BstENI CCTNNNNNAGG 1 cut(s) 526
BstF5I GGATG 1 cut(s) 766
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 2 cut(s) 314, 560
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 2 cut(s) 311, 557
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 484
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 4 cut(s) 39, 61, 108, 230
BstX2I RGATCY 2 cut(s) 311, 557
BstYI RGATCY 2 cut(s) 311, 557
Bsu36I CCTNAGG 1 cut(s) 468
BtsCI GGATG 1 cut(s) 766
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 234
CciI TCATGA 1 cut(s) 705
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 415, 718
Csp6I GTAC 1 cut(s) 102
CviAII CATG 6 cut(s) 46, 350, 412, 538, 667, 706
CviJI RGCY 8 cut(s) 52, 243, 482, 515, 599, 632, 672, 733
CviKI_1 RGCY 8 cut(s) 52, 243, 482, 515, 599, 632, 672, 733
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 468, 606
DpnI GATC 2 cut(s) 313, 559
DpnII GATC 2 cut(s) 311, 557
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 415, 718
Eco57I CTGAAG 1 cut(s) 462
Eco81I CCTNAGG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 6 cut(s) 49, 353, 415, 541, 670, 709
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 6 cut(s) 45, 349, 411, 537, 666, 705
Fnu4HI GCNGC 5 cut(s) 50, 53, 66, 97, 244
FokI GGATG 1 cut(s) 773
Fsp4HI GCNGC 5 cut(s) 50, 53, 66, 97, 244
FspBI CTAG 4 cut(s) 108, 407, 617, 729
GlaI GCGC 1 cut(s) 56
GluI GCNGC 5 cut(s) 50, 53, 66, 97, 244
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 6 cut(s) 49, 353, 415, 541, 670, 709
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 3 cut(s) 7, 331, 545
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 607
Hpy188III TCNNGA 4 cut(s) 309, 467, 617, 706
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 3 cut(s) 73, 76, 79
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 2 cut(s) 71, 117
HpyCH4V TGCA 5 cut(s) 16, 49, 96, 349, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 2 cut(s) 468, 606
HpySE526I ACGT 2 cut(s) 71, 117
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 6 cut(s) 49, 353, 415, 541, 670, 709
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 311, 557
LmnI GCTCC 2 cut(s) 178, 697
LpnPI CCDG 9 cut(s) 71, 294, 453, 480, 493, 585, 637, 663, 752
Lsp1109I GCAGC 4 cut(s) 39, 61, 108, 230
LweI GCATC 1 cut(s) 442
MaeI CTAG 4 cut(s) 108, 407, 617, 729
MaeII ACGT 2 cut(s) 71, 117
MaeIII GTNAC 4 cut(s) 113, 137, 328, 503
MalI GATC 2 cut(s) 313, 559
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 311, 557
MboII GAAGA 4 cut(s) 91, 176, 179, 455
MflI RGATCY 2 cut(s) 311, 557
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 6 cut(s) 147, 358, 367, 446, 549, 724
MlyI GAGTC 2 cut(s) 325, 539
MnlI CCTC 8 cut(s) 165, 242, 366, 428, 463, 559, 589, 687
MseI TTAA 3 cut(s) 660, 723, 756
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 67
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 2 cut(s) 311, 557
NlaIII CATG 6 cut(s) 49, 353, 415, 541, 670, 709
NlaIV GGNNCC 2 cut(s) 192, 570
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 137, 328
PagI TCATGA 1 cut(s) 705
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 5 cut(s) 51, 54, 67, 98, 245
PleI GAGTC 2 cut(s) 325, 539
PpsI GAGTC 2 cut(s) 325, 539
PsiI TTATAA 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 192, 570
PspPI GGNCC 2 cut(s) 415, 718
PsuI RGATCY 2 cut(s) 311, 557
PsyI GACNNNGTC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 3 cut(s) 660, 723, 756
SatI GCNGC 5 cut(s) 50, 53, 66, 97, 244
Sau3AI GATC 2 cut(s) 311, 557
Sau96I GGNCC 2 cut(s) 415, 718
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 2 cut(s) 325, 539
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 1 cut(s) 484
SinI GGWCC 2 cut(s) 415, 718
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 3 cut(s) 237, 333, 734
SmoI CTYRAG 3 cut(s) 237, 333, 734
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 6 cut(s) 147, 358, 367, 446, 549, 724
SsiI CCGC 2 cut(s) 66, 181
SspI AATATT 1 cut(s) 639
SspMI CTAG 4 cut(s) 108, 407, 617, 729
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 2 cut(s) 74, 120
TaqI TCGA 1 cut(s) 77
TasI AATT 6 cut(s) 147, 358, 367, 446, 549, 724
TatI WGTACW 1 cut(s) 101
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 660, 723, 756
Tru9I TTAA 3 cut(s) 660, 723, 756
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 2 cut(s) 137, 328
TseI GCWGC 4 cut(s) 49, 52, 96, 243
Tsp45I GTSAC 2 cut(s) 137, 328
TspDTI ATGAA 2 cut(s) 189, 777
TspRI CASTG 1 cut(s) 696
Tth111I GACNNNGTC 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 415, 718
XagI CCTNNNNNAGG 1 cut(s) 526
XbaI TCTAGA 1 cut(s) 616
XmaJI CCTAGG 1 cut(s) 406
XspI CTAG 4 cut(s) 108, 407, 617, 729
ZraI GACGTC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.