gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 4 - 128 | 9.6e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 200 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 458 |
| AclWI | GGATC | 2 cut(s) | 3, 538 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AfaI | GTAC | 2 cut(s) | 27, 176 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 458, 470 |
| AgsI | TTSAA | 3 cut(s) | 345, 356, 706 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 686, 718 |
| AluBI | AGCT | 4 cut(s) | 196, 208, 337, 672 |
| AluI | AGCT | 4 cut(s) | 196, 208, 337, 672 |
| AlwI | GGATC | 2 cut(s) | 3, 538 |
| AoxI | GGCC | 3 cut(s) | 21, 249, 461 |
| ApeKI | GCWGC | 4 cut(s) | 424, 427, 448, 672 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 369, 555 |
| AspS9I | GGNCC | 2 cut(s) | 250, 461 |
| AsuHPI | GGTGA | 1 cut(s) | 253 |
| AsuII | TTCGAA | 1 cut(s) | 503 |
| BanI | GGYRCC | 1 cut(s) | 200 |
| BbsI | GAAGAC | 1 cut(s) | 362 |
| BbvI | GCAGC | 4 cut(s) | 436, 439, 460, 659 |
| BccI | CCATC | 3 cut(s) | 146, 238, 575 |
| BceAI | ACGGC | 1 cut(s) | 8 |
| BfaI | CTAG | 3 cut(s) | 197, 218, 510 |
| BisI | GCNGC | 4 cut(s) | 425, 428, 449, 673 |
| BlsI | GCNGC | 4 cut(s) | 426, 429, 450, 674 |
| BmgT120I | GGNCC | 2 cut(s) | 250, 461 |
| BmiI | GGNNCC | 1 cut(s) | 202 |
| BmsI | GCATC | 2 cut(s) | 61, 237 |
| BpiI | GAAGAC | 1 cut(s) | 362 |
| Bpu14I | TTCGAA | 1 cut(s) | 503 |
| BpuEI | CTTGAG | 1 cut(s) | 450 |
| BsaAI | YACGTR | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 458, 470 |
| Bse3DI | GCAATG | 2 cut(s) | 163, 696 |
| BseGI | GGATG | 2 cut(s) | 255, 672 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 458, 470 |
| BseMI | GCAATG | 2 cut(s) | 163, 696 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseRI | GAGGAG | 1 cut(s) | 374 |
| BseXI | GCAGC | 4 cut(s) | 436, 439, 460, 659 |
| BshFI | GGCC | 3 cut(s) | 23, 251, 463 |
| BshNI | GGYRCC | 1 cut(s) | 200 |
| BsiWI | CGTACG | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 458, 470 |
| BsnI | GGCC | 3 cut(s) | 23, 251, 463 |
| Bsp119I | TTCGAA | 1 cut(s) | 503 |
| Bsp143I | GATC | 2 cut(s) | 8, 530 |
| BspANI | GGCC | 3 cut(s) | 23, 251, 463 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspLI | GGNNCC | 1 cut(s) | 202 |
| BspPI | GGATC | 2 cut(s) | 3, 538 |
| BspT104I | TTCGAA | 1 cut(s) | 503 |
| BspT107I | GGYRCC | 1 cut(s) | 200 |
| BsrDI | GCAATG | 2 cut(s) | 163, 696 |
| BssMI | GATC | 2 cut(s) | 8, 530 |
| Bst4CI | ACNGT | 2 cut(s) | 147, 295 |
| BstBAI | YACGTR | 1 cut(s) | 29 |
| BstBI | TTCGAA | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 1 cut(s) | 625 |
| BstDEI | CTNAG | 3 cut(s) | 99, 129, 234 |
| BstF5I | GGATG | 2 cut(s) | 255, 672 |
| BstKTI | GATC | 2 cut(s) | 11, 533 |
| BstMBI | GATC | 2 cut(s) | 8, 530 |
| BstV1I | GCAGC | 4 cut(s) | 436, 439, 460, 659 |
| BstV2I | GAAGAC | 1 cut(s) | 362 |
| BstX2I | RGATCY | 2 cut(s) | 8, 530 |
| BstYI | RGATCY | 2 cut(s) | 8, 530 |
| BsuRI | GGCC | 3 cut(s) | 23, 251, 463 |
| BtsCI | GGATG | 2 cut(s) | 255, 672 |
| Cac8I | GCNNGC | 1 cut(s) | 625 |
| Cfr13I | GGNCC | 2 cut(s) | 250, 461 |
| Csp6I | GTAC | 2 cut(s) | 26, 175 |
| CviAII | CATG | 3 cut(s) | 13, 181, 589 |
| CviQI | GTAC | 2 cut(s) | 26, 175 |
| DdeI | CTNAG | 3 cut(s) | 99, 129, 234 |
| DpnI | GATC | 2 cut(s) | 10, 532 |
| DpnII | GATC | 2 cut(s) | 8, 530 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| FaeI | CATG | 3 cut(s) | 16, 184, 592 |
| FaiI | YATR | 9 cut(s) | 14, 54, 90, 150, 182, 404, 454, 590, 718 |
| FatI | CATG | 3 cut(s) | 12, 180, 588 |
| Fnu4HI | GCNGC | 4 cut(s) | 425, 428, 449, 673 |
| FokI | GGATG | 2 cut(s) | 242, 679 |
| Fsp4HI | GCNGC | 4 cut(s) | 425, 428, 449, 673 |
| FspBI | CTAG | 3 cut(s) | 197, 218, 510 |
| GluI | GCNGC | 4 cut(s) | 425, 428, 449, 673 |
| HaeIII | GGCC | 3 cut(s) | 23, 251, 463 |
| Hin1II | CATG | 3 cut(s) | 16, 184, 592 |
| HincII | GTYRAC | 1 cut(s) | 61 |
| HindII | GTYRAC | 1 cut(s) | 61 |
| HindIII | AAGCTT | 1 cut(s) | 206 |
| HinfI | GANTC | 2 cut(s) | 95, 712 |
| HphI | GGTGA | 1 cut(s) | 253 |
| Hpy166II | GTNNAC | 1 cut(s) | 61 |
| Hpy188I | TCNGA | 3 cut(s) | 100, 170, 550 |
| Hpy188III | TCNNGA | 5 cut(s) | 68, 218, 322, 356, 377 |
| Hpy8I | GTNNAC | 1 cut(s) | 61 |
| Hpy99I | CGWCG | 1 cut(s) | 378 |
| HpyAV | CCTTC | 5 cut(s) | 97, 104, 232, 376, 656 |
| HpyCH4III | ACNGT | 2 cut(s) | 147, 295 |
| HpyCH4IV | ACGT | 2 cut(s) | 28, 367 |
| HpyCH4V | TGCA | 4 cut(s) | 406, 478, 627, 675 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 129, 234 |
| HpySE526I | ACGT | 2 cut(s) | 28, 367 |
| Hsp92II | CATG | 3 cut(s) | 16, 184, 592 |
| Kzo9I | GATC | 2 cut(s) | 8, 530 |
| LpnPI | CCDG | 2 cut(s) | 307, 342 |
| Lsp1109I | GCAGC | 4 cut(s) | 436, 439, 460, 659 |
| LweI | GCATC | 2 cut(s) | 61, 237 |
| MaeI | CTAG | 3 cut(s) | 197, 218, 510 |
| MaeII | ACGT | 2 cut(s) | 28, 367 |
| MaeIII | GTNAC | 1 cut(s) | 637 |
| MalI | GATC | 2 cut(s) | 10, 532 |
| MboI | GATC | 2 cut(s) | 8, 530 |
| MboII | GAAGA | 4 cut(s) | 362, 492, 507, 525 |
| MflI | RGATCY | 2 cut(s) | 8, 530 |
| MluCI | AATT | 5 cut(s) | 136, 211, 346, 397, 520 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MmeI | TCCRAC | 1 cut(s) | 561 |
| MnlI | CCTC | 7 cut(s) | 13, 34, 286, 352, 355, 474, 644 |
| MroXI | GAANNNNTTC | 2 cut(s) | 369, 555 |
| MseI | TTAA | 3 cut(s) | 135, 210, 396 |
| NdeII | GATC | 2 cut(s) | 8, 530 |
| NlaIII | CATG | 3 cut(s) | 16, 184, 592 |
| NlaIV | GGNNCC | 1 cut(s) | 202 |
| NspV | TTCGAA | 1 cut(s) | 503 |
| PdmI | GAANNNNTTC | 2 cut(s) | 369, 555 |
| PfeI | GAWTC | 1 cut(s) | 712 |
| Pfl23II | CGTACG | 1 cut(s) | 25 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 458 |
| PkrI | GCNGC | 4 cut(s) | 426, 429, 450, 674 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| Ppu21I | YACGTR | 1 cut(s) | 29 |
| PspLI | CGTACG | 1 cut(s) | 25 |
| PspN4I | GGNNCC | 1 cut(s) | 202 |
| PspPI | GGNCC | 2 cut(s) | 250, 461 |
| PsuI | RGATCY | 2 cut(s) | 8, 530 |
| RsaI | GTAC | 2 cut(s) | 27, 176 |
| RsaNI | GTAC | 2 cut(s) | 26, 175 |
| SaqAI | TTAA | 3 cut(s) | 135, 210, 396 |
| SatI | GCNGC | 4 cut(s) | 425, 428, 449, 673 |
| Sau3AI | GATC | 2 cut(s) | 8, 530 |
| Sau96I | GGNCC | 2 cut(s) | 250, 461 |
| SchI | GAGTC | 1 cut(s) | 104 |
| SfaNI | GCATC | 2 cut(s) | 61, 237 |
| SfuI | TTCGAA | 1 cut(s) | 503 |
| SmlI | CTYRAG | 1 cut(s) | 465 |
| SmoI | CTYRAG | 1 cut(s) | 465 |
| Sse9I | AATT | 5 cut(s) | 136, 211, 346, 397, 520 |
| SspMI | CTAG | 3 cut(s) | 197, 218, 510 |
| TaaI | ACNGT | 2 cut(s) | 147, 295 |
| TaiI | ACGT | 2 cut(s) | 31, 370 |
| TaqI | TCGA | 1 cut(s) | 503 |
| TasI | AATT | 5 cut(s) | 136, 211, 346, 397, 520 |
| TatI | WGTACW | 1 cut(s) | 174 |
| TfiI | GAWTC | 1 cut(s) | 712 |
| Tru1I | TTAA | 3 cut(s) | 135, 210, 396 |
| Tru9I | TTAA | 3 cut(s) | 135, 210, 396 |
| TseI | GCWGC | 4 cut(s) | 424, 427, 448, 672 |
| TspDTI | ATGAA | 3 cut(s) | 17, 129, 605 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 458 |
| XbaI | TCTAGA | 1 cut(s) | 217 |
| XmnI | GAANNNNTTC | 2 cut(s) | 369, 555 |
| XspI | CTAG | 3 cut(s) | 197, 218, 510 |