gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 17 - 170 | 5.3e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 87 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 353 |
| Acc65I | GGTACC | 1 cut(s) | 595 |
| AccB1I | GGYRCC | 1 cut(s) | 595 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 307 |
| AclWI | GGATC | 1 cut(s) | 24 |
| AcoI | YGGCCR | 1 cut(s) | 114 |
| AcsI | RAATTY | 3 cut(s) | 212, 272, 529 |
| AcuI | CTGAAG | 3 cut(s) | 51, 87, 255 |
| AfaI | GTAC | 1 cut(s) | 597 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AgsI | TTSAA | 3 cut(s) | 262, 571, 691 |
| AjnI | CCWGG | 1 cut(s) | 384 |
| AleI | CACNNNNGTG | 1 cut(s) | 524 |
| AluBI | AGCT | 5 cut(s) | 49, 206, 239, 463, 732 |
| AluI | AGCT | 5 cut(s) | 49, 206, 239, 463, 732 |
| Alw21I | GWGCWC | 3 cut(s) | 465, 514, 734 |
| Alw26I | GTCTC | 1 cut(s) | 29 |
| Alw44I | GTGCAC | 1 cut(s) | 510 |
| AlwI | GGATC | 1 cut(s) | 24 |
| AoxI | GGCC | 2 cut(s) | 114, 198 |
| ApaLI | GTGCAC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 3 cut(s) | 239, 614, 617 |
| ApoI | RAATTY | 3 cut(s) | 212, 272, 529 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 566 |
| Asp718I | GGTACC | 1 cut(s) | 595 |
| AspS9I | GGNCC | 2 cut(s) | 132, 420 |
| AvaII | GGWCC | 2 cut(s) | 132, 420 |
| BaeGI | GKGCMC | 2 cut(s) | 514, 666 |
| BalI | TGGCCA | 1 cut(s) | 116 |
| BanI | GGYRCC | 1 cut(s) | 595 |
| BanII | GRGCYC | 2 cut(s) | 465, 734 |
| BbsI | GAAGAC | 1 cut(s) | 614 |
| Bbv12I | GWGCWC | 3 cut(s) | 465, 514, 734 |
| BbvI | GCAGC | 3 cut(s) | 226, 601, 604 |
| BccI | CCATC | 1 cut(s) | 529 |
| BciT130I | CCWGG | 1 cut(s) | 386 |
| BclI | TGATCA | 1 cut(s) | 702 |
| BcoDI | GTCTC | 1 cut(s) | 29 |
| BisI | GCNGC | 3 cut(s) | 240, 615, 618 |
| BlsI | GCNGC | 3 cut(s) | 241, 616, 619 |
| Bme1390I | CCNGG | 1 cut(s) | 386 |
| Bme18I | GGWCC | 2 cut(s) | 132, 420 |
| BmgT120I | GGNCC | 2 cut(s) | 132, 420 |
| BmiI | GGNNCC | 2 cut(s) | 171, 597 |
| BmrFI | CCNGG | 1 cut(s) | 386 |
| BmrI | ACTGGG | 1 cut(s) | 669 |
| BmsI | GCATC | 2 cut(s) | 352, 442 |
| BmuI | ACTGGG | 1 cut(s) | 669 |
| BpiI | GAAGAC | 1 cut(s) | 614 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 716 |
| BpmI | CTGGAG | 1 cut(s) | 215 |
| Bpu10I | CCTNAGC | 1 cut(s) | 591 |
| BpuEI | CTTGAG | 1 cut(s) | 422 |
| BsaBI | GATNNNNATC | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 2 cut(s) | 384, 735 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| Bse1I | ACTGG | 1 cut(s) | 664 |
| Bse3DI | GCAATG | 1 cut(s) | 585 |
| Bse8I | GATNNNNATC | 1 cut(s) | 320 |
| BseBI | CCWGG | 1 cut(s) | 386 |
| BseDI | CCNNGG | 2 cut(s) | 384, 735 |
| BseGI | GGATG | 4 cut(s) | 58, 457, 501, 705 |
| BseJI | GATNNNNATC | 1 cut(s) | 320 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseMI | GCAATG | 1 cut(s) | 585 |
| BseMII | CTCAG | 3 cut(s) | 349, 407, 594 |
| BseNI | ACTGG | 1 cut(s) | 664 |
| BseRI | GAGGAG | 2 cut(s) | 182, 740 |
| BseSI | GKGCMC | 2 cut(s) | 514, 666 |
| BseXI | GCAGC | 3 cut(s) | 226, 601, 604 |
| BshFI | GGCC | 2 cut(s) | 116, 200 |
| BshNI | GGYRCC | 1 cut(s) | 595 |
| BsiHKAI | GWGCWC | 3 cut(s) | 465, 514, 734 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsmAI | GTCTC | 1 cut(s) | 29 |
| BsnI | GGCC | 2 cut(s) | 116, 200 |
| Bsp1286I | GDGCHC | 4 cut(s) | 465, 514, 666, 734 |
| Bsp143I | GATC | 3 cut(s) | 16, 265, 702 |
| BspANI | GGCC | 2 cut(s) | 116, 200 |
| BspCNI | CTCAG | 3 cut(s) | 348, 408, 595 |
| BspLI | GGNNCC | 2 cut(s) | 171, 597 |
| BspPI | GGATC | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 1 cut(s) | 595 |
| BsrDI | GCAATG | 1 cut(s) | 585 |
| BsrI | ACTGG | 1 cut(s) | 664 |
| BssECI | CCNNGG | 2 cut(s) | 384, 735 |
| BssMI | GATC | 3 cut(s) | 16, 265, 702 |
| BssT1I | CCWWGG | 1 cut(s) | 735 |
| Bst2UI | CCWGG | 1 cut(s) | 386 |
| Bst4CI | ACNGT | 2 cut(s) | 151, 249 |
| Bst6I | CTCTTC | 1 cut(s) | 63 |
| BstDEI | CTNAG | 4 cut(s) | 335, 416, 591, 603 |
| BstF5I | GGATG | 4 cut(s) | 58, 457, 501, 705 |
| BstKTI | GATC | 3 cut(s) | 19, 268, 705 |
| BstMAI | GTCTC | 1 cut(s) | 29 |
| BstMBI | GATC | 3 cut(s) | 16, 265, 702 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 46, 239, 648 |
| BstNI | CCWGG | 1 cut(s) | 386 |
| BstNSI | RCATGY | 1 cut(s) | 182 |
| BstSCI | CCNGG | 1 cut(s) | 384 |
| BstSLI | GKGCMC | 2 cut(s) | 514, 666 |
| BstV1I | GCAGC | 3 cut(s) | 226, 601, 604 |
| BstV2I | GAAGAC | 1 cut(s) | 614 |
| BstX2I | RGATCY | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 16 |
| BsuRI | GGCC | 2 cut(s) | 116, 200 |
| BtsCI | GGATG | 4 cut(s) | 58, 457, 501, 705 |
| BtsI | GCAGTG | 3 cut(s) | 189, 519, 683 |
| BtsIMutI | CAGTG | 7 cut(s) | 27, 63, 189, 283, 519, 600, 683 |
| Cfr13I | GGNCC | 2 cut(s) | 132, 420 |
| Csp6I | GTAC | 1 cut(s) | 596 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 259, 294 |
| CviAII | CATG | 6 cut(s) | 13, 179, 349, 377, 667, 744 |
| CviQI | GTAC | 1 cut(s) | 596 |
| DdeI | CTNAG | 4 cut(s) | 335, 416, 591, 603 |
| DpnI | GATC | 3 cut(s) | 18, 267, 704 |
| DpnII | GATC | 3 cut(s) | 16, 265, 702 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 353 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 353 |
| EaeI | YGGCCR | 1 cut(s) | 114 |
| Eam1104I | CTCTTC | 1 cut(s) | 63 |
| EarI | CTCTTC | 1 cut(s) | 63 |
| Ecl136II | GAGCTC | 2 cut(s) | 463, 732 |
| Eco130I | CCWWGG | 1 cut(s) | 735 |
| Eco24I | GRGCYC | 2 cut(s) | 465, 734 |
| Eco47I | GGWCC | 2 cut(s) | 132, 420 |
| Eco53kI | GAGCTC | 2 cut(s) | 463, 732 |
| Eco57I | CTGAAG | 3 cut(s) | 51, 87, 255 |
| EcoICRI | GAGCTC | 2 cut(s) | 463, 732 |
| EcoRII | CCWGG | 1 cut(s) | 384 |
| EcoT14I | CCWWGG | 1 cut(s) | 735 |
| EcoT38I | GRGCYC | 2 cut(s) | 465, 734 |
| ErhI | CCWWGG | 1 cut(s) | 735 |
| FaeI | CATG | 6 cut(s) | 16, 182, 352, 380, 670, 747 |
| FatI | CATG | 6 cut(s) | 12, 178, 348, 376, 666, 743 |
| FbaI | TGATCA | 1 cut(s) | 702 |
| Fnu4HI | GCNGC | 3 cut(s) | 240, 615, 618 |
| FokI | GGATG | 4 cut(s) | 65, 464, 508, 712 |
| FriOI | GRGCYC | 2 cut(s) | 465, 734 |
| Fsp4HI | GCNGC | 3 cut(s) | 240, 615, 618 |
| GluI | GCNGC | 3 cut(s) | 240, 615, 618 |
| GsuI | CTGGAG | 1 cut(s) | 215 |
| HaeIII | GGCC | 2 cut(s) | 116, 200 |
| Hin1II | CATG | 6 cut(s) | 16, 182, 352, 380, 670, 747 |
| HinfI | GANTC | 3 cut(s) | 4, 389, 556 |
| Hpy166II | GTNNAC | 1 cut(s) | 512 |
| Hpy188I | TCNGA | 6 cut(s) | 9, 145, 296, 338, 417, 561 |
| Hpy188III | TCNNGA | 3 cut(s) | 130, 194, 344 |
| Hpy8I | GTNNAC | 1 cut(s) | 512 |
| HpyAV | CCTTC | 2 cut(s) | 496, 677 |
| HpyCH4III | ACNGT | 2 cut(s) | 151, 249 |
| HpyCH4V | TGCA | 5 cut(s) | 182, 242, 512, 620, 651 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 46, 239, 648 |
| HpyF3I | CTNAG | 4 cut(s) | 335, 416, 591, 603 |
| Hsp92II | CATG | 6 cut(s) | 16, 182, 352, 380, 670, 747 |
| KpnI | GGTACC | 1 cut(s) | 599 |
| Ksp22I | TGATCA | 1 cut(s) | 702 |
| Kzo9I | GATC | 3 cut(s) | 16, 265, 702 |
| LmnI | GCTCC | 2 cut(s) | 169, 737 |
| Lsp1109I | GCAGC | 3 cut(s) | 226, 601, 604 |
| LweI | GCATC | 2 cut(s) | 352, 442 |
| MalI | GATC | 3 cut(s) | 18, 267, 704 |
| MboI | GATC | 3 cut(s) | 16, 265, 702 |
| MboII | GAAGA | 5 cut(s) | 44, 68, 80, 619, 682 |
| MflI | RGATCY | 1 cut(s) | 16 |
| MhlI | GDGCHC | 4 cut(s) | 465, 514, 666, 734 |
| MlsI | TGGCCA | 1 cut(s) | 116 |
| MluCI | AATT | 3 cut(s) | 212, 272, 529 |
| MluNI | TGGCCA | 1 cut(s) | 116 |
| MnlI | CCTC | 7 cut(s) | 64, 149, 160, 190, 411, 492, 718 |
| Mox20I | TGGCCA | 1 cut(s) | 116 |
| MroXI | GAANNNNTTC | 1 cut(s) | 566 |
| MscI | TGGCCA | 1 cut(s) | 116 |
| MseI | TTAA | 2 cut(s) | 636, 717 |
| MslI | CAYNNNNRTG | 1 cut(s) | 524 |
| Msp20I | TGGCCA | 1 cut(s) | 116 |
| MspR9I | CCNGG | 1 cut(s) | 386 |
| MvaI | CCWGG | 1 cut(s) | 386 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 46, 239, 648 |
| NdeII | GATC | 3 cut(s) | 16, 265, 702 |
| NlaIII | CATG | 6 cut(s) | 16, 182, 352, 380, 670, 747 |
| NlaIV | GGNNCC | 2 cut(s) | 171, 597 |
| NspI | RCATGY | 1 cut(s) | 182 |
| OliI | CACNNNNGTG | 1 cut(s) | 524 |
| PdmI | GAANNNNTTC | 1 cut(s) | 566 |
| PfeI | GAWTC | 3 cut(s) | 4, 389, 556 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 307 |
| PkrI | GCNGC | 3 cut(s) | 241, 616, 619 |
| PsiI | TTATAA | 1 cut(s) | 87 |
| Psp124BI | GAGCTC | 2 cut(s) | 465, 734 |
| Psp6I | CCWGG | 1 cut(s) | 384 |
| PspGI | CCWGG | 1 cut(s) | 384 |
| PspN4I | GGNNCC | 2 cut(s) | 171, 597 |
| PspPI | GGNCC | 2 cut(s) | 132, 420 |
| PsuI | RGATCY | 1 cut(s) | 16 |
| RsaI | GTAC | 1 cut(s) | 597 |
| RsaNI | GTAC | 1 cut(s) | 596 |
| RseI | CAYNNNNRTG | 1 cut(s) | 524 |
| SacI | GAGCTC | 2 cut(s) | 465, 734 |
| SaqAI | TTAA | 2 cut(s) | 636, 717 |
| SatI | GCNGC | 3 cut(s) | 240, 615, 618 |
| Sau3AI | GATC | 3 cut(s) | 16, 265, 702 |
| Sau96I | GGNCC | 2 cut(s) | 132, 420 |
| ScrFI | CCNGG | 1 cut(s) | 386 |
| SduI | GDGCHC | 4 cut(s) | 465, 514, 666, 734 |
| SetI | ASST | 9 cut(s) | 51, 208, 241, 260, 428, 465, 547, 597, 734 |
| SfaNI | GCATC | 2 cut(s) | 352, 442 |
| SinI | GGWCC | 2 cut(s) | 132, 420 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 524 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| Sse9I | AATT | 3 cut(s) | 212, 272, 529 |
| SstI | GAGCTC | 2 cut(s) | 465, 734 |
| StyD4I | CCNGG | 1 cut(s) | 384 |
| StyI | CCWWGG | 1 cut(s) | 735 |
| TaaI | ACNGT | 2 cut(s) | 151, 249 |
| TasI | AATT | 3 cut(s) | 212, 272, 529 |
| TfiI | GAWTC | 3 cut(s) | 4, 389, 556 |
| Tru1I | TTAA | 2 cut(s) | 636, 717 |
| Tru9I | TTAA | 2 cut(s) | 636, 717 |
| TscAI | CASTG | 7 cut(s) | 34, 70, 189, 283, 526, 607, 683 |
| TseI | GCWGC | 3 cut(s) | 239, 614, 617 |
| TspDTI | ATGAA | 5 cut(s) | 17, 69, 365, 498, 683 |
| TspRI | CASTG | 7 cut(s) | 34, 70, 189, 283, 526, 607, 683 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 307 |
| VneI | GTGCAC | 1 cut(s) | 510 |
| VpaK11BI | GGWCC | 2 cut(s) | 132, 420 |
| XapI | RAATTY | 3 cut(s) | 212, 272, 529 |
| XceI | RCATGY | 1 cut(s) | 182 |
| XmnI | GAANNNNTTC | 1 cut(s) | 566 |