gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 60 - 209 | 3.3e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 473, 620 |
| AcsI | RAATTY | 3 cut(s) | 111, 370, 389 |
| AfaI | GTAC | 2 cut(s) | 181, 492 |
| AgsI | TTSAA | 4 cut(s) | 65, 370, 388, 427 |
| AluBI | AGCT | 6 cut(s) | 143, 188, 254, 299, 476, 532 |
| AluI | AGCT | 6 cut(s) | 143, 188, 254, 299, 476, 532 |
| Alw21I | GWGCWC | 1 cut(s) | 420 |
| Alw26I | GTCTC | 1 cut(s) | 513 |
| AlwI | GGATC | 2 cut(s) | 473, 620 |
| ApoI | RAATTY | 3 cut(s) | 111, 370, 389 |
| AsuHPI | GGTGA | 1 cut(s) | 49 |
| Bbv12I | GWGCWC | 1 cut(s) | 420 |
| BccI | CCATC | 2 cut(s) | 41, 389 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 577, 611 |
| BcoDI | GTCTC | 1 cut(s) | 513 |
| BfaI | CTAG | 5 cut(s) | 107, 119, 183, 488, 654 |
| BfmI | CTRYAG | 3 cut(s) | 300, 318, 471 |
| BmcAI | AGTACT | 1 cut(s) | 181 |
| BpuEI | CTTGAG | 1 cut(s) | 332 |
| Bse1I | ACTGG | 3 cut(s) | 79, 161, 177 |
| BseMII | CTCAG | 3 cut(s) | 160, 533, 566 |
| BseNI | ACTGG | 3 cut(s) | 79, 161, 177 |
| BseRI | GAGGAG | 2 cut(s) | 338, 507 |
| BsiHKAI | GWGCWC | 1 cut(s) | 420 |
| BslFI | GGGAC | 2 cut(s) | 227, 451 |
| BsmAI | GTCTC | 1 cut(s) | 513 |
| BsmFI | GGGAC | 2 cut(s) | 227, 451 |
| Bsp1286I | GDGCHC | 1 cut(s) | 420 |
| Bsp143I | GATC | 3 cut(s) | 478, 498, 612 |
| BspCNI | CTCAG | 3 cut(s) | 159, 532, 565 |
| BspPI | GGATC | 2 cut(s) | 473, 620 |
| BsrI | ACTGG | 3 cut(s) | 79, 161, 177 |
| BssMI | GATC | 3 cut(s) | 478, 498, 612 |
| Bst4CI | ACNGT | 2 cut(s) | 288, 647 |
| Bst6I | CTCTTC | 1 cut(s) | 597 |
| BstDEI | CTNAG | 5 cut(s) | 11, 139, 146, 519, 552 |
| BstKTI | GATC | 3 cut(s) | 481, 501, 615 |
| BstMAI | GTCTC | 1 cut(s) | 513 |
| BstMBI | GATC | 3 cut(s) | 478, 498, 612 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 356 |
| BstSFI | CTRYAG | 3 cut(s) | 300, 318, 471 |
| BtsI | GCAGTG | 1 cut(s) | 418 |
| BtsIMutI | CAGTG | 2 cut(s) | 284, 418 |
| Csp6I | GTAC | 2 cut(s) | 180, 491 |
| CviAII | CATG | 1 cut(s) | 496 |
| CviQI | GTAC | 2 cut(s) | 180, 491 |
| DdeI | CTNAG | 5 cut(s) | 11, 139, 146, 519, 552 |
| DpnI | GATC | 3 cut(s) | 480, 500, 614 |
| DpnII | GATC | 3 cut(s) | 478, 498, 612 |
| Eam1104I | CTCTTC | 1 cut(s) | 597 |
| EarI | CTCTTC | 1 cut(s) | 597 |
| EcoRI | GAATTC | 1 cut(s) | 370 |
| FaeI | CATG | 1 cut(s) | 499 |
| FaqI | GGGAC | 2 cut(s) | 227, 451 |
| FatI | CATG | 1 cut(s) | 495 |
| FspBI | CTAG | 5 cut(s) | 107, 119, 183, 488, 654 |
| Hin1II | CATG | 1 cut(s) | 499 |
| HinfI | GANTC | 2 cut(s) | 280, 464 |
| HphI | GGTGA | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 2 cut(s) | 493, 650 |
| Hpy188I | TCNGA | 2 cut(s) | 149, 555 |
| Hpy188III | TCNNGA | 3 cut(s) | 311, 502, 616 |
| Hpy8I | GTNNAC | 2 cut(s) | 493, 650 |
| HpyCH4III | ACNGT | 2 cut(s) | 288, 647 |
| HpyCH4V | TGCA | 2 cut(s) | 247, 598 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 356 |
| HpyF3I | CTNAG | 5 cut(s) | 11, 139, 146, 519, 552 |
| Hsp92II | CATG | 1 cut(s) | 499 |
| Kzo9I | GATC | 3 cut(s) | 478, 498, 612 |
| LmnI | GCTCC | 1 cut(s) | 415 |
| LpnPI | CCDG | 5 cut(s) | 54, 60, 169, 174, 190 |
| MaeI | CTAG | 5 cut(s) | 107, 119, 183, 488, 654 |
| MaeIII | GTNAC | 1 cut(s) | 169 |
| MalI | GATC | 3 cut(s) | 480, 500, 614 |
| MboI | GATC | 3 cut(s) | 478, 498, 612 |
| MboII | GAAGA | 3 cut(s) | 109, 439, 614 |
| MhlI | GDGCHC | 1 cut(s) | 420 |
| MluCI | AATT | 5 cut(s) | 82, 111, 240, 370, 389 |
| MlyI | GAGTC | 1 cut(s) | 473 |
| MnlI | CCTC | 7 cut(s) | 65, 269, 307, 316, 525, 528, 549 |
| MseI | TTAA | 2 cut(s) | 87, 658 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 356 |
| NdeII | GATC | 3 cut(s) | 478, 498, 612 |
| NlaIII | CATG | 1 cut(s) | 499 |
| NmuCI | GTSAC | 1 cut(s) | 169 |
| PfeI | GAWTC | 1 cut(s) | 280 |
| PleI | GAGTC | 1 cut(s) | 472 |
| PpsI | GAGTC | 1 cut(s) | 472 |
| RsaI | GTAC | 2 cut(s) | 181, 492 |
| RsaNI | GTAC | 2 cut(s) | 180, 491 |
| SaqAI | TTAA | 2 cut(s) | 87, 658 |
| Sau3AI | GATC | 3 cut(s) | 478, 498, 612 |
| ScaI | AGTACT | 1 cut(s) | 181 |
| SchI | GAGTC | 1 cut(s) | 473 |
| SduI | GDGCHC | 1 cut(s) | 420 |
| SfcI | CTRYAG | 3 cut(s) | 300, 318, 471 |
| SmlI | CTYRAG | 1 cut(s) | 311 |
| SmoI | CTYRAG | 1 cut(s) | 311 |
| Sse9I | AATT | 5 cut(s) | 82, 111, 240, 370, 389 |
| SspMI | CTAG | 5 cut(s) | 107, 119, 183, 488, 654 |
| TaaI | ACNGT | 2 cut(s) | 288, 647 |
| TaqI | TCGA | 1 cut(s) | 587 |
| TasI | AATT | 5 cut(s) | 82, 111, 240, 370, 389 |
| TatI | WGTACW | 2 cut(s) | 179, 490 |
| TfiI | GAWTC | 1 cut(s) | 280 |
| Tru1I | TTAA | 2 cut(s) | 87, 658 |
| Tru9I | TTAA | 2 cut(s) | 87, 658 |
| TscAI | CASTG | 2 cut(s) | 291, 425 |
| TseFI | GTSAC | 1 cut(s) | 169 |
| Tsp45I | GTSAC | 1 cut(s) | 169 |
| TspDTI | ATGAA | 1 cut(s) | 65 |
| TspRI | CASTG | 2 cut(s) | 291, 425 |
| XapI | RAATTY | 3 cut(s) | 111, 370, 389 |
| XspI | CTAG | 5 cut(s) | 107, 119, 183, 488, 654 |
| ZrmI | AGTACT | 1 cut(s) | 181 |