Rroxscaffold_4G00328620

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000077
Physical Location & Seq
Reverse (-)
61703308 .. 61708387
5080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328620.1

Sequence Viewer

Length: 1083 bp
ATGATTATGTTGCAACTCTTGTTCAGTGCTATTGGTGAAGAGAGCTCCTGCAAGGAGATAATCGATAAACACATAATGCAATTGAAAGAACAAGCAAACGAGAAAGAGATAAAGGGAAGGAAGAGAAGAACACAAAAACACTTTCTCATCTGGTTTTGTCCCATCAAGCAAAAGGAGAAATACAGTGTGCATCTAGGAGAAGATCGAATGGATTGCAACAACAATCAACCAACAATGCATTTCCCAATGAGCATCAATCAAGTTGAATTGCTCAATGGACTGAATTTCAAAAAATGGAAAGGAGACATAGAACTCAACCTGGGAATATTGGACTTTGATCATGTGCTTAGAGAAGATCCACCTACTGAACTAACAGCAACGTCATCAAAGGAGGCCAAAGATAGGTACCTGCTGTGGCACAAACACAACAGGATGGCACTGATTTGTATGAAAAAGAGCATGACTGATGCTGTCAAAGGAGGTATACCAGATTCTGAATTTGCCAAAGTGTACTTCAATTCAATTGCTGAGAAGTACAAGGTTTCTGACAAGGCTGAGGTTAGCACACTGATGAACGCGCTGACTGGGATGAAATTTACTGGACAAGGAAGCATAAGGGAGTATATTATGAAAGGGATTGATATTGCTGCAAAACTGAAGAGCCTGAACATGAATATTGATGATCCTTTTCTGGTGCACATGCTACTGAATTCTTTCCCAGATCAATATAGTCACCTGAAGAGCCTCTATAACACACAGAAAGAAAAATGGAGTCTTAATGAGTTGATTTCCATTTGTGTGCAGGAAGAAGATGAAATGCTCAAAAGGGGAAAGGTAGTGAGCATTAACTACATTGCAAAGCCAAAGAATAAGAAAACCTTTGGCAACAAGAACTTTAAGGCCAGTTCATCAAAATCTCTTGTGAAGACTGATCTGTACAAAAACAAGTCTGTCAAAACAAATGGTCCAATGAAATGTTTCTTCTGCAAGAAATCAGGTCATTTCAAGAAGGACTGTGAGGGTTTTAAAAATTGGCTGAACAAGAAAGGGATTATCAAGCAAAACAATCCCAAACAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

360

Amino Acids

41.62

Weight (kDa)

9.43

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 114 - 275 5.1e-18 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 484
AccII CGCG 1 cut(s) 578
AclWI GGATC 2 cut(s) 350, 677
AcsI RAATTY 4 cut(s) 283, 497, 593, 709
AcuI CTGAAG 2 cut(s) 677, 758
AfaI GTAC 4 cut(s) 407, 512, 536, 938
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 6 cut(s) 85, 266, 289, 517, 522, 1006
AjnI CCWGG 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw21I GWGCWC 2 cut(s) 47, 699
Alw26I GTCTC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 695
AlwI GGATC 2 cut(s) 350, 677
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 2 cut(s) 393, 900
ApaLI GTGCAC 1 cut(s) 695
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 4 cut(s) 283, 497, 593, 709
Asp700I GAANNNNTTC 2 cut(s) 713, 977
Asp718I GGTACC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 965
AsuHPI GGTGA 2 cut(s) 47, 725
AvaII GGWCC 1 cut(s) 965
BaeGI GKGCMC 1 cut(s) 699
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 932
Bbv12I GWGCWC 2 cut(s) 47, 699
BbvCI CCTCAGC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 634
BccI CCATC 2 cut(s) 170, 427
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BciT130I CCWGG 1 cut(s) 320
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 965
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 320
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 3 cut(s) 199, 261, 457
BmuI ACTGGG 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 932
Bpu10I CCTNAGC 1 cut(s) 555
Bsa29I ATCGAT 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 589, 604, 903
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 438, 594
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 519, 546
BseNI ACTGG 3 cut(s) 589, 604, 903
BseSI GKGCMC 1 cut(s) 699
BseXI GCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 821
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 2 cut(s) 395, 902
BshNI GGYRCC 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 47, 699
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 2 cut(s) 395, 902
Bsp1286I GDGCHC 2 cut(s) 47, 699
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 6 cut(s) 202, 337, 355, 682, 721, 931
BspANI GGCC 2 cut(s) 395, 902
BspCNI CTCAG 2 cut(s) 520, 547
BspDI ATCGAT 1 cut(s) 63
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 1 cut(s) 407
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 350, 677
BspQI GCTCTTC 2 cut(s) 653, 734
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 852
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 3 cut(s) 589, 604, 903
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 6 cut(s) 202, 337, 355, 682, 721, 931
BssNAI GTATAC 1 cut(s) 485
Bst1107I GTATAC 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 185, 1016
Bst6I CTCTTC 4 cut(s) 33, 116, 653, 734
BstAUI TGTACA 1 cut(s) 936
BstDEI CTNAG 3 cut(s) 347, 528, 555
BstF5I GGATG 2 cut(s) 438, 594
BstFNI CGCG 1 cut(s) 578
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 6 cut(s) 205, 340, 358, 685, 724, 934
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 6 cut(s) 202, 337, 355, 682, 721, 931
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 699
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 1 cut(s) 932
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BstZ17I GTATAC 1 cut(s) 485
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 2 cut(s) 395, 902
BsuTUI ATCGAT 1 cut(s) 63
BtsCI GGATG 2 cut(s) 438, 594
BtsIMutI CAGTG 4 cut(s) 31, 190, 437, 566
BveI ACCTGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 965
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 4 cut(s) 406, 511, 535, 937
CviAII CATG 4 cut(s) 341, 460, 670, 700
CviJI RGCY 8 cut(s) 45, 395, 554, 663, 744, 862, 902, 1036
CviKI_1 RGCY 8 cut(s) 45, 395, 554, 663, 744, 862, 902, 1036
CviQI GTAC 4 cut(s) 406, 511, 535, 937
DdeI CTNAG 3 cut(s) 347, 528, 555
DpnI GATC 6 cut(s) 204, 339, 357, 684, 723, 933
DpnII GATC 6 cut(s) 202, 337, 355, 682, 721, 931
DraI TTTAAA 1 cut(s) 1027
Eam1104I CTCTTC 4 cut(s) 33, 116, 653, 734
EarI CTCTTC 4 cut(s) 33, 116, 653, 734
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 965
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 677, 758
EcoICRI GAGCTC 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 4 cut(s) 344, 463, 673, 703
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 1 cut(s) 144
FatI CATG 4 cut(s) 340, 459, 669, 699
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 2 cut(s) 445, 601
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 579
GluI GCNGC 1 cut(s) 648
HaeIII GGCC 2 cut(s) 395, 902
HhaI GCGC 1 cut(s) 580
Hin1II CATG 4 cut(s) 344, 463, 673, 703
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HinfI GANTC 2 cut(s) 491, 772
HphI GGTGA 2 cut(s) 47, 725
Hpy166II GTNNAC 3 cut(s) 485, 511, 697
Hpy188I TCNGA 2 cut(s) 496, 547
Hpy188III TCNNGA 1 cut(s) 1006
Hpy8I GTNNAC 3 cut(s) 485, 511, 697
HpyAV CCTTC 2 cut(s) 111, 1003
HpyCH4III ACNGT 2 cut(s) 185, 1016
HpyCH4IV ACGT 1 cut(s) 380
HpyF3I CTNAG 3 cut(s) 347, 528, 555
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 4 cut(s) 344, 463, 673, 703
HspAI GCGC 1 cut(s) 578
KpnI GGTACC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 6 cut(s) 202, 337, 355, 682, 721, 931
LguI GCTCTTC 2 cut(s) 653, 734
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 3 cut(s) 199, 261, 457
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 731
MalI GATC 6 cut(s) 204, 339, 357, 684, 723, 933
MboI GATC 6 cut(s) 202, 337, 355, 682, 721, 931
MfeI CAATTG 2 cut(s) 80, 522
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 47, 699
MluCI AATT 9 cut(s) 80, 266, 283, 497, 517, 522, 593, 709, 1030
MlyI GAGTC 1 cut(s) 781
MnlI CCTC 5 cut(s) 385, 473, 550, 755, 1012
Mph1103I ATGCAT 1 cut(s) 240
MroXI GAANNNNTTC 2 cut(s) 713, 977
MseI TTAA 4 cut(s) 777, 846, 897, 1026
MslI CAYNNNNRTG 2 cut(s) 569, 797
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 2 cut(s) 80, 522
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 578
NdeII GATC 6 cut(s) 202, 337, 355, 682, 721, 931
NlaIII CATG 4 cut(s) 344, 463, 673, 703
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 731
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 1 cut(s) 703
PciSI GCTCTTC 2 cut(s) 653, 734
PdmI GAANNNNTTC 2 cut(s) 713, 977
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 1 cut(s) 649
PleI GAGTC 1 cut(s) 780
PpsI GAGTC 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 965
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 4 cut(s) 407, 512, 536, 938
RsaNI GTAC 4 cut(s) 406, 511, 535, 937
RseI CAYNNNNRTG 2 cut(s) 569, 797
SacI GAGCTC 1 cut(s) 47
SapI GCTCTTC 2 cut(s) 653, 734
SaqAI TTAA 4 cut(s) 777, 846, 897, 1026
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 6 cut(s) 202, 337, 355, 682, 721, 931
Sau96I GGNCC 1 cut(s) 965
SchI GAGTC 1 cut(s) 781
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 2 cut(s) 47, 699
SfaNI GCATC 3 cut(s) 199, 261, 457
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 2 cut(s) 569, 797
Sse9I AATT 9 cut(s) 80, 266, 283, 497, 517, 522, 593, 709, 1030
SspI AATATT 2 cut(s) 327, 676
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 185, 1016
TaiI ACGT 1 cut(s) 383
TaqI TCGA 2 cut(s) 63, 205
TasI AATT 9 cut(s) 80, 266, 283, 497, 517, 522, 593, 709, 1030
TatI WGTACW 3 cut(s) 510, 534, 936
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 4 cut(s) 777, 846, 897, 1026
Tru9I TTAA 4 cut(s) 777, 846, 897, 1026
TscAI CASTG 4 cut(s) 31, 190, 444, 573
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 8 cut(s) 464, 587, 605, 644, 686, 828, 897, 986
TspRI CASTG 4 cut(s) 31, 190, 444, 573
VneI GTGCAC 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 4 cut(s) 283, 497, 593, 709
XceI RCATGY 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 484
XmnI GAANNNNTTC 2 cut(s) 713, 977
XspI CTAG 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.