Belongs to the GRAS family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 51 - 166 | 1e-12 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 327 |
| AcsI | RAATTY | 1 cut(s) | 491 |
| AcuI | CTGAAG | 1 cut(s) | 416 |
| AfaI | GTAC | 1 cut(s) | 278 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 65 |
| AflII | CTTAAG | 2 cut(s) | 431, 502 |
| AgsI | TTSAA | 3 cut(s) | 10, 64, 491 |
| AjnI | CCWGG | 1 cut(s) | 83 |
| AluBI | AGCT | 8 cut(s) | 113, 170, 208, 269, 293, 416, 421, 501 |
| AluI | AGCT | 8 cut(s) | 113, 170, 208, 269, 293, 416, 421, 501 |
| Alw26I | GTCTC | 1 cut(s) | 317 |
| Ama87I | CYCGRG | 1 cut(s) | 254 |
| AoxI | GGCC | 1 cut(s) | 327 |
| ApeKI | GCWGC | 1 cut(s) | 167 |
| ApoI | RAATTY | 1 cut(s) | 491 |
| AspS9I | GGNCC | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 1 cut(s) | 196 |
| AvaI | CYCGRG | 1 cut(s) | 254 |
| AvaII | GGWCC | 1 cut(s) | 81 |
| BbsI | GAAGAC | 1 cut(s) | 456 |
| BbvI | GCAGC | 1 cut(s) | 179 |
| BceAI | ACGGC | 1 cut(s) | 342 |
| BciT130I | CCWGG | 1 cut(s) | 85 |
| BcoDI | GTCTC | 1 cut(s) | 317 |
| BfaI | CTAG | 4 cut(s) | 110, 171, 270, 467 |
| BfmI | CTRYAG | 1 cut(s) | 76 |
| BfrI | CTTAAG | 2 cut(s) | 431, 502 |
| BisI | GCNGC | 1 cut(s) | 168 |
| BlpI | GCTNAGC | 1 cut(s) | 417 |
| BlsI | GCNGC | 1 cut(s) | 169 |
| Bme1390I | CCNGG | 1 cut(s) | 85 |
| Bme18I | GGWCC | 1 cut(s) | 81 |
| BmeT110I | CYCGRG | 1 cut(s) | 254 |
| BmgT120I | GGNCC | 1 cut(s) | 81 |
| BmrFI | CCNGG | 1 cut(s) | 85 |
| BmrI | ACTGGG | 1 cut(s) | 190 |
| BmsI | GCATC | 2 cut(s) | 45, 453 |
| BmuI | ACTGGG | 1 cut(s) | 190 |
| BpiI | GAAGAC | 1 cut(s) | 456 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 405, 437 |
| BpmI | CTGGAG | 1 cut(s) | 106 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 417 |
| BsaBI | GATNNNNATC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 441 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 65 |
| Bse1I | ACTGG | 2 cut(s) | 185, 343 |
| Bse8I | GATNNNNATC | 1 cut(s) | 377 |
| BseBI | CCWGG | 1 cut(s) | 85 |
| BseDI | CCNNGG | 1 cut(s) | 441 |
| BseJI | GATNNNNATC | 1 cut(s) | 377 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseMII | CTCAG | 4 cut(s) | 128, 285, 312, 535 |
| BseNI | ACTGG | 2 cut(s) | 185, 343 |
| BseXI | GCAGC | 1 cut(s) | 179 |
| BsgI | GTGCAG | 1 cut(s) | 186 |
| BshFI | GGCC | 1 cut(s) | 329 |
| BsiHKCI | CYCGRG | 1 cut(s) | 254 |
| BslFI | GGGAC | 1 cut(s) | 128 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BsmAI | GTCTC | 1 cut(s) | 317 |
| BsmBI | CGTCTC | 1 cut(s) | 317 |
| BsmFI | GGGAC | 1 cut(s) | 128 |
| BsmI | GAATGC | 1 cut(s) | 249 |
| BsnI | GGCC | 1 cut(s) | 329 |
| BsoBI | CYCGRG | 1 cut(s) | 254 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 417 |
| Bsp19I | CCATGG | 1 cut(s) | 441 |
| BspANI | GGCC | 1 cut(s) | 329 |
| BspCNI | CTCAG | 4 cut(s) | 129, 286, 313, 534 |
| BspTI | CTTAAG | 2 cut(s) | 431, 502 |
| BsrI | ACTGG | 2 cut(s) | 185, 343 |
| BssECI | CCNNGG | 1 cut(s) | 441 |
| BssT1I | CCWWGG | 1 cut(s) | 441 |
| Bst2UI | CCWGG | 1 cut(s) | 85 |
| BstAFI | CTTAAG | 2 cut(s) | 431, 502 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 5 cut(s) | 137, 294, 321, 417, 521 |
| BstDSI | CCRYGG | 1 cut(s) | 441 |
| BstMAI | GTCTC | 1 cut(s) | 317 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 326 |
| BstNI | CCWGG | 1 cut(s) | 85 |
| BstSCI | CCNGG | 1 cut(s) | 83 |
| BstSFI | CTRYAG | 1 cut(s) | 76 |
| BstV1I | GCAGC | 1 cut(s) | 179 |
| BstV2I | GAAGAC | 1 cut(s) | 456 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 350 |
| BsuRI | GGCC | 1 cut(s) | 329 |
| BtgI | CCRYGG | 1 cut(s) | 441 |
| BtsI | GCAGTG | 1 cut(s) | 423 |
| BtsIMutI | CAGTG | 1 cut(s) | 423 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| Cfr13I | GGNCC | 1 cut(s) | 81 |
| Csp6I | GTAC | 1 cut(s) | 277 |
| CviAII | CATG | 5 cut(s) | 13, 331, 350, 442, 454 |
| CviQI | GTAC | 1 cut(s) | 277 |
| DdeI | CTNAG | 5 cut(s) | 137, 294, 321, 417, 521 |
| EaeI | YGGCCR | 1 cut(s) | 327 |
| Eco130I | CCWWGG | 1 cut(s) | 441 |
| Eco47I | GGWCC | 1 cut(s) | 81 |
| Eco57I | CTGAAG | 1 cut(s) | 416 |
| Eco88I | CYCGRG | 1 cut(s) | 254 |
| EcoO109I | RGGNCCY | 1 cut(s) | 81 |
| EcoRII | CCWGG | 1 cut(s) | 83 |
| EcoT14I | CCWWGG | 1 cut(s) | 441 |
| ErhI | CCWWGG | 1 cut(s) | 441 |
| Esp3I | CGTCTC | 1 cut(s) | 317 |
| FaeI | CATG | 5 cut(s) | 16, 334, 353, 445, 457 |
| FaqI | GGGAC | 1 cut(s) | 128 |
| FatI | CATG | 5 cut(s) | 12, 330, 349, 441, 453 |
| Fnu4HI | GCNGC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 1 cut(s) | 168 |
| FspBI | CTAG | 4 cut(s) | 110, 171, 270, 467 |
| GluI | GCNGC | 1 cut(s) | 168 |
| GsuI | CTGGAG | 1 cut(s) | 106 |
| HaeIII | GGCC | 1 cut(s) | 329 |
| Hin1II | CATG | 5 cut(s) | 16, 334, 353, 445, 457 |
| HinfI | GANTC | 1 cut(s) | 31 |
| HphI | GGTGA | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 2 cut(s) | 303, 536 |
| Hpy188I | TCNGA | 5 cut(s) | 138, 232, 396, 474, 524 |
| Hpy188III | TCNNGA | 2 cut(s) | 254, 304 |
| Hpy8I | GTNNAC | 2 cut(s) | 303, 536 |
| HpyCH4IV | ACGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 2 cut(s) | 167, 349 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 326 |
| HpyF3I | CTNAG | 5 cut(s) | 137, 294, 321, 417, 521 |
| HpySE526I | ACGT | 1 cut(s) | 42 |
| Hsp92II | CATG | 5 cut(s) | 16, 334, 353, 445, 457 |
| LmnI | GCTCC | 1 cut(s) | 413 |
| LpnPI | CCDG | 8 cut(s) | 70, 97, 116, 165, 166, 356, 367, 498 |
| Lsp1109I | GCAGC | 1 cut(s) | 179 |
| LweI | GCATC | 2 cut(s) | 45, 453 |
| MaeI | CTAG | 4 cut(s) | 110, 171, 270, 467 |
| MaeII | ACGT | 1 cut(s) | 42 |
| MaeIII | GTNAC | 1 cut(s) | 311 |
| MboII | GAAGA | 3 cut(s) | 382, 409, 461 |
| MluCI | AATT | 1 cut(s) | 491 |
| MlyI | GAGTC | 1 cut(s) | 25 |
| MnlI | CCTC | 5 cut(s) | 213, 291, 351, 439, 491 |
| MseI | TTAA | 2 cut(s) | 432, 503 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 458 |
| MspCI | CTTAAG | 2 cut(s) | 431, 502 |
| MspR9I | CCNGG | 1 cut(s) | 85 |
| Mva1269I | GAATGC | 1 cut(s) | 249 |
| MvaI | CCWGG | 1 cut(s) | 85 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 326 |
| NcoI | CCATGG | 1 cut(s) | 441 |
| NlaIII | CATG | 5 cut(s) | 16, 334, 353, 445, 457 |
| NmuCI | GTSAC | 1 cut(s) | 311 |
| PctI | GAATGC | 1 cut(s) | 249 |
| PflFI | GACNNNGTC | 1 cut(s) | 226 |
| PkrI | GCNGC | 1 cut(s) | 169 |
| PleI | GAGTC | 1 cut(s) | 25 |
| PpsI | GAGTC | 1 cut(s) | 25 |
| PpuMI | RGGWCCY | 1 cut(s) | 81 |
| Psp5II | RGGWCCY | 1 cut(s) | 81 |
| Psp6I | CCWGG | 1 cut(s) | 83 |
| PspGI | CCWGG | 1 cut(s) | 83 |
| PspPI | GGNCC | 1 cut(s) | 81 |
| PspPPI | RGGWCCY | 1 cut(s) | 81 |
| PsyI | GACNNNGTC | 1 cut(s) | 226 |
| RsaI | GTAC | 1 cut(s) | 278 |
| RsaNI | GTAC | 1 cut(s) | 277 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 458 |
| SaqAI | TTAA | 2 cut(s) | 432, 503 |
| SatI | GCNGC | 1 cut(s) | 168 |
| Sau96I | GGNCC | 1 cut(s) | 81 |
| SchI | GAGTC | 1 cut(s) | 25 |
| ScrFI | CCNGG | 1 cut(s) | 85 |
| SfaNI | GCATC | 2 cut(s) | 45, 453 |
| SfcI | CTRYAG | 1 cut(s) | 76 |
| SinI | GGWCC | 1 cut(s) | 81 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 458 |
| SmlI | CTYRAG | 2 cut(s) | 431, 502 |
| SmoI | CTYRAG | 2 cut(s) | 431, 502 |
| Sse9I | AATT | 1 cut(s) | 491 |
| SspMI | CTAG | 4 cut(s) | 110, 171, 270, 467 |
| StyD4I | CCNGG | 1 cut(s) | 83 |
| StyI | CCWWGG | 1 cut(s) | 441 |
| TaiI | ACGT | 1 cut(s) | 45 |
| TasI | AATT | 1 cut(s) | 491 |
| Tru1I | TTAA | 2 cut(s) | 432, 503 |
| Tru9I | TTAA | 2 cut(s) | 432, 503 |
| TscAI | CASTG | 1 cut(s) | 430 |
| TseFI | GTSAC | 1 cut(s) | 311 |
| TseI | GCWGC | 1 cut(s) | 167 |
| Tsp45I | GTSAC | 1 cut(s) | 311 |
| TspDTI | ATGAA | 4 cut(s) | 29, 53, 383, 389 |
| TspRI | CASTG | 1 cut(s) | 430 |
| Tth111I | GACNNNGTC | 1 cut(s) | 226 |
| Vha464I | CTTAAG | 2 cut(s) | 431, 502 |
| VpaK11BI | GGWCC | 1 cut(s) | 81 |
| XapI | RAATTY | 1 cut(s) | 491 |
| XspI | CTAG | 4 cut(s) | 110, 171, 270, 467 |