gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 49 - 191 | 1.7e-11 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 842 |
| AciI | CCGC | 1 cut(s) | 681 |
| AclWI | GGATC | 1 cut(s) | 460 |
| AcsI | RAATTY | 3 cut(s) | 49, 315, 661 |
| AcuI | CTGAAG | 2 cut(s) | 308, 515 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 41, 485, 713 |
| AgsI | TTSAA | 2 cut(s) | 136, 535 |
| AjnI | CCWGG | 1 cut(s) | 736 |
| AluBI | AGCT | 5 cut(s) | 79, 337, 541, 571, 641 |
| AluI | AGCT | 5 cut(s) | 79, 337, 541, 571, 641 |
| AlwI | GGATC | 1 cut(s) | 460 |
| AoxI | GGCC | 4 cut(s) | 88, 283, 459, 487 |
| ApeKI | GCWGC | 1 cut(s) | 656 |
| ApoI | RAATTY | 3 cut(s) | 49, 315, 661 |
| AspS9I | GGNCC | 4 cut(s) | 180, 460, 488, 704 |
| AsuHPI | GGTGA | 5 cut(s) | 213, 241, 428, 680, 826 |
| AvaII | GGWCC | 2 cut(s) | 180, 704 |
| BaeGI | GKGCMC | 3 cut(s) | 677, 777, 845 |
| BanI | GGYRCC | 1 cut(s) | 842 |
| BbsI | GAAGAC | 2 cut(s) | 464, 503 |
| BbvI | GCAGC | 1 cut(s) | 643 |
| BceAI | ACGGC | 1 cut(s) | 273 |
| BciT130I | CCWGG | 1 cut(s) | 738 |
| BfaI | CTAG | 5 cut(s) | 329, 408, 480, 605, 651 |
| BfmI | CTRYAG | 1 cut(s) | 642 |
| BisI | GCNGC | 1 cut(s) | 657 |
| BlsI | GCNGC | 1 cut(s) | 658 |
| Bme1390I | CCNGG | 1 cut(s) | 738 |
| Bme18I | GGWCC | 2 cut(s) | 180, 704 |
| BmgT120I | GGNCC | 4 cut(s) | 180, 460, 488, 704 |
| BmiI | GGNNCC | 2 cut(s) | 120, 844 |
| BmrFI | CCNGG | 1 cut(s) | 738 |
| BmsI | GCATC | 1 cut(s) | 430 |
| BpiI | GAAGAC | 2 cut(s) | 464, 503 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 106, 138 |
| BsaJI | CCNNGG | 3 cut(s) | 94, 737, 846 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 41, 485, 713 |
| Bse1I | ACTGG | 1 cut(s) | 128 |
| BseBI | CCWGG | 1 cut(s) | 738 |
| BseDI | CCNNGG | 3 cut(s) | 94, 737, 846 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 41, 485, 713 |
| BseMII | CTCAG | 2 cut(s) | 135, 375 |
| BseNI | ACTGG | 1 cut(s) | 128 |
| BseSI | GKGCMC | 3 cut(s) | 677, 777, 845 |
| BseXI | GCAGC | 1 cut(s) | 643 |
| BsgI | GTGCAG | 2 cut(s) | 5, 578 |
| BshFI | GGCC | 4 cut(s) | 90, 285, 461, 489 |
| BshNI | GGYRCC | 1 cut(s) | 842 |
| BslFI | GGGAC | 2 cut(s) | 697, 754 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 41, 485, 713 |
| BsmFI | GGGAC | 2 cut(s) | 697, 754 |
| BsmI | GAATGC | 1 cut(s) | 431 |
| BsnI | GGCC | 4 cut(s) | 90, 285, 461, 489 |
| Bsp1286I | GDGCHC | 3 cut(s) | 677, 777, 845 |
| Bsp143I | GATC | 2 cut(s) | 331, 465 |
| BspACI | CCGC | 1 cut(s) | 681 |
| BspANI | GGCC | 4 cut(s) | 90, 285, 461, 489 |
| BspCNI | CTCAG | 2 cut(s) | 136, 374 |
| BspLI | GGNNCC | 2 cut(s) | 120, 844 |
| BspPI | GGATC | 1 cut(s) | 460 |
| BspQI | GCTCTTC | 1 cut(s) | 561 |
| BspT107I | GGYRCC | 1 cut(s) | 842 |
| BsrI | ACTGG | 1 cut(s) | 128 |
| BssECI | CCNNGG | 3 cut(s) | 94, 737, 846 |
| BssMI | GATC | 2 cut(s) | 331, 465 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 846 |
| Bst2UI | CCWGG | 1 cut(s) | 738 |
| Bst4CI | ACNGT | 2 cut(s) | 592, 791 |
| Bst6I | CTCTTC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 4 cut(s) | 144, 361, 687, 708 |
| BstKTI | GATC | 2 cut(s) | 334, 468 |
| BstMBI | GATC | 2 cut(s) | 331, 465 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 76, 653 |
| BstNI | CCWGG | 1 cut(s) | 738 |
| BstSCI | CCNGG | 1 cut(s) | 736 |
| BstSFI | CTRYAG | 1 cut(s) | 642 |
| BstSLI | GKGCMC | 3 cut(s) | 677, 777, 845 |
| BstV1I | GCAGC | 1 cut(s) | 643 |
| BstV2I | GAAGAC | 2 cut(s) | 464, 503 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 190 |
| BsuRI | GGCC | 4 cut(s) | 90, 285, 461, 489 |
| BtsIMutI | CAGTG | 1 cut(s) | 491 |
| Cfr13I | GGNCC | 4 cut(s) | 180, 460, 488, 704 |
| CseI | GACGC | 1 cut(s) | 636 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 394, 429 |
| CviAII | CATG | 3 cut(s) | 60, 217, 346 |
| DdeI | CTNAG | 4 cut(s) | 144, 361, 687, 708 |
| DpnI | GATC | 2 cut(s) | 333, 467 |
| DpnII | GATC | 2 cut(s) | 331, 465 |
| DraI | TTTAAA | 3 cut(s) | 55, 295, 802 |
| Eam1104I | CTCTTC | 1 cut(s) | 561 |
| EarI | CTCTTC | 1 cut(s) | 561 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 846 |
| Eco47I | GGWCC | 2 cut(s) | 180, 704 |
| Eco57I | CTGAAG | 2 cut(s) | 308, 515 |
| EcoRII | CCWGG | 1 cut(s) | 736 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 846 |
| ErhI | CCWWGG | 2 cut(s) | 94, 846 |
| FaeI | CATG | 3 cut(s) | 63, 220, 349 |
| FaqI | GGGAC | 2 cut(s) | 697, 754 |
| FatI | CATG | 3 cut(s) | 59, 216, 345 |
| FauI | CCCGC | 1 cut(s) | 674 |
| Fnu4HI | GCNGC | 1 cut(s) | 657 |
| Fsp4HI | GCNGC | 1 cut(s) | 657 |
| FspBI | CTAG | 5 cut(s) | 329, 408, 480, 605, 651 |
| GluI | GCNGC | 1 cut(s) | 657 |
| HaeIII | GGCC | 4 cut(s) | 90, 285, 461, 489 |
| HgaI | GACGC | 1 cut(s) | 636 |
| Hin1II | CATG | 3 cut(s) | 63, 220, 349 |
| HincII | GTYRAC | 1 cut(s) | 610 |
| HindII | GTYRAC | 1 cut(s) | 610 |
| HinfI | GANTC | 1 cut(s) | 601 |
| HpaI | GTTAAC | 1 cut(s) | 610 |
| HphI | GGTGA | 5 cut(s) | 213, 241, 428, 680, 826 |
| Hpy166II | GTNNAC | 2 cut(s) | 454, 610 |
| Hpy188I | TCNGA | 2 cut(s) | 364, 439 |
| Hpy8I | GTNNAC | 2 cut(s) | 454, 610 |
| HpyAV | CCTTC | 6 cut(s) | 454, 511, 619, 706, 760, 764 |
| HpyCH4III | ACNGT | 2 cut(s) | 592, 791 |
| HpyCH4V | TGCA | 6 cut(s) | 22, 431, 503, 559, 659, 762 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 76, 653 |
| HpyF3I | CTNAG | 4 cut(s) | 144, 361, 687, 708 |
| Hsp92II | CATG | 3 cut(s) | 63, 220, 349 |
| KspAI | GTTAAC | 1 cut(s) | 610 |
| Kzo9I | GATC | 2 cut(s) | 331, 465 |
| LguI | GCTCTTC | 1 cut(s) | 561 |
| LmnI | GCTCC | 2 cut(s) | 118, 376 |
| Lsp1109I | GCAGC | 1 cut(s) | 643 |
| LweI | GCATC | 1 cut(s) | 430 |
| MaeI | CTAG | 5 cut(s) | 329, 408, 480, 605, 651 |
| MaeIII | GTNAC | 1 cut(s) | 219 |
| MalI | GATC | 2 cut(s) | 333, 467 |
| MboI | GATC | 2 cut(s) | 331, 465 |
| MboII | GAAGA | 4 cut(s) | 464, 508, 575, 578 |
| MhlI | GDGCHC | 3 cut(s) | 677, 777, 845 |
| MluCI | AATT | 9 cut(s) | 49, 153, 201, 315, 390, 419, 549, 573, 661 |
| MseI | TTAA | 8 cut(s) | 39, 54, 294, 576, 609, 747, 780, 801 |
| MslI | CAYNNNNRTG | 1 cut(s) | 748 |
| MspR9I | CCNGG | 1 cut(s) | 738 |
| Mva1269I | GAATGC | 1 cut(s) | 431 |
| MvaI | CCWGG | 1 cut(s) | 738 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 76, 653 |
| NdeII | GATC | 2 cut(s) | 331, 465 |
| NlaIII | CATG | 3 cut(s) | 63, 220, 349 |
| NlaIV | GGNNCC | 2 cut(s) | 120, 844 |
| NmuCI | GTSAC | 1 cut(s) | 219 |
| PciSI | GCTCTTC | 1 cut(s) | 561 |
| PctI | GAATGC | 1 cut(s) | 431 |
| PfeI | GAWTC | 1 cut(s) | 601 |
| PflFI | GACNNNGTC | 1 cut(s) | 592 |
| PkrI | GCNGC | 1 cut(s) | 658 |
| Psp6I | CCWGG | 1 cut(s) | 736 |
| PspGI | CCWGG | 1 cut(s) | 736 |
| PspN4I | GGNNCC | 2 cut(s) | 120, 844 |
| PspPI | GGNCC | 4 cut(s) | 180, 460, 488, 704 |
| PsyI | GACNNNGTC | 1 cut(s) | 592 |
| RseI | CAYNNNNRTG | 1 cut(s) | 748 |
| SapI | GCTCTTC | 1 cut(s) | 561 |
| SaqAI | TTAA | 8 cut(s) | 39, 54, 294, 576, 609, 747, 780, 801 |
| SatI | GCNGC | 1 cut(s) | 657 |
| Sau3AI | GATC | 2 cut(s) | 331, 465 |
| Sau96I | GGNCC | 4 cut(s) | 180, 460, 488, 704 |
| ScrFI | CCNGG | 1 cut(s) | 738 |
| SduI | GDGCHC | 3 cut(s) | 677, 777, 845 |
| SetI | ASST | 9 cut(s) | 81, 226, 253, 339, 362, 543, 573, 643, 739 |
| SfaNI | GCATC | 1 cut(s) | 430 |
| SfcI | CTRYAG | 1 cut(s) | 642 |
| SinI | GGWCC | 2 cut(s) | 180, 704 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 748 |
| Sse9I | AATT | 9 cut(s) | 49, 153, 201, 315, 390, 419, 549, 573, 661 |
| SsiI | CCGC | 1 cut(s) | 681 |
| SspMI | CTAG | 5 cut(s) | 329, 408, 480, 605, 651 |
| StyD4I | CCNGG | 1 cut(s) | 736 |
| StyI | CCWWGG | 2 cut(s) | 94, 846 |
| TaaI | ACNGT | 2 cut(s) | 592, 791 |
| TasI | AATT | 9 cut(s) | 49, 153, 201, 315, 390, 419, 549, 573, 661 |
| TfiI | GAWTC | 1 cut(s) | 601 |
| Tru1I | TTAA | 8 cut(s) | 39, 54, 294, 576, 609, 747, 780, 801 |
| Tru9I | TTAA | 8 cut(s) | 39, 54, 294, 576, 609, 747, 780, 801 |
| TscAI | CASTG | 1 cut(s) | 498 |
| TseFI | GTSAC | 1 cut(s) | 219 |
| TseI | GCWGC | 1 cut(s) | 656 |
| Tsp45I | GTSAC | 1 cut(s) | 219 |
| TspDTI | ATGAA | 7 cut(s) | 17, 153, 221, 362, 401, 436, 818 |
| TspGWI | ACGGA | 1 cut(s) | 458 |
| TspRI | CASTG | 1 cut(s) | 498 |
| Tth111I | GACNNNGTC | 1 cut(s) | 592 |
| VpaK11BI | GGWCC | 2 cut(s) | 180, 704 |
| XapI | RAATTY | 3 cut(s) | 49, 315, 661 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XspI | CTAG | 5 cut(s) | 329, 408, 480, 605, 651 |