gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 52 - 201 | 5.4e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 56, 309 |
| AccB1I | GGYRCC | 3 cut(s) | 14, 56, 309 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 645 |
| AcuI | CTGAAG | 1 cut(s) | 89 |
| AfaI | GTAC | 2 cut(s) | 58, 311 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 514, 645 |
| AgsI | TTSAA | 2 cut(s) | 778, 799 |
| AjnI | CCWGG | 2 cut(s) | 10, 766 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 737, 769 |
| AluBI | AGCT | 5 cut(s) | 422, 430, 497, 511, 661 |
| AluI | AGCT | 5 cut(s) | 422, 430, 497, 511, 661 |
| Alw21I | GWGCWC | 2 cut(s) | 161, 842 |
| Alw26I | GTCTC | 1 cut(s) | 236 |
| AoxI | GGCC | 3 cut(s) | 210, 723, 741 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| Asp718I | GGTACC | 2 cut(s) | 56, 309 |
| AspS9I | GGNCC | 2 cut(s) | 211, 469 |
| AsuHPI | GGTGA | 3 cut(s) | 229, 467, 529 |
| AvaII | GGWCC | 1 cut(s) | 469 |
| BaeGI | GKGCMC | 1 cut(s) | 19 |
| BanI | GGYRCC | 3 cut(s) | 14, 56, 309 |
| Bbv12I | GWGCWC | 2 cut(s) | 161, 842 |
| BccI | CCATC | 5 cut(s) | 28, 202, 368, 480, 575 |
| BciT130I | CCWGG | 2 cut(s) | 12, 768 |
| BciVI | GTATCC | 1 cut(s) | 269 |
| BclI | TGATCA | 1 cut(s) | 457 |
| BcoDI | GTCTC | 1 cut(s) | 236 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BfmI | CTRYAG | 3 cut(s) | 290, 687, 757 |
| BfuI | GTATCC | 1 cut(s) | 269 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 2 cut(s) | 12, 768 |
| Bme18I | GGWCC | 1 cut(s) | 469 |
| BmgT120I | GGNCC | 2 cut(s) | 211, 469 |
| BmiI | GGNNCC | 3 cut(s) | 16, 58, 311 |
| BmrFI | CCNGG | 2 cut(s) | 12, 768 |
| BpuEI | CTTGAG | 2 cut(s) | 145, 497 |
| BsaJI | CCNNGG | 1 cut(s) | 843 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 685, 715 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 514, 645 |
| Bse1I | ACTGG | 2 cut(s) | 58, 194 |
| BseBI | CCWGG | 2 cut(s) | 12, 768 |
| BseDI | CCNNGG | 1 cut(s) | 843 |
| BseGI | GGATG | 2 cut(s) | 20, 213 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 514, 645 |
| BseMII | CTCAG | 4 cut(s) | 144, 261, 321, 445 |
| BseNI | ACTGG | 2 cut(s) | 58, 194 |
| BseSI | GKGCMC | 1 cut(s) | 19 |
| BseYI | CCCAGC | 1 cut(s) | 507 |
| BsgI | GTGCAG | 2 cut(s) | 690, 699 |
| BshFI | GGCC | 3 cut(s) | 212, 725, 743 |
| BshNI | GGYRCC | 3 cut(s) | 14, 56, 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 161, 842 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 514, 645 |
| BsmAI | GTCTC | 1 cut(s) | 236 |
| BsmI | GAATGC | 3 cut(s) | 280, 349, 387 |
| BsnI | GGCC | 3 cut(s) | 212, 725, 743 |
| Bsp1286I | GDGCHC | 3 cut(s) | 19, 161, 842 |
| Bsp143I | GATC | 1 cut(s) | 457 |
| BspANI | GGCC | 3 cut(s) | 212, 725, 743 |
| BspCNI | CTCAG | 4 cut(s) | 145, 262, 322, 444 |
| BspHI | TCATGA | 1 cut(s) | 402 |
| BspLI | GGNNCC | 3 cut(s) | 16, 58, 311 |
| BspMAI | CTGCAG | 1 cut(s) | 294 |
| BspT107I | GGYRCC | 3 cut(s) | 14, 56, 309 |
| BsrI | ACTGG | 2 cut(s) | 58, 194 |
| BssECI | CCNNGG | 1 cut(s) | 843 |
| BssMI | GATC | 1 cut(s) | 457 |
| BssT1I | CCWWGG | 1 cut(s) | 843 |
| Bst2UI | CCWGG | 2 cut(s) | 12, 768 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 788 |
| Bst6I | CTCTTC | 4 cut(s) | 162, 221, 576, 668 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 713 |
| BstC8I | GCNNGC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 8 cut(s) | 153, 177, 270, 280, 330, 431, 593, 669 |
| BstF5I | GGATG | 2 cut(s) | 20, 213 |
| BstKTI | GATC | 1 cut(s) | 460 |
| BstMAI | GTCTC | 1 cut(s) | 236 |
| BstMBI | GATC | 1 cut(s) | 457 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 14, 384, 605, 713, 722 |
| BstNI | CCWGG | 2 cut(s) | 12, 768 |
| BstSCI | CCNGG | 2 cut(s) | 10, 766 |
| BstSFI | CTRYAG | 3 cut(s) | 290, 687, 757 |
| BstSLI | GKGCMC | 1 cut(s) | 19 |
| BsuI | GTATCC | 1 cut(s) | 269 |
| BsuRI | GGCC | 3 cut(s) | 212, 725, 743 |
| BtsCI | GGATG | 2 cut(s) | 20, 213 |
| BtsI | GCAGTG | 1 cut(s) | 147 |
| BtsIMutI | CAGTG | 2 cut(s) | 147, 345 |
| Cac8I | GCNNGC | 1 cut(s) | 495 |
| CciI | TCATGA | 1 cut(s) | 402 |
| Cfr13I | GGNCC | 2 cut(s) | 211, 469 |
| Csp6I | GTAC | 2 cut(s) | 57, 310 |
| CviAII | CATG | 1 cut(s) | 403 |
| CviQI | GTAC | 2 cut(s) | 57, 310 |
| DdeI | CTNAG | 8 cut(s) | 153, 177, 270, 280, 330, 431, 593, 669 |
| DpnI | GATC | 1 cut(s) | 459 |
| DpnII | GATC | 1 cut(s) | 457 |
| Eam1104I | CTCTTC | 4 cut(s) | 162, 221, 576, 668 |
| EarI | CTCTTC | 4 cut(s) | 162, 221, 576, 668 |
| Eco130I | CCWWGG | 1 cut(s) | 843 |
| Eco47I | GGWCC | 1 cut(s) | 469 |
| Eco57I | CTGAAG | 1 cut(s) | 89 |
| EcoRII | CCWGG | 2 cut(s) | 10, 766 |
| EcoT14I | CCWWGG | 1 cut(s) | 843 |
| EcoT22I | ATGCAT | 1 cut(s) | 351 |
| ErhI | CCWWGG | 1 cut(s) | 843 |
| FaeI | CATG | 1 cut(s) | 406 |
| FaiI | YATR | 8 cut(s) | 86, 114, 183, 224, 347, 404, 683, 720 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 737, 769 |
| FatI | CATG | 1 cut(s) | 402 |
| FbaI | TGATCA | 1 cut(s) | 457 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 2 cut(s) | 7, 220 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 1 cut(s) | 98 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsaI | CCCAGC | 1 cut(s) | 511 |
| HaeIII | GGCC | 3 cut(s) | 212, 725, 743 |
| Hin1II | CATG | 1 cut(s) | 406 |
| HincII | GTYRAC | 1 cut(s) | 826 |
| HindII | GTYRAC | 1 cut(s) | 826 |
| HinfI | GANTC | 3 cut(s) | 317, 332, 676 |
| HpaI | GTTAAC | 1 cut(s) | 826 |
| HphI | GGTGA | 3 cut(s) | 229, 467, 529 |
| Hpy166II | GTNNAC | 3 cut(s) | 620, 628, 826 |
| Hpy188I | TCNGA | 3 cut(s) | 304, 322, 434 |
| Hpy188III | TCNNGA | 4 cut(s) | 392, 403, 578, 778 |
| Hpy8I | GTNNAC | 3 cut(s) | 620, 628, 826 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 788 |
| HpyCH4V | TGCA | 5 cut(s) | 95, 292, 349, 707, 716 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 14, 384, 605, 713, 722 |
| HpyF3I | CTNAG | 8 cut(s) | 153, 177, 270, 280, 330, 431, 593, 669 |
| Hsp92II | CATG | 1 cut(s) | 406 |
| KpnI | GGTACC | 2 cut(s) | 60, 313 |
| Ksp22I | TGATCA | 1 cut(s) | 457 |
| KspAI | GTTAAC | 1 cut(s) | 826 |
| Kzo9I | GATC | 1 cut(s) | 457 |
| LmnI | GCTCC | 1 cut(s) | 13 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MaeIII | GTNAC | 4 cut(s) | 145, 358, 517, 691 |
| MalI | GATC | 1 cut(s) | 459 |
| MboI | GATC | 1 cut(s) | 457 |
| MboII | GAAGA | 6 cut(s) | 179, 238, 593, 661, 685, 745 |
| MfeI | CAATTG | 1 cut(s) | 47 |
| MhlI | GDGCHC | 3 cut(s) | 19, 161, 842 |
| MluCI | AATT | 4 cut(s) | 47, 442, 461, 561 |
| MlyI | GAGTC | 3 cut(s) | 326, 341, 685 |
| MmeI | TCCRAC | 1 cut(s) | 53 |
| MnlI | CCTC | 5 cut(s) | 245, 399, 442, 449, 812 |
| Mph1103I | ATGCAT | 1 cut(s) | 351 |
| MseI | TTAA | 2 cut(s) | 66, 825 |
| MspA1I | CMGCKG | 1 cut(s) | 497 |
| MspR9I | CCNGG | 2 cut(s) | 12, 768 |
| MunI | CAATTG | 1 cut(s) | 47 |
| Mva1269I | GAATGC | 3 cut(s) | 280, 349, 387 |
| MvaI | CCWGG | 2 cut(s) | 12, 768 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 14, 384, 605, 713, 722 |
| NdeII | GATC | 1 cut(s) | 457 |
| NlaIII | CATG | 1 cut(s) | 406 |
| NlaIV | GGNNCC | 3 cut(s) | 16, 58, 311 |
| NmuCI | GTSAC | 3 cut(s) | 145, 358, 517 |
| NsiI | ATGCAT | 1 cut(s) | 351 |
| PagI | TCATGA | 1 cut(s) | 402 |
| PctI | GAATGC | 3 cut(s) | 280, 349, 387 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 645 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PleI | GAGTC | 3 cut(s) | 325, 340, 684 |
| PpsI | GAGTC | 3 cut(s) | 325, 340, 684 |
| Psp6I | CCWGG | 2 cut(s) | 10, 766 |
| PspFI | CCCAGC | 1 cut(s) | 507 |
| PspGI | CCWGG | 2 cut(s) | 10, 766 |
| PspN4I | GGNNCC | 3 cut(s) | 16, 58, 311 |
| PspPI | GGNCC | 2 cut(s) | 211, 469 |
| PstI | CTGCAG | 1 cut(s) | 294 |
| PvuII | CAGCTG | 1 cut(s) | 497 |
| RsaI | GTAC | 2 cut(s) | 58, 311 |
| RsaNI | GTAC | 2 cut(s) | 57, 310 |
| SaqAI | TTAA | 2 cut(s) | 66, 825 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 1 cut(s) | 457 |
| Sau96I | GGNCC | 2 cut(s) | 211, 469 |
| SchI | GAGTC | 3 cut(s) | 326, 341, 685 |
| ScrFI | CCNGG | 2 cut(s) | 12, 768 |
| SduI | GDGCHC | 3 cut(s) | 19, 161, 842 |
| SfcI | CTRYAG | 3 cut(s) | 290, 687, 757 |
| SinI | GGWCC | 1 cut(s) | 469 |
| SmlI | CTYRAG | 2 cut(s) | 124, 512 |
| SmoI | CTYRAG | 2 cut(s) | 124, 512 |
| Sse9I | AATT | 4 cut(s) | 47, 442, 461, 561 |
| SspMI | CTAG | 1 cut(s) | 98 |
| StyD4I | CCNGG | 2 cut(s) | 10, 766 |
| StyI | CCWWGG | 1 cut(s) | 843 |
| TaaI | ACNGT | 2 cut(s) | 247, 788 |
| TasI | AATT | 4 cut(s) | 47, 442, 461, 561 |
| Tru1I | TTAA | 2 cut(s) | 66, 825 |
| Tru9I | TTAA | 2 cut(s) | 66, 825 |
| TscAI | CASTG | 2 cut(s) | 154, 345 |
| TseFI | GTSAC | 3 cut(s) | 145, 358, 517 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 3 cut(s) | 145, 358, 517 |
| TspDTI | ATGAA | 4 cut(s) | 239, 286, 380, 570 |
| TspRI | CASTG | 2 cut(s) | 154, 345 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 645 |
| VpaK11BI | GGWCC | 1 cut(s) | 469 |
| XspI | CTAG | 1 cut(s) | 98 |
| Zsp2I | ATGCAT | 1 cut(s) | 351 |